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Name Size Revision Age Author Comment
  BIEN2 10896 about 11 years Aaron Marcuse-Kubitza added BIEN2/traits_observation_counts.xls
  _archive 1598 over 12 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  backups 11355 about 11 years Aaron Marcuse-Kubitza backups/TNRS.backup.md5: updated
  bin 11430 about 11 years Aaron Marcuse-Kubitza bugfix: bin/import_all: restore the working dir...
  config 7801 over 11 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: mk_db: Added command...
  derived 11347 about 11 years Paul Sarando Added instructions for dependencies in the README.
  exports 10853 about 11 years Aaron Marcuse-Kubitza exports/: svn:ignore *.zip
  inputs 11397 about 11 years Aaron Marcuse-Kubitza inputs/CVS/_src/: added refresh from Mike Lee
  lib 11432 about 11 years Aaron Marcuse-Kubitza lib/sh/util.sh: added require_dot_script()
  mappings 11107 about 11 years Aaron Marcuse-Kubitza bugfix: mappings/VegCore-VegBIEN.csv: nest all ...
  planning 11402 about 11 years Aaron Marcuse-Kubitza planning/timeline/timeline.2013.xls: updated fo...
  schemas 11424 about 11 years Aaron Marcuse-Kubitza bugfix: schemas/vegbien.sql: taxondetermination...
  web 11403 about 11 years Aaron Marcuse-Kubitza web/links/index.htm: updated to Firefox bookmar...
.htaccess 326 Bytes 8771 over 11 years Aaron Marcuse-Kubitza /.htaccess: use canonical URL without symlinks
.rsync_filter.upload 33 Bytes 10042 over 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
.rsync_ignore 12 Bytes 10042 over 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
Makefile 12.7 KB 11150 about 11 years Aaron Marcuse-Kubitza /Makefile: mk_db: config/users.sql: unset ON_ER...
README.TXT 24.2 KB 11263 about 11 years Aaron Marcuse-Kubitza /README.TXT: Single datasource import: added po...
fix_perms 97 Bytes 7560 almost 12 years Aaron Marcuse-Kubitza Added root fix_perms
map 1001 Bytes 6949 almost 12 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 almost 12 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
run 661 Bytes 10881 about 11 years Aaron Marcuse-Kubitza /run: geoscrub_input/make(): updated runtime (2...
unmapped_terms.csv 13.1 KB 7201 almost 12 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
11432 10/24/2013 04:24 PM Aaron Marcuse-Kubitza

lib/sh/util.sh: added require_dot_script()

11431 10/24/2013 04:13 PM Aaron Marcuse-Kubitza

bugfix: lib/sh/util.sh: $top_script: use @BASH_SOURCE instead of $0, because this is also defined for .-scripts

11430 10/24/2013 04:03 PM Aaron Marcuse-Kubitza

bugfix: bin/import_all: restore the working dir when main() is done, in case it started as something other than the root dir

11429 10/24/2013 03:49 PM Aaron Marcuse-Kubitza

bin/after_import: support turning off the end-of-import backup for imports that are not the full database

11428 10/24/2013 03:26 PM Aaron Marcuse-Kubitza

bugfix: lib/runscripts/util.run: `trap on_exit EXIT`: only set this if the script is not a dot script, because if it is a dot script, on_exit() will not be invoked until the calling shell exits, which may be much later than when the script is run. previously, this was handled by canceling the EXIT trap if on_exit() is run manually, but this would not work correctly if a load-time error prevented on_exit() from running and canceling the trap.

11427 10/24/2013 03:21 PM Aaron Marcuse-Kubitza

bugfix: lib/runscripts/util.run: if is_dot_script, fix $ when no args causes this to incorrectly contain the script name. use is_dot_script rather than the presence of $ args to decide whether to use @BASH_ARGV, because @BASH_ARGV is actually wrong when run as a .-script (it contains the script name).

11426 10/24/2013 03:17 PM Aaron Marcuse-Kubitza

bugfix: lib/sh/util.sh: is_dot_script(): need to subtract 1 from ${#BASH_LINENO[@]}, because this is the array length rather than the index of the last element as in Perl

11425 10/24/2013 02:58 PM Aaron Marcuse-Kubitza

lib/sh/util.sh: added is_dot_script()

11424 10/24/2013 01:15 PM Aaron Marcuse-Kubitza

bugfix: schemas/vegbien.sql: taxondetermination_set_iscurrent(): is_datasource_current (used by analytical_stem_view): need to separately check if `determinationtype IS NULL`, because `determinationtype NOT IN (accepted, matched))` will return NULL (false) if determinationtype is NULL, causing no match

11423 10/24/2013 01:11 PM Aaron Marcuse-Kubitza

bugfix: bin/make_analytical_db: when running into a public schema other than "public", also pass this to `/run export_` (which currently uses $schema instead of $public)

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