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Name Size Revision Age Author Comment
  _archive 1598 over 12 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 10609 over 11 years Aaron Marcuse-Kubitza backups/TNRS.backup.md5: updated for last backup
  bin 10599 over 11 years Aaron Marcuse-Kubitza bugfix: bin/import_times: filtering out the Sou...
  config 7801 over 11 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: mk_db: Added command...
  exports 9928 over 11 years Aaron Marcuse-Kubitza added exports/_archive/
  inputs 10627 over 11 years Aaron Marcuse-Kubitza bugfix: inputs/VegBank/observation_/create.sql:...
  lib 10649 over 11 years Aaron Marcuse-Kubitza lib/sh/db.sh: mysqldump(): added create_db=1 fl...
  mappings 10616 over 11 years Aaron Marcuse-Kubitza mappings/VegCore.htm: regenerated from wiki. ad...
  planning 10556 over 11 years Aaron Marcuse-Kubitza planning/timeline/timeline.2013.xls: updated fo...
  schemas 10663 over 11 years Aaron Marcuse-Kubitza schemas/VegCore/VegCore.ERD.mwb: moved all requ...
  web 10612 over 11 years Aaron Marcuse-Kubitza bugfix: web/.htaccess: parse dotpath in query s...
.htaccess 326 Bytes 8771 over 11 years Aaron Marcuse-Kubitza /.htaccess: use canonical URL without symlinks
.rsync_filter.upload 33 Bytes 10042 over 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
.rsync_ignore 12 Bytes 10042 over 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
Makefile 12.6 KB 10539 over 11 years Aaron Marcuse-Kubitza bugfix: /Makefile: postgres-Linux: phppgadmin.c...
README.TXT 23.7 KB 10603 over 11 years Aaron Marcuse-Kubitza /README.TXT: Full database import: min disk spa...
fix_perms 97 Bytes 7560 almost 12 years Aaron Marcuse-Kubitza Added root fix_perms
map 1001 Bytes 6949 almost 12 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 almost 12 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
run 433 Bytes 9916 over 11 years Aaron Marcuse-Kubitza /run: geoscrub_input/make(): documented runtime...
unmapped_terms.csv 13.1 KB 7201 almost 12 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
10663 08/09/2013 12:51 PM Aaron Marcuse-Kubitza

schemas/VegCore/VegCore.ERD.mwb: moved all required fields before optional fields

10662 08/09/2013 12:39 PM Aaron Marcuse-Kubitza

schemas/VegCore/VegCore.ERD.mwb: regenerated exports and udpated image map

10661 08/09/2013 12:23 PM Aaron Marcuse-Kubitza

schemas/VegCore/VegCore.ERD.mwb: individual: identifying_place: documented that for specimens, this is the place the specimen was collected at. within_place: documented that this is not specified for specimens since their coordinates are usually not precise enough to identify an individual. specimen: documented that when there are multiple specimen replicates (copies) of a specimen, each gets its own specimen_observation pointing to the same specimen.

10660 08/09/2013 12:12 PM Aaron Marcuse-Kubitza

schemas/VegCore/VegCore.ERD.mwb: individual: added identifying_place since some individuals may be identified by their coordinates rather than a tag

10659 08/09/2013 12:06 PM Aaron Marcuse-Kubitza

schemas/VegCore/VegCore.ERD.mwb: added back aggregate_observation as a superclass of taxon_absence, taxon_presence. have only aggregate_observation, not taxon_observation, inherit from taxa_sampling_event because taxa_sampling_event is designed for multiple or aggregate samplings, but taxon_observation can be for just one occurrence. taxa_sampling_event: added required within_place since taxa must be sampled within a particular place. individual.place: renamed to within_place to clarify that each individual does not necessarily need its own place instance. individual_observation: added place_observed_at to serve the role that individual.place previously did (the place of an individual may change between observations).

10658 08/09/2013 10:41 AM Aaron Marcuse-Kubitza

schemas/VegCore/VegCore.ERD.mwb: aggregate_observation: renamed to individual_count for clarity. added count field. renamed traits to aggregating_traits since these are used in uniquely identifying the individual_count. taxon_presence: added cover_percent.

10657 08/09/2013 10:17 AM Aaron Marcuse-Kubitza

schemas/VegCore/VegCore.ERD.mwb: taxon_presence: documented that this is actually equivalent to VegX's aggregateOrganismObservation ("An observation applying to all occurrences of an organism"), in spite of VegCore having its own aggregate_observation table with a different purpose

10656 08/09/2013 10:12 AM Aaron Marcuse-Kubitza

schemas/VegX/.htaccess, TCS/.htaccess: prepend / to subpath so that it becomes an absolute XPath. the subpath is now usually provided as a dotpath translated to a dirpath, which would not have a leading / .

10655 08/09/2013 12:08 AM Aaron Marcuse-Kubitza

fix: schemas/VegCore/VegCore.ERD.mwb.run: comment about why the Mac version does not export the PDF correctly: clarified that it is the single-page PDF where the lines take very long to load, and the printed PDF where the colors are wrong in Adobe Reader

10654 08/09/2013 12:02 AM Aaron Marcuse-Kubitza

schemas/VegCore/VegCore.ERD.mwb.run: documented that to edit VegCore.ERD.mwb, you must use the Linux version of MySQL Workbench. this is because the Mac version does not export the PDF correctly: the colors are wrong in Adobe Reader and the lines take very long to load. unfortunately, you also cannot switch back and forth between the two versions, because they render the lines with a different spacing, which makes the tables different sizes and misaligns the connector lines. it is especially unfortunate that the Mac version messes up the PDFs, because it uses a smaller line spacing and therefore smaller tables which allows the tables to be spaced farther apart for better readability.

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