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785
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aaronmk
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##### Vars/functions
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| 3 |
895
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aaronmk
|
bin := ../bin
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1115
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aaronmk
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review_ = $(bin)/review <$(1) >for_review/$(1)
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review = $(call review_,$@)
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| 7 |
924
|
aaronmk
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| 8 |
1121
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aaronmk
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coreMaps := DwC1-DwC2.specimens.csv DwC2-VegBIEN.specimens.csv\
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VegX-VegBIEN.organisms.csv
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| 10 |
744
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aaronmk
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785
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aaronmk
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##### General targets
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| 13 |
1115
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aaronmk
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all: _always $(coreMaps) join_maps ch_root_maps ;
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150
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aaronmk
|
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223
|
aaronmk
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.SUFFIXES:
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383
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aaronmk
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_always:
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.PHONY: _always
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188
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aaronmk
|
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383
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aaronmk
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clean: _always
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196
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aaronmk
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$(RM) $(all)
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| 22 |
188
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aaronmk
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924
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aaronmk
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all :=
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423
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aaronmk
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remake: _always clean all ;
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| 27 |
785
|
aaronmk
|
##### Core maps cleanup
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| 28 |
198
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aaronmk
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895
|
aaronmk
|
ifneq ($(filter .%.last_cleanup,$(MAKECMDGOALS)),)
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.%.last_cleanup: %
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$(bin)/in_place $< $(bin)/simplify_xpath
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$(bin)/in_place $< $(bin)/sort 1 0
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touch $@
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1115
|
aaronmk
|
$(call review_,$<)
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779
|
aaronmk
|
.PRECIOUS: .%.last_cleanup
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| 36 |
895
|
aaronmk
|
else
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$(coreMaps): _always
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$(MAKE) $(@:%=.%.last_cleanup)
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endif
|
| 40 |
350
|
aaronmk
|
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| 41 |
1118
|
aaronmk
|
##### Maps generated with join/union
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| 42 |
1115
|
aaronmk
|
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joinMaps :=
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| 45 |
1118
|
aaronmk
|
DwC1-VegBIEN.specimens.csv: DwC1-DwC2.specimens.csv DwC2-VegBIEN.specimens.csv
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| 46 |
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$(bin)/join_sort <$+ >$@
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1115
|
aaronmk
|
joinMaps += DwC1-VegBIEN.specimens.csv
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| 49 |
1118
|
aaronmk
|
DwC-VegBIEN.specimens.csv: DwC2-VegBIEN.specimens.csv DwC1-VegBIEN.specimens.csv
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$(bin)/union <$+|$(bin)/sort 1 0 >$@
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$(review)
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joinMaps += DwC-VegBIEN.specimens.csv
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1115
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aaronmk
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join_maps: $(joinMaps) ;
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all += $(joinMaps)
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| 58 |
785
|
aaronmk
|
##### Maps generated with ch_root
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| 59 |
212
|
aaronmk
|
|
| 60 |
924
|
aaronmk
|
define chRoot
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| 61 |
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$(bin)/ch_root <$< >$@
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| 62 |
1115
|
aaronmk
|
$(review)
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| 63 |
924
|
aaronmk
|
endef
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| 64 |
197
|
aaronmk
|
|
| 65 |
924
|
aaronmk
|
chRootMaps :=
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| 66 |
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| 67 |
438
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aaronmk
|
VegX-VegBIEN.plots.csv: VegX-VegBIEN.organisms.csv
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| 68 |
188
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aaronmk
|
env \
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| 69 |
439
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aaronmk
|
left_in_root='/*s/individualOrganismObservation/*ID->/*s/plotObservation' \
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left_out_root='/*s/plotObservation' \
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| 71 |
525
|
aaronmk
|
right_in_root='/taxonoccurrence/*_id/locationevent' \
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right_out_root='/locationevent' \
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| 73 |
439
|
aaronmk
|
$(chRoot)
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| 74 |
924
|
aaronmk
|
chRootMaps += VegX-VegBIEN.plots.csv
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| 75 |
439
|
aaronmk
|
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| 76 |
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VegX-VegBIEN.stems.csv: VegX-VegBIEN.organisms.csv
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| 77 |
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env \
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| 78 |
441
|
aaronmk
|
left_in_root='/*s/individualOrganismObservation->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]' \
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| 79 |
504
|
aaronmk
|
left_out_root='/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]' \
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| 80 |
681
|
aaronmk
|
right_in_root='/taxonoccurrence/aggregateoccurrence/*_id/plantobservation/stemobservation' \
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| 81 |
673
|
aaronmk
|
right_out_root='/stemobservation' \
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| 82 |
439
|
aaronmk
|
$(chRoot)
|
| 83 |
924
|
aaronmk
|
chRootMaps += VegX-VegBIEN.plots.csv
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| 84 |
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| 85 |
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ch_root_maps: $(chRootMaps) ;
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| 86 |
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| 87 |
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all += $(chRootMaps)
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