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Name Size Revision Age Author Comment
  BIEN2 10896 over 11 years Aaron Marcuse-Kubitza added BIEN2/traits_observation_counts.xls
  _archive 1598 almost 13 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  backups 11824 about 11 years Aaron Marcuse-Kubitza backups/TNRS.backup: saved copy backups/TNRS.20...
  bin 11840 about 11 years Aaron Marcuse-Kubitza bin/make_analytical_db: don't regenerate family...
  config 7801 almost 12 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: mk_db: Added command...
  derived 11783 about 11 years Aaron Marcuse-Kubitza derived/biengeo/README.txt: updated geoscrub.sh...
  exports 11599 about 11 years Aaron Marcuse-Kubitza exports/2013-7-10.Naia.range_limiting_factors.c...
  inputs 11864 about 11 years Aaron Marcuse-Kubitza inputs/.geoscrub/run: documented import() runti...
  lib 11861 about 11 years Aaron Marcuse-Kubitza lib/sh/local.sh: public_schema_exists(): use a ...
  mappings 11513 about 11 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: mapped taxon_dete...
  planning 11791 about 11 years Aaron Marcuse-Kubitza planning/timeline/timeline.2013.xls: updated fo...
  schemas 11838 about 11 years Aaron Marcuse-Kubitza schemas/vegbien.sql: include the family_higher_...
  web 11798 about 11 years Aaron Marcuse-Kubitza web/links/index.htm: updated to Firefox bookmar...
.htaccess 326 Bytes 8771 over 11 years Aaron Marcuse-Kubitza /.htaccess: use canonical URL without symlinks
.rsync_filter.upload 33 Bytes 10042 over 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
.rsync_ignore 12 Bytes 10042 over 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
Makefile 13.4 KB 11862 about 11 years Aaron Marcuse-Kubitza fix: /Makefile: inputs/reinstall: commented out...
README.TXT 25.1 KB 11800 about 11 years Aaron Marcuse-Kubitza bugfix: /README.TXT: Full database import: To r...
fix_perms 97 Bytes 7560 almost 12 years Aaron Marcuse-Kubitza Added root fix_perms
map 1001 Bytes 6949 about 12 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 80.2 KB 11788 about 11 years Aaron Marcuse-Kubitza **/new_terms.csv, unmapped_terms.csv updated (u...
run 511 Bytes 11590 about 11 years Aaron Marcuse-Kubitza /run: use new exports/geoscrub_input.csv.run
unmapped_terms.csv 33 KB 11788 about 11 years Aaron Marcuse-Kubitza **/new_terms.csv, unmapped_terms.csv updated (u...

Latest revisions

# Date Author Comment
11864 12/06/2013 06:56 AM Aaron Marcuse-Kubitza

inputs/.geoscrub/run: documented import() runtime (20 min)

11863 12/06/2013 06:12 AM Aaron Marcuse-Kubitza

bugfix: inputs/.NCBI/import_order.txt: added nodes.src, names.src so that these would be installed under new-style import as well. this means that their columns will now be automapped, requiring the names to be renamed to VegCore names in nodes/create.sql.

11862 12/06/2013 06:01 AM Aaron Marcuse-Kubitza

fix: /Makefile: inputs/reinstall: commented out to avoid a cascade of "overriding commands for target" warnings. this will revert to the default uninstall, install sequence for this target rather than the simultaneous-reinstall optimization (which can still be invoked manually).

11861 12/06/2013 05:52 AM Aaron Marcuse-Kubitza

lib/sh/local.sh: public_schema_exists(): use a higher log_level for pg_schema_exists, to avoid all the verbose output involved in running the query

11860 12/06/2013 05:44 AM Aaron Marcuse-Kubitza

bugfix: lib/sh/local.sh: public_schema_exists(): can no longer use psql_script_vegbien for this, because using `SET search_path` (called by psql_script_vegbien) with a schema that does not exist no longer produces an error. instead, use new pg_schema_exists(), which uses a different command that does produce an error if the schema does not exist.

11859 12/06/2013 05:38 AM Aaron Marcuse-Kubitza

lib/sh/db.sh: added pg_require_schema()

11858 12/06/2013 05:37 AM Aaron Marcuse-Kubitza

lib/sh/util.sh: stderr2stdout(): documented that this redirects fd 2->1 and log_fd (but not back to 2)

11857 12/06/2013 05:34 AM Aaron Marcuse-Kubitza

bugfix: lib/sh/util.sh: stderr2stdout() use `command` before tee, which re-filters log_fd so that stderr itself is also filtered. this allows log-filtering out an otherwise-confusing benign error when using e.g. stderr_matches().

11856 12/06/2013 04:31 AM Aaron Marcuse-Kubitza

lib/sh/util.sh: added not(), for use in prefixing wrapped commands

11855 12/06/2013 04:14 AM Aaron Marcuse-Kubitza

lib/sh/db.sh: added pg_schema_exists()

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