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Name Size Revision Age Author Comment
  _archive 1598 almost 13 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 10267 over 11 years Aaron Marcuse-Kubitza backups/Makefile: %.backup/restore: documented ...
  bin 10283 over 11 years Aaron Marcuse-Kubitza bugfix: bin/*: spell out [:alnum:] as [a-zA-Z0-...
  config 7801 almost 12 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: mk_db: Added command...
  exports 9928 over 11 years Aaron Marcuse-Kubitza added exports/_archive/
  inputs 10344 over 11 years Aaron Marcuse-Kubitza bugfix: inputs/Madidi/IndividualObservation/map...
  lib 10302 over 11 years Aaron Marcuse-Kubitza lib/sql_io.py: put_table(): documented that Pos...
  mappings 10289 over 11 years Aaron Marcuse-Kubitza mappings/VegCore.htm: regenerated from wiki. Sp...
  planning 10311 over 11 years Aaron Marcuse-Kubitza planning/timeline/timeline.2013.xls: moved Indi...
  schemas 10343 over 11 years Aaron Marcuse-Kubitza schemas/util.sql: map table: added unique const...
  web 10306 over 11 years Aaron Marcuse-Kubitza web/links/index.htm: updated to Firefox bookmar...
.htaccess 326 Bytes 8771 over 11 years Aaron Marcuse-Kubitza /.htaccess: use canonical URL without symlinks
.rsync_filter.upload 33 Bytes 10042 over 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
.rsync_ignore 12 Bytes 10042 over 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
Makefile 12.6 KB 10223 over 11 years Aaron Marcuse-Kubitza /Makefile: mysql-Linux: also install mysql-work...
README.TXT 23.2 KB 10286 over 11 years Aaron Marcuse-Kubitza /README.TXT: Maintenance: regenerate mappings/V...
fix_perms 97 Bytes 7560 almost 12 years Aaron Marcuse-Kubitza Added root fix_perms
map 1001 Bytes 6949 about 12 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 almost 12 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
run 433 Bytes 9916 over 11 years Aaron Marcuse-Kubitza /run: geoscrub_input/make(): documented runtime...
unmapped_terms.csv 13.1 KB 7201 almost 12 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
10344 07/19/2013 09:30 AM Aaron Marcuse-Kubitza

bugfix: inputs/Madidi/IndividualObservation/map.csv: removed derived column FieldFamilyFullName#originalFamily, which should not be in the map table because it can contain only columns that are initially in the table before running postprocess.sql

10343 07/19/2013 09:23 AM Aaron Marcuse-Kubitza

schemas/util.sql: map table: added unique constraint on the to column as well, because the destination names also need to be distinct in order to be a valid set of column names

10342 07/19/2013 09:14 AM Aaron Marcuse-Kubitza

schemas/util.sql: map table: changed pkey to a unique constraint so pgAdmin would sort the entries in table order (matching the order they are in the staging table) instead of alphabetized by the pkey

10341 07/19/2013 08:56 AM Aaron Marcuse-Kubitza

bugfix: inputs/REMIB/Specimen/map.csv: state: changed output column name to stateProvince_verbatim to match the renaming in postprocess.sql

10340 07/19/2013 08:40 AM Aaron Marcuse-Kubitza

inputs/REMIB/Specimen/postprocess.sql: remove frameshifted rows: removed out-of-date rerun time, which applied to doing all the deletes in the same statement (however, the current rerun time is approximately the same). note that index scans are not actually used (as the previous comment incorrectly stated) because the conditions for this filter are prefix-less regexps.

10339 07/19/2013 08:32 AM Aaron Marcuse-Kubitza

inputs/REMIB/Specimen/: translated single-column filters to postprocessing derived columns, using the steps at wiki.vegpath.org/Switching_to_new-style_import#stage-I-source-specific > "translate single-column filters to postprocessing derived columns". null-mapping filters now use wrappers around new util.map_nulls(). note that the verbatim columns input to the filters need to be renamed to avoid name collisions with their filtered columns, which must be VegCore terms for new-style import.

10338 07/19/2013 07:53 AM Aaron Marcuse-Kubitza

inputs/REMIB/Specimen/postprocess.sql: remove frameshifted rows: also filter out non-numbers for long_sec, lat_min, lat_sec

10337 07/19/2013 07:18 AM Aaron Marcuse-Kubitza

inputs/REMIB/Specimen/postprocess.sql: remove frameshifted rows: remove rows where long_min is not a number

10336 07/19/2013 07:15 AM Aaron Marcuse-Kubitza

inputs/REMIB/Specimen/postprocess.sql: change E'' to regular '' to avoid the need to double \ (instead ' would be doubled). E'' used to be necessary in previous versions of PostgreSQL to avoid a warning about escape string syntax.

10335 07/19/2013 07:09 AM Aaron Marcuse-Kubitza

inputs/REMIB/Specimen/postprocess.sql: remove frameshifted rows: removed unnecessary () around `DELETE FROM :table WHERE long_deg ...`

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