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Name Size Revision Age Author Comment
  _archive 1598 over 12 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 about 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 10267 almost 11 years Aaron Marcuse-Kubitza backups/Makefile: %.backup/restore: documented ...
  bin 10348 almost 11 years Aaron Marcuse-Kubitza bugfix: bin/repl: text mode: repurpose this to ...
  config 7801 over 11 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: mk_db: Added command...
  exports 9928 about 11 years Aaron Marcuse-Kubitza added exports/_archive/
  inputs 10349 almost 11 years Aaron Marcuse-Kubitza inputs/REMIB/: switched to new-style import, us...
  lib 10302 almost 11 years Aaron Marcuse-Kubitza lib/sql_io.py: put_table(): documented that Pos...
  mappings 10289 almost 11 years Aaron Marcuse-Kubitza mappings/VegCore.htm: regenerated from wiki. Sp...
  planning 10311 almost 11 years Aaron Marcuse-Kubitza planning/timeline/timeline.2013.xls: moved Indi...
  schemas 10345 almost 11 years Aaron Marcuse-Kubitza bugfix: schemas/util.sql: set_col_names(): need...
  web 10306 almost 11 years Aaron Marcuse-Kubitza web/links/index.htm: updated to Firefox bookmar...
.htaccess 326 Bytes 8771 about 11 years Aaron Marcuse-Kubitza /.htaccess: use canonical URL without symlinks
.rsync_filter.upload 33 Bytes 10042 about 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
.rsync_ignore 12 Bytes 10042 about 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
Makefile 12.6 KB 10223 almost 11 years Aaron Marcuse-Kubitza /Makefile: mysql-Linux: also install mysql-work...
README.TXT 23.2 KB 10286 almost 11 years Aaron Marcuse-Kubitza /README.TXT: Maintenance: regenerate mappings/V...
fix_perms 97 Bytes 7560 over 11 years Aaron Marcuse-Kubitza Added root fix_perms
map 1001 Bytes 6949 over 11 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 over 11 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
run 433 Bytes 9916 about 11 years Aaron Marcuse-Kubitza /run: geoscrub_input/make(): documented runtime...
unmapped_terms.csv 13.1 KB 7201 over 11 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
10349 07/19/2013 01:52 PM Aaron Marcuse-Kubitza

inputs/REMIB/: switched to new-style import, using the steps at wiki.vegpath.org/Switching_to_new-style_import#stage-I-source-specific > "run the following for each datasource"

10348 07/19/2013 11:40 AM Aaron Marcuse-Kubitza

bugfix: bin/repl: text mode: repurpose this to match SQL identifiers, for use by inputs/input.Makefile %/postprocess.sql. %/postprocess.sql is the only place currently using this mode, so this will not affect other scripts.

10347 07/19/2013 10:51 AM Aaron Marcuse-Kubitza

bugfix: inputs/input.Makefile: %/postprocess.sql: need to run bin/repl in text mode (text=1) so that values to match are treated as literal strings rather than regular expressions. this difference is important for column names with spaces or special characters.

10346 07/19/2013 10:24 AM Aaron Marcuse-Kubitza

bugfix: inputs/Madidi/LocationObservation/map.csv: resolved Notes, Notes 2 -> locationRemarks collision by _alt()ing them together. note that _alt() is fine because only one of these is ever populated.

10345 07/19/2013 09:54 AM Aaron Marcuse-Kubitza

bugfix: schemas/util.sql: set_col_names(): need to generate error if destination column already exists (rather than suppressing it with try_create()), because this indicates a collision

10344 07/19/2013 09:30 AM Aaron Marcuse-Kubitza

bugfix: inputs/Madidi/IndividualObservation/map.csv: removed derived column FieldFamilyFullName#originalFamily, which should not be in the map table because it can contain only columns that are initially in the table before running postprocess.sql

10343 07/19/2013 09:23 AM Aaron Marcuse-Kubitza

schemas/util.sql: map table: added unique constraint on the to column as well, because the destination names also need to be distinct in order to be a valid set of column names

10342 07/19/2013 09:14 AM Aaron Marcuse-Kubitza

schemas/util.sql: map table: changed pkey to a unique constraint so pgAdmin would sort the entries in table order (matching the order they are in the staging table) instead of alphabetized by the pkey

10341 07/19/2013 08:56 AM Aaron Marcuse-Kubitza

bugfix: inputs/REMIB/Specimen/map.csv: state: changed output column name to stateProvince_verbatim to match the renaming in postprocess.sql

10340 07/19/2013 08:40 AM Aaron Marcuse-Kubitza

inputs/REMIB/Specimen/postprocess.sql: remove frameshifted rows: removed out-of-date rerun time, which applied to doing all the deletes in the same statement (however, the current rerun time is approximately the same). note that index scans are not actually used (as the previous comment incorrectly stated) because the conditions for this filter are prefix-less regexps.

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