| 1 |
6406
|
aaronmk
|
UNCC,VegBIEN:/_setDefault:[source_id/source/shortname/_env:[name=source]]/path/_simplifyPath:[next=parent_id]/path,Comments
|
| 2 |
7817
|
aaronmk
|
accession,"/_if[@name=""if specimen""]/cond/_exists","Globally unique, although occasionally duplicated. [1]
|
| 3 |
7811
|
aaronmk
|
|
| 4 |
|
|
[1] Using the following query:
|
| 5 |
|
|
-----
|
| 6 |
|
|
SELECT herbarium, accession, count(*)
|
| 7 |
|
|
FROM ""UNCC"".""Specimen""
|
| 8 |
|
|
GROUP BY herbarium, accession
|
| 9 |
|
|
HAVING count(*) > 1
|
| 10 |
6409
|
aaronmk
|
-----"
|
| 11 |
7873
|
aaronmk
|
:UNCC,"/_if[@name=""if specimen""]/else/source/shortname/_first/1",
|
| 12 |
7817
|
aaronmk
|
accession,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/cond/_exists","Globally unique, although occasionally duplicated. [1]
|
| 13 |
7811
|
aaronmk
|
|
| 14 |
|
|
[1] Using the following query:
|
| 15 |
|
|
-----
|
| 16 |
|
|
SELECT herbarium, accession, count(*)
|
| 17 |
|
|
FROM ""UNCC"".""Specimen""
|
| 18 |
|
|
GROUP BY herbarium, accession
|
| 19 |
|
|
HAVING count(*) > 1
|
| 20 |
4951
|
aaronmk
|
-----"
|
| 21 |
7817
|
aaronmk
|
accession,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/cond/_exists","Globally unique, although occasionally duplicated. [1]
|
| 22 |
7811
|
aaronmk
|
|
| 23 |
|
|
[1] Using the following query:
|
| 24 |
|
|
-----
|
| 25 |
|
|
SELECT herbarium, accession, count(*)
|
| 26 |
|
|
FROM ""UNCC"".""Specimen""
|
| 27 |
|
|
GROUP BY herbarium, accession
|
| 28 |
|
|
HAVING count(*) > 1
|
| 29 |
6375
|
aaronmk
|
-----"
|
| 30 |
7873
|
aaronmk
|
:UNCC,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/then/_first/2",
|
| 31 |
7817
|
aaronmk
|
accession,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else","Globally unique, although occasionally duplicated. [1]
|
| 32 |
7811
|
aaronmk
|
|
| 33 |
|
|
[1] Using the following query:
|
| 34 |
|
|
-----
|
| 35 |
|
|
SELECT herbarium, accession, count(*)
|
| 36 |
|
|
FROM ""UNCC"".""Specimen""
|
| 37 |
|
|
GROUP BY herbarium, accession
|
| 38 |
|
|
HAVING count(*) > 1
|
| 39 |
6313
|
aaronmk
|
-----"
|
| 40 |
6432
|
aaronmk
|
collectno,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
|
| 41 |
10173
|
aaronmk
|
cultivated,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/else/_first/1/_alt/1/_map:[*=true]/value","For our purposes, anything non-NULL should be assumed to be cultivated"
|
| 42 |
|
|
campus,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/else/_first/1/_alt/2/_map:[*=true]/value","""this refers to occurrence on the UNCC campus, but I do not know the meaning of the codes. Presumably C = cultivated"" (https://projects.nceas.ucsb.edu/nceas/attachments/download/723/UNCC-validate_rkp_bb_rkp.xlsx#Campus)"
|
| 43 |
6432
|
aaronmk
|
locality,/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/1,
|
| 44 |
|
|
habitat,/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/3,
|
| 45 |
4566
|
aaronmk
|
collday,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
|
| 46 |
|
|
collmonth,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
|
| 47 |
|
|
collyear,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
|
| 48 |
7716
|
aaronmk
|
comment1,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1/_join/1,
|
| 49 |
|
|
comment2,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1/_join/2,
|
| 50 |
|
|
comment3,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1/_join/3,
|
| 51 |
|
|
comment4,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1/_join/4,
|
| 52 |
|
|
loanto,"/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1/_join/6/_label[label=""loaned to""]/value",
|
| 53 |
|
|
inorout,"/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1/_join/7/_label[label=""in or out""]/value",
|
| 54 |
7195
|
aaronmk
|
collectno,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2,
|
| 55 |
7865
|
aaronmk
|
flower,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/reproductivecondition/_join/1/_map:[A=absent,I=immature,M=mature]/value",Translation is from e-mail conv between Jim Matthews at Habitat Assessment <jim@habitatassessment.com> and Bob Peet on 2010-12-2~3
|
| 56 |
|
|
fruit,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/reproductivecondition/_join/2/_map:[A=absent,I=immature,M=mature]/value",Translation is from e-mail conv between Jim Matthews at Habitat Assessment <jim@habitatassessment.com> and Bob Peet on 2010-12-2~3
|
| 57 |
7817
|
aaronmk
|
accession,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else","Globally unique, although occasionally duplicated. [1]
|
| 58 |
7811
|
aaronmk
|
|
| 59 |
|
|
[1] Using the following query:
|
| 60 |
|
|
-----
|
| 61 |
|
|
SELECT herbarium, accession, count(*)
|
| 62 |
|
|
FROM ""UNCC"".""Specimen""
|
| 63 |
|
|
GROUP BY herbarium, accession
|
| 64 |
|
|
HAVING count(*) > 1
|
| 65 |
6375
|
aaronmk
|
-----"
|
| 66 |
7350
|
aaronmk
|
collectno,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/else",
|
| 67 |
7817
|
aaronmk
|
accession,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/cond/_exists","Globally unique, although occasionally duplicated. [1]
|
| 68 |
7811
|
aaronmk
|
|
| 69 |
|
|
[1] Using the following query:
|
| 70 |
|
|
-----
|
| 71 |
|
|
SELECT herbarium, accession, count(*)
|
| 72 |
|
|
FROM ""UNCC"".""Specimen""
|
| 73 |
|
|
GROUP BY herbarium, accession
|
| 74 |
|
|
HAVING count(*) > 1
|
| 75 |
4951
|
aaronmk
|
-----"
|
| 76 |
7873
|
aaronmk
|
:UNCC,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/then/name/_first/2",
|
| 77 |
|
|
:UNCC,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/then/sourcename/name/_first/2/_split:[separator=""[,;] *""]/value",
|
| 78 |
7195
|
aaronmk
|
collectno,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3",
|
| 79 |
6992
|
aaronmk
|
SciName,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/3",
|
| 80 |
6171
|
aaronmk
|
collector,/location/locationevent/taxonoccurrence/collector_id/party/fullname/_join/1,
|
| 81 |
|
|
collector1,/location/locationevent/taxonoccurrence/collector_id/party/fullname/_join/2,
|
| 82 |
|
|
collector2,/location/locationevent/taxonoccurrence/collector_id/party/fullname/_join/3,
|
| 83 |
|
|
collector3,/location/locationevent/taxonoccurrence/collector_id/party/fullname/_join/4,
|
| 84 |
6314
|
aaronmk
|
collectno,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
|
| 85 |
10173
|
aaronmk
|
cultivated,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/then/_first/1/_alt/1/_map:[*=true]/value","For our purposes, anything non-NULL should be assumed to be cultivated"
|
| 86 |
|
|
campus,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/then/_first/1/_alt/2/_map:[*=true]/value","""this refers to occurrence on the UNCC campus, but I do not know the meaning of the codes. Presumably C = cultivated"" (https://projects.nceas.ucsb.edu/nceas/attachments/download/723/UNCC-validate_rkp_bb_rkp.xlsx#Campus)"
|
| 87 |
5657
|
aaronmk
|
usdaRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/rank/_alt/1",
|
| 88 |
|
|
infrarank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/rank/_alt/2",
|
| 89 |
|
|
species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
|
| 90 |
|
|
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
|
| 91 |
|
|
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet",
|
| 92 |
|
|
infraname,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/taxonepithet,
|
| 93 |
|
|
usdaRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/rank/_alt/1,
|
| 94 |
|
|
infrarank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/rank/_alt/2,
|
| 95 |
5733
|
aaronmk
|
usdaRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonepithet/_if[@name=""if taxonomic name is epithet""]/cond/_alt:[2=true]/1/_taxonomic_name_is_epithet/rank/_alt/1",
|
| 96 |
|
|
infrarank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonepithet/_if[@name=""if taxonomic name is epithet""]/cond/_alt:[2=true]/1/_taxonomic_name_is_epithet/rank/_alt/2",
|
| 97 |
7142
|
aaronmk
|
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family,
|
| 98 |
|
|
SciName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/1,
|
| 99 |
9882
|
aaronmk
|
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value,
|
| 100 |
7142
|
aaronmk
|
species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
|
| 101 |
|
|
infraname,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond",
|
| 102 |
|
|
usdaRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then/_alt/1",
|
| 103 |
|
|
infrarank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then/_alt/2",
|
| 104 |
|
|
infraname,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2,
|
| 105 |
|
|
authors,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/2,
|
| 106 |
5657
|
aaronmk
|
authors,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/author,
|
| 107 |
|
|
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family,
|
| 108 |
|
|
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus,
|
| 109 |
5783
|
aaronmk
|
species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet,
|
| 110 |
5948
|
aaronmk
|
SciName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonname,
|
| 111 |
5657
|
aaronmk
|
usdaRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/verbatimrank/_alt/1,
|
| 112 |
|
|
infrarank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/verbatimrank/_alt/2,
|
| 113 |
7817
|
aaronmk
|
accession,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then","Globally unique, although occasionally duplicated. [1]
|
| 114 |
7811
|
aaronmk
|
|
| 115 |
|
|
[1] Using the following query:
|
| 116 |
|
|
-----
|
| 117 |
|
|
SELECT herbarium, accession, count(*)
|
| 118 |
|
|
FROM ""UNCC"".""Specimen""
|
| 119 |
|
|
GROUP BY herbarium, accession
|
| 120 |
|
|
HAVING count(*) > 1
|
| 121 |
7350
|
aaronmk
|
-----"
|
| 122 |
7198
|
aaronmk
|
collectno,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/then",
|
| 123 |
3969
|
aaronmk
|
locality,/location/locationnarrative/_merge/1,
|
| 124 |
|
|
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?"
|
| 125 |
5855
|
aaronmk
|
country,/location/locationplace/*_id/place/country,
|
| 126 |
|
|
county,/location/locationplace/*_id/place/county,
|
| 127 |
6179
|
aaronmk
|
country,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/country/_first/2,
|
| 128 |
6294
|
aaronmk
|
county,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/county/_first/2,
|
| 129 |
6179
|
aaronmk
|
state,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/stateprovince/_first/2,
|
| 130 |
5855
|
aaronmk
|
state,/location/locationplace/*_id/place/stateprovince,
|
| 131 |
4979
|
aaronmk
|
filler,,"** No join mapping for *filler ** Where used, same as family"
|
| 132 |
7866
|
aaronmk
|
herbarium,,"** No join mapping for specimenDonorInstitution/_map:[UNCCD=UNCC,*=*]/value ** ""The name or acronym in use by the institution that donated the collection"" (https://projects.nceas.ucsb.edu/nceas/attachments/download/593/UNCC-validation-Peet.xlsx#institutionCode). UNCCD likely = UNCC database."
|
| 133 |
7812
|
aaronmk
|
leaves,,** No join mapping for *leaves **
|
| 134 |
|
|
root,,** No join mapping for *root **
|
| 135 |
10209
|
aaronmk
|
row_num,,** No join mapping for *row_num **
|
| 136 |
4164
|
aaronmk
|
sheetno,,** No join mapping for associatedMedia ** ?
|
