| 1 |
785
|
aaronmk
|
##### Vars/functions
|
| 2 |
|
|
|
| 3 |
895
|
aaronmk
|
bin := ../bin
|
| 4 |
|
|
|
| 5 |
1115
|
aaronmk
|
review_ = $(bin)/review <$(1) >for_review/$(1)
|
| 6 |
|
|
review = $(call review_,$@)
|
| 7 |
924
|
aaronmk
|
|
| 8 |
1121
|
aaronmk
|
coreMaps := DwC1-DwC2.specimens.csv DwC2-VegBIEN.specimens.csv\
|
| 9 |
|
|
VegX-VegBIEN.organisms.csv
|
| 10 |
744
|
aaronmk
|
|
| 11 |
785
|
aaronmk
|
##### General targets
|
| 12 |
|
|
|
| 13 |
1115
|
aaronmk
|
all: _always $(coreMaps) join_maps ch_root_maps ;
|
| 14 |
150
|
aaronmk
|
|
| 15 |
223
|
aaronmk
|
.SUFFIXES:
|
| 16 |
|
|
|
| 17 |
383
|
aaronmk
|
_always:
|
| 18 |
|
|
.PHONY: _always
|
| 19 |
188
|
aaronmk
|
|
| 20 |
383
|
aaronmk
|
clean: _always
|
| 21 |
196
|
aaronmk
|
$(RM) $(all)
|
| 22 |
188
|
aaronmk
|
|
| 23 |
924
|
aaronmk
|
all :=
|
| 24 |
|
|
|
| 25 |
423
|
aaronmk
|
remake: _always clean all ;
|
| 26 |
|
|
|
| 27 |
785
|
aaronmk
|
##### Core maps cleanup
|
| 28 |
198
|
aaronmk
|
|
| 29 |
895
|
aaronmk
|
ifneq ($(filter .%.last_cleanup,$(MAKECMDGOALS)),)
|
| 30 |
|
|
.%.last_cleanup: %
|
| 31 |
|
|
$(bin)/in_place $< $(bin)/simplify_xpath
|
| 32 |
|
|
$(bin)/in_place $< $(bin)/sort 1 0
|
| 33 |
|
|
touch $@
|
| 34 |
1115
|
aaronmk
|
$(call review_,$<)
|
| 35 |
779
|
aaronmk
|
.PRECIOUS: .%.last_cleanup
|
| 36 |
895
|
aaronmk
|
else
|
| 37 |
|
|
$(coreMaps): _always
|
| 38 |
|
|
$(MAKE) $(@:%=.%.last_cleanup)
|
| 39 |
|
|
endif
|
| 40 |
350
|
aaronmk
|
|
| 41 |
1118
|
aaronmk
|
##### Maps generated with join/union
|
| 42 |
1115
|
aaronmk
|
|
| 43 |
|
|
joinMaps :=
|
| 44 |
|
|
|
| 45 |
1128
|
aaronmk
|
DwC-VegBIEN.specimens.csv: DwC1-DwC2.specimens.csv DwC2-VegBIEN.specimens.csv
|
| 46 |
|
|
env header_num=1 $(bin)/join_union_sort <$+ >$@
|
| 47 |
1118
|
aaronmk
|
joinMaps += DwC-VegBIEN.specimens.csv
|
| 48 |
|
|
|
| 49 |
1115
|
aaronmk
|
join_maps: $(joinMaps) ;
|
| 50 |
|
|
|
| 51 |
|
|
all += $(joinMaps)
|
| 52 |
|
|
|
| 53 |
785
|
aaronmk
|
##### Maps generated with ch_root
|
| 54 |
212
|
aaronmk
|
|
| 55 |
924
|
aaronmk
|
define chRoot
|
| 56 |
|
|
$(bin)/ch_root <$< >$@
|
| 57 |
1115
|
aaronmk
|
$(review)
|
| 58 |
924
|
aaronmk
|
endef
|
| 59 |
197
|
aaronmk
|
|
| 60 |
924
|
aaronmk
|
chRootMaps :=
|
| 61 |
|
|
|
| 62 |
438
|
aaronmk
|
VegX-VegBIEN.plots.csv: VegX-VegBIEN.organisms.csv
|
| 63 |
188
|
aaronmk
|
env \
|
| 64 |
439
|
aaronmk
|
left_in_root='/*s/individualOrganismObservation/*ID->/*s/plotObservation' \
|
| 65 |
|
|
left_out_root='/*s/plotObservation' \
|
| 66 |
525
|
aaronmk
|
right_in_root='/taxonoccurrence/*_id/locationevent' \
|
| 67 |
|
|
right_out_root='/locationevent' \
|
| 68 |
439
|
aaronmk
|
$(chRoot)
|
| 69 |
924
|
aaronmk
|
chRootMaps += VegX-VegBIEN.plots.csv
|
| 70 |
439
|
aaronmk
|
|
| 71 |
|
|
VegX-VegBIEN.stems.csv: VegX-VegBIEN.organisms.csv
|
| 72 |
|
|
env \
|
| 73 |
441
|
aaronmk
|
left_in_root='/*s/individualOrganismObservation->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]' \
|
| 74 |
504
|
aaronmk
|
left_out_root='/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]' \
|
| 75 |
681
|
aaronmk
|
right_in_root='/taxonoccurrence/aggregateoccurrence/*_id/plantobservation/stemobservation' \
|
| 76 |
673
|
aaronmk
|
right_out_root='/stemobservation' \
|
| 77 |
439
|
aaronmk
|
$(chRoot)
|
| 78 |
924
|
aaronmk
|
chRootMaps += VegX-VegBIEN.plots.csv
|
| 79 |
|
|
|
| 80 |
|
|
ch_root_maps: $(chRootMaps) ;
|
| 81 |
|
|
|
| 82 |
|
|
all += $(chRootMaps)
|
