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Name Size Revision Age Author Comment
  BIEN2 10896 about 11 years Aaron Marcuse-Kubitza added BIEN2/traits_observation_counts.xls
  _archive 1598 over 12 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  backups 11577 about 11 years Aaron Marcuse-Kubitza added backups/vegbien.r11549.backup.md5
  bin 11456 about 11 years Aaron Marcuse-Kubitza bugfix: bin/with_all: @inputs default value: us...
  config 7801 over 11 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: mk_db: Added command...
  derived 11591 about 11 years Aaron Marcuse-Kubitza derived/biengeo/load-geoscrub-input.sh: allow t...
  exports 11599 about 11 years Aaron Marcuse-Kubitza exports/2013-7-10.Naia.range_limiting_factors.c...
  inputs 11614 about 11 years Aaron Marcuse-Kubitza inputs/.TNRS/schema.sql: tnrs: moved instructio...
  lib 11605 about 11 years Aaron Marcuse-Kubitza lib/sh/util.sh: already_exists_msg(): added ins...
  mappings 11513 about 11 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: mapped taxon_dete...
  planning 11596 about 11 years Aaron Marcuse-Kubitza planning/timeline/timeline.2013.xls: updated fo...
  schemas 11598 about 11 years Aaron Marcuse-Kubitza bugfix: schemas/vegbien.sql: 2013-7-10.Naia.ran...
  web 11403 about 11 years Aaron Marcuse-Kubitza web/links/index.htm: updated to Firefox bookmar...
.htaccess 326 Bytes 8771 over 11 years Aaron Marcuse-Kubitza /.htaccess: use canonical URL without symlinks
.rsync_filter.upload 33 Bytes 10042 over 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
.rsync_ignore 12 Bytes 10042 over 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
Makefile 12.7 KB 11150 about 11 years Aaron Marcuse-Kubitza /Makefile: mk_db: config/users.sql: unset ON_ER...
README.TXT 24.9 KB 11573 about 11 years Aaron Marcuse-Kubitza /README.TXT: Full database import: after import...
fix_perms 97 Bytes 7560 almost 12 years Aaron Marcuse-Kubitza Added root fix_perms
map 1001 Bytes 6949 almost 12 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 almost 12 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
run 511 Bytes 11590 about 11 years Aaron Marcuse-Kubitza /run: use new exports/geoscrub_input.csv.run
unmapped_terms.csv 13.1 KB 7201 almost 12 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
11614 11/09/2013 03:54 PM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: tnrs: moved instructions to apply schema changes on vegbiendev to the TNRS schema, because this applies to all elements in the TNRS schema, not just the tnrs table
11613 11/09/2013 03:30 PM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: score_ok(): don't make it STRICT because this prevents it from being inlined
11612 11/09/2013 03:24 PM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: tnrs: removed no longer used tnrs_score_ok index. use tnrs__valid_match instead.
11611 11/09/2013 03:09 PM Aaron Marcuse-Kubitza

bugfix: inputs/.TNRS/schema.sql: tnrs_populate_fields(): is_valid_match: documented that this excludes homonyms because these are not valid matches (i.e. TNRS provides a name, but the name is not meaningful because it is not unambiguous)
11610 11/09/2013 03:07 PM Aaron Marcuse-Kubitza

bugfix: inputs/.TNRS/schema.sql: ValidMatchedTaxon: exclude inter-kingdom homonyms because these are not valid matches (i.e. TNRS provides a name, but the name is not meaningful because it is not unambiguous). this uses taxon_scrub__is_valid_match instead of score_ok() to determine whether the result should be included.
11609 11/09/2013 02:56 PM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: ValidMatchedTaxon: synced to MatchedTaxon
11608 11/09/2013 02:55 PM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: MatchedTaxon: added is_valid_match
11607 11/09/2013 02:52 PM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: tnrs: added tnrs__valid_match index to facilitate joining to only valid matches
11606 11/09/2013 02:48 PM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: tnrs: added is_valid_match derived column, to make it easier to select from only those TNRS results that can safely be used as a scrubbed name
11605 11/09/2013 02:02 PM Aaron Marcuse-Kubitza

lib/sh/util.sh: already_exists_msg(): added instructions on how to force-remake when the file already exists (prepend `rm=1` to the command)

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