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| Revision:
Name Size Revision Age Author Comment
  _archive 1598 almost 13 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 10267 over 11 years Aaron Marcuse-Kubitza backups/Makefile: %.backup/restore: documented ...
  bin 10283 over 11 years Aaron Marcuse-Kubitza bugfix: bin/*: spell out [:alnum:] as [a-zA-Z0-...
  config 7801 almost 12 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: mk_db: Added command...
  exports 9928 over 11 years Aaron Marcuse-Kubitza added exports/_archive/
  inputs 10301 over 11 years Aaron Marcuse-Kubitza inputs/Madidi/: switched to new-style import
  lib 10302 over 11 years Aaron Marcuse-Kubitza lib/sql_io.py: put_table(): documented that Pos...
  mappings 10289 over 11 years Aaron Marcuse-Kubitza mappings/VegCore.htm: regenerated from wiki. Sp...
  planning 10266 over 11 years Aaron Marcuse-Kubitza planning/workflow/bien3_architecture.pptx: expo...
  schemas 10303 over 11 years Aaron Marcuse-Kubitza schemas/util.sql: added array_length(anyarray),...
  web 10282 over 11 years Aaron Marcuse-Kubitza web/links/index.htm: updated to Firefox bookmar...
.htaccess 326 Bytes 8771 over 11 years Aaron Marcuse-Kubitza /.htaccess: use canonical URL without symlinks
.rsync_filter.upload 33 Bytes 10042 over 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
.rsync_ignore 12 Bytes 10042 over 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
Makefile 12.6 KB 10223 over 11 years Aaron Marcuse-Kubitza /Makefile: mysql-Linux: also install mysql-work...
README.TXT 23.2 KB 10286 over 11 years Aaron Marcuse-Kubitza /README.TXT: Maintenance: regenerate mappings/V...
fix_perms 97 Bytes 7560 almost 12 years Aaron Marcuse-Kubitza Added root fix_perms
map 1001 Bytes 6949 about 12 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 almost 12 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
run 433 Bytes 9916 over 11 years Aaron Marcuse-Kubitza /run: geoscrub_input/make(): documented runtime...
unmapped_terms.csv 13.1 KB 7201 almost 12 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
10303 07/18/2013 07:23 AM Aaron Marcuse-Kubitza

schemas/util.sql: added array_length(anyarray), which does not require a second dimension argument

10302 07/18/2013 12:04 AM Aaron Marcuse-Kubitza

lib/sql_io.py: put_table(): documented that PostgreSQL 9.1+ now provides a way to implement insert/on duplicate select just once for each table (instead of dynamically for each insert) using the new INSTEAD OF triggers (http://www.postgresql.org/docs/9.1/static/plpgsql-trigger.html). INSTEAD OF triggers were not used when put_table() was developed, because it was necessary to support PostgreSQL 9.0, which was installed on the Mac and not easily upgradeable. it was eventually upgraded to add PostGIS, which required a complete reinstall of the DB from the staging tables, with the associated staging table reload bugs, as well as complete removal of the old Postgres version.

10301 07/17/2013 11:40 AM Aaron Marcuse-Kubitza

inputs/Madidi/: switched to new-style import

10300 07/17/2013 10:17 AM Aaron Marcuse-Kubitza

schemas/VegCore/VegCore.ERD.mwb: regenerated exports

10299 07/17/2013 10:16 AM Aaron Marcuse-Kubitza

schemas/VegCore/VegCore.ERD.mwb: categories: fixed position of place to match where it now is in the diagram. lined up boxes so that there is a visible line between the place- and occurrence-related categories.

10298 07/17/2013 09:27 AM Aaron Marcuse-Kubitza

inputs/Madidi/IndividualObservation/map.csv: translated 1:many mappings ( FieldFamilyFullName->{family,originalFamily} ) to derived columns (in postprocess.sql) to work with new-style import, which must have a 1:1 relationship between input and output columns

10297 07/17/2013 09:05 AM Aaron Marcuse-Kubitza

schemas/util.sql: added reset_col_names(), the counterpart to set_col_names(). note that this alters the map table, so it will need to be repopulated after running this function.

10296 07/17/2013 09:01 AM Aaron Marcuse-Kubitza

schemas/util.sql: mk_derived_col(): support using this function to overwrite an existing column (i.e. as a general-purpose function to perform in-place update with ALTER COLUMN TYPE USING)

10295 07/17/2013 07:40 AM Aaron Marcuse-Kubitza

lib/sh/db.sh: psql(): display stack traces and DETAIL sections of error messages at verbosity 2+, to help debugging (previously they were always turned off). in particular, the DETAIL section of a "duplicate key value violates unique constraint" error is useful because it contains the duplicated key.

10294 07/17/2013 04:54 AM Aaron Marcuse-Kubitza

inputs/.TNRS/: switched to new-style import. because this does not have data subdirs (data comes from the TNRS client), this is just a matter of adding ./run.

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