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Name Size Revision Age Author Comment
  BIEN2 10896 about 11 years Aaron Marcuse-Kubitza added BIEN2/traits_observation_counts.xls
  _archive 1598 over 12 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  backups 11355 about 11 years Aaron Marcuse-Kubitza backups/TNRS.backup.md5: updated
  bin 11456 about 11 years Aaron Marcuse-Kubitza bugfix: bin/with_all: @inputs default value: us...
  config 7801 over 11 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: mk_db: Added command...
  derived 11563 about 11 years Paul Sarando Added an output CSV file option to geoscrub.sh.
  exports 11485 about 11 years Aaron Marcuse-Kubitza added exports/2013-7-10.Naia.range_limiting_fac...
  inputs 11564 about 11 years Aaron Marcuse-Kubitza inputs/input.Makefile: $(_svnFilesGlob): also s...
  lib 11462 about 11 years Aaron Marcuse-Kubitza lib/runscripts/import_subset.run: $version: use...
  mappings 11513 about 11 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: mapped taxon_dete...
  planning 11554 about 11 years Aaron Marcuse-Kubitza planning/timeline/timeline.2013.xls: updated fo...
  schemas 11550 about 11 years Aaron Marcuse-Kubitza schemas/Makefile: $(confirmRmPublicSchema0): us...
  web 11403 about 11 years Aaron Marcuse-Kubitza web/links/index.htm: updated to Firefox bookmar...
.htaccess 326 Bytes 8771 over 11 years Aaron Marcuse-Kubitza /.htaccess: use canonical URL without symlinks
.rsync_filter.upload 33 Bytes 10042 over 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
.rsync_ignore 12 Bytes 10042 over 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
Makefile 12.7 KB 11150 about 11 years Aaron Marcuse-Kubitza /Makefile: mk_db: config/users.sql: unset ON_ER...
README.TXT 25 KB 11516 about 11 years Aaron Marcuse-Kubitza /README.TXT: for each task, documented which ma...
fix_perms 97 Bytes 7560 almost 12 years Aaron Marcuse-Kubitza Added root fix_perms
map 1001 Bytes 6949 almost 12 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 almost 12 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
run 661 Bytes 10881 about 11 years Aaron Marcuse-Kubitza /run: geoscrub_input/make(): updated runtime (2...
unmapped_terms.csv 13.1 KB 7201 almost 12 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
11564 11/05/2013 07:27 PM Aaron Marcuse-Kubitza

inputs/input.Makefile: $(_svnFilesGlob): also svn-add _no_import in the top-level datasrc dir. (this requires using add! , because the presence of a _no_import file there will normally turn off adding by svnFilesGlob.)
11563 11/05/2013 11:49 AM Paul Sarando

Added an output CSV file option to geoscrub.sh.
11562 11/04/2013 03:25 PM Paul Sarando

Added notes on running biengeo scripts to README.
11561 10/31/2013 05:35 PM Paul Sarando

Added biengeo script options for data directories.

Added GADM and geonames.org data dir options to
update_validation_data.sh scripts.
Added geoscrub input data dir option to geoscrub.sh scripts.
11560 10/31/2013 05:35 PM Paul Sarando

Added update options to biengeo update_validation_data.sh

Added options to update only GADM data, only Geonames.org data, or
neither. In every case, the geonames-to-gadm scripts are always run.
11559 10/31/2013 05:35 PM Paul Sarando

Added cmd-line options to biengeo bash scripts.

All biengeo bash scripts now accept command line options to specify psql
user, host, and database values.
These options are the same as those defined by the psql command.
If an invalid option is given to a script, a usage message is printed...
11558 10/31/2013 05:35 PM Paul Sarando

Fix biengeo script password prompt for postgres user.

Changed the DB_HOST variables in the biengeo bash scripts to a
DB_HOST_OPT variable that is blank by default.
Updated all psql calls that used "-h $DB_HOST" to use just $DB_HOST_OPT
instead.
This means that to specify a different db host, the DB_HOST_OPT...
11557 10/31/2013 05:35 PM Paul Sarando

Fixed TRUNCATE statement in truncate.geonames.sql.

Fixed the biengeo truncate.geonames.sql script to include all tables in
one TRUNCATE statement that have foreign-key references to geonames and
country tables.
11556 10/31/2013 05:35 PM Paul Sarando

Added more approx. runtimes to biengeo README.
11555 10/31/2013 05:35 PM Paul Sarando

Renamed biengeo install scripts to setup scripts.

It seems to make more sense to call these setup scripts, since they are
only setting up the database and tables, and not actually installing any
files anywhere on the OS.

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