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785
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aaronmk
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##### Vars/functions
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| 3 |
895
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aaronmk
|
bin := ../bin
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1115
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aaronmk
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review_ = $(bin)/review <$(1) >for_review/$(1)
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review = $(call review_,$@)
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| 7 |
924
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aaronmk
|
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| 8 |
1121
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aaronmk
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coreMaps := DwC1-DwC2.specimens.csv DwC2-VegBIEN.specimens.csv\
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VegX-VegBIEN.organisms.csv
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744
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aaronmk
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785
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aaronmk
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##### General targets
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1115
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aaronmk
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all: _always $(coreMaps) join_maps ch_root_maps ;
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150
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aaronmk
|
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1260
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aaronmk
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.SUFFIXES: # turn off built-in suffix rules
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.SECONDARY: # don't automatically delete intermediate files
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223
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aaronmk
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383
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aaronmk
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_always:
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.PHONY: _always
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188
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aaronmk
|
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383
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aaronmk
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clean: _always
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| 22 |
196
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aaronmk
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$(RM) $(all)
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| 23 |
188
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aaronmk
|
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924
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aaronmk
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all :=
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423
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aaronmk
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remake: _always clean all ;
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785
|
aaronmk
|
##### Core maps cleanup
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| 29 |
198
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aaronmk
|
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| 30 |
895
|
aaronmk
|
ifneq ($(filter .%.last_cleanup,$(MAKECMDGOALS)),)
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.%.last_cleanup: %
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$(bin)/in_place $< $(bin)/simplify_xpath
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1132
|
aaronmk
|
$(bin)/in_place $< $(bin)/sort_map
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895
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aaronmk
|
touch $@
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1115
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aaronmk
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$(call review_,$<)
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895
|
aaronmk
|
else
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$(coreMaps): _always
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$(MAKE) $(@:%=.%.last_cleanup)
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endif
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| 40 |
350
|
aaronmk
|
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| 41 |
1140
|
aaronmk
|
##### Maps generated with join
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| 42 |
1115
|
aaronmk
|
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| 43 |
1270
|
aaronmk
|
join = env header_num=1 $(bin)/join_union_sort
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selfMap = $(bin)/cols 0 0
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1115
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aaronmk
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joinMaps :=
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| 48 |
1270
|
aaronmk
|
DwC2.ci-VegBIEN.specimens.csv: DwC2-VegBIEN.specimens.csv
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$(selfMap) <$<|$(bin)/ucase_first 0|$(join) $< >$@
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joinMaps += DwC2.ci-VegBIEN.specimens.csv
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DwC-VegBIEN.specimens.csv: DwC1-DwC2.specimens.csv DwC2.ci-VegBIEN.specimens.csv
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$(join) <$+ >$@
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1118
|
aaronmk
|
joinMaps += DwC-VegBIEN.specimens.csv
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| 56 |
1140
|
aaronmk
|
DwC.self.specimens.csv: DwC-VegBIEN.specimens.csv
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| 57 |
1270
|
aaronmk
|
$(selfMap) <$< >$@
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| 58 |
1140
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aaronmk
|
joinMaps += DwC.self.specimens.csv
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1115
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aaronmk
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join_maps: $(joinMaps) ;
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all += $(joinMaps)
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| 64 |
785
|
aaronmk
|
##### Maps generated with ch_root
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| 65 |
212
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aaronmk
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924
|
aaronmk
|
define chRoot
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$(bin)/ch_root <$< >$@
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| 68 |
1115
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aaronmk
|
$(review)
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| 69 |
924
|
aaronmk
|
endef
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| 70 |
197
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aaronmk
|
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| 71 |
924
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aaronmk
|
chRootMaps :=
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438
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aaronmk
|
VegX-VegBIEN.plots.csv: VegX-VegBIEN.organisms.csv
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| 74 |
188
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aaronmk
|
env \
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| 75 |
439
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aaronmk
|
left_in_root='/*s/individualOrganismObservation/*ID->/*s/plotObservation' \
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left_out_root='/*s/plotObservation' \
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525
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aaronmk
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right_in_root='/taxonoccurrence/*_id/locationevent' \
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right_out_root='/locationevent' \
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| 79 |
439
|
aaronmk
|
$(chRoot)
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| 80 |
924
|
aaronmk
|
chRootMaps += VegX-VegBIEN.plots.csv
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| 81 |
439
|
aaronmk
|
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| 82 |
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VegX-VegBIEN.stems.csv: VegX-VegBIEN.organisms.csv
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env \
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| 84 |
441
|
aaronmk
|
left_in_root='/*s/individualOrganismObservation->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]' \
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| 85 |
504
|
aaronmk
|
left_out_root='/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]' \
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| 86 |
681
|
aaronmk
|
right_in_root='/taxonoccurrence/aggregateoccurrence/*_id/plantobservation/stemobservation' \
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| 87 |
673
|
aaronmk
|
right_out_root='/stemobservation' \
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| 88 |
439
|
aaronmk
|
$(chRoot)
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| 89 |
924
|
aaronmk
|
chRootMaps += VegX-VegBIEN.plots.csv
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| 91 |
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ch_root_maps: $(chRootMaps) ;
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| 93 |
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all += $(chRootMaps)
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