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785
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aaronmk
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##### Vars/functions
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| 2 |
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| 3 |
895
|
aaronmk
|
bin := ../bin
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| 4 |
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| 5 |
1115
|
aaronmk
|
review_ = $(bin)/review <$(1) >for_review/$(1)
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| 6 |
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review = $(call review_,$@)
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| 7 |
924
|
aaronmk
|
|
| 8 |
1121
|
aaronmk
|
coreMaps := DwC1-DwC2.specimens.csv DwC2-VegBIEN.specimens.csv\
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| 9 |
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VegX-VegBIEN.organisms.csv
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| 10 |
744
|
aaronmk
|
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| 11 |
785
|
aaronmk
|
##### General targets
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| 12 |
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| 13 |
1115
|
aaronmk
|
all: _always $(coreMaps) join_maps ch_root_maps ;
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| 14 |
150
|
aaronmk
|
|
| 15 |
1260
|
aaronmk
|
.SUFFIXES: # turn off built-in suffix rules
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| 16 |
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.SECONDARY: # don't automatically delete intermediate files
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| 17 |
223
|
aaronmk
|
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| 18 |
383
|
aaronmk
|
_always:
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.PHONY: _always
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| 20 |
188
|
aaronmk
|
|
| 21 |
383
|
aaronmk
|
clean: _always
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| 22 |
196
|
aaronmk
|
$(RM) $(all)
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| 23 |
188
|
aaronmk
|
|
| 24 |
924
|
aaronmk
|
all :=
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| 25 |
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| 26 |
423
|
aaronmk
|
remake: _always clean all ;
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| 27 |
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| 28 |
785
|
aaronmk
|
##### Core maps cleanup
|
| 29 |
198
|
aaronmk
|
|
| 30 |
895
|
aaronmk
|
ifneq ($(filter .%.last_cleanup,$(MAKECMDGOALS)),)
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| 31 |
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.%.last_cleanup: %
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| 32 |
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$(bin)/in_place $< $(bin)/simplify_xpath
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| 33 |
1132
|
aaronmk
|
$(bin)/in_place $< $(bin)/sort_map
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| 34 |
895
|
aaronmk
|
touch $@
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| 35 |
1115
|
aaronmk
|
$(call review_,$<)
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| 36 |
895
|
aaronmk
|
else
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$(coreMaps): _always
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| 38 |
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$(MAKE) $(@:%=.%.last_cleanup)
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| 39 |
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endif
|
| 40 |
350
|
aaronmk
|
|
| 41 |
1140
|
aaronmk
|
##### Maps generated with join
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| 42 |
1115
|
aaronmk
|
|
| 43 |
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joinMaps :=
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| 44 |
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| 45 |
1128
|
aaronmk
|
DwC-VegBIEN.specimens.csv: DwC1-DwC2.specimens.csv DwC2-VegBIEN.specimens.csv
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| 46 |
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env header_num=1 $(bin)/join_union_sort <$+ >$@
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| 47 |
1118
|
aaronmk
|
joinMaps += DwC-VegBIEN.specimens.csv
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| 48 |
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| 49 |
1140
|
aaronmk
|
DwC.self.specimens.csv: DwC-VegBIEN.specimens.csv
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| 50 |
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$(bin)/cols 0 0 <$< >$@
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joinMaps += DwC.self.specimens.csv
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| 53 |
1115
|
aaronmk
|
join_maps: $(joinMaps) ;
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| 55 |
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all += $(joinMaps)
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| 56 |
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| 57 |
785
|
aaronmk
|
##### Maps generated with ch_root
|
| 58 |
212
|
aaronmk
|
|
| 59 |
924
|
aaronmk
|
define chRoot
|
| 60 |
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$(bin)/ch_root <$< >$@
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| 61 |
1115
|
aaronmk
|
$(review)
|
| 62 |
924
|
aaronmk
|
endef
|
| 63 |
197
|
aaronmk
|
|
| 64 |
924
|
aaronmk
|
chRootMaps :=
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| 65 |
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|
| 66 |
438
|
aaronmk
|
VegX-VegBIEN.plots.csv: VegX-VegBIEN.organisms.csv
|
| 67 |
188
|
aaronmk
|
env \
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| 68 |
439
|
aaronmk
|
left_in_root='/*s/individualOrganismObservation/*ID->/*s/plotObservation' \
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left_out_root='/*s/plotObservation' \
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| 70 |
525
|
aaronmk
|
right_in_root='/taxonoccurrence/*_id/locationevent' \
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| 71 |
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right_out_root='/locationevent' \
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| 72 |
439
|
aaronmk
|
$(chRoot)
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| 73 |
924
|
aaronmk
|
chRootMaps += VegX-VegBIEN.plots.csv
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| 74 |
439
|
aaronmk
|
|
| 75 |
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VegX-VegBIEN.stems.csv: VegX-VegBIEN.organisms.csv
|
| 76 |
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env \
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| 77 |
441
|
aaronmk
|
left_in_root='/*s/individualOrganismObservation->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]' \
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| 78 |
504
|
aaronmk
|
left_out_root='/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]' \
|
| 79 |
681
|
aaronmk
|
right_in_root='/taxonoccurrence/aggregateoccurrence/*_id/plantobservation/stemobservation' \
|
| 80 |
673
|
aaronmk
|
right_out_root='/stemobservation' \
|
| 81 |
439
|
aaronmk
|
$(chRoot)
|
| 82 |
924
|
aaronmk
|
chRootMaps += VegX-VegBIEN.plots.csv
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| 83 |
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| 84 |
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ch_root_maps: $(chRootMaps) ;
|
| 85 |
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| 86 |
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all += $(chRootMaps)
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