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| Revision:
Name Size Revision Age Author Comment
  BIEN2 12779 almost 11 years Aaron Marcuse-Kubitza *{.sh,run}: use new begin_target instead of `ec...
  _archive 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
  _license 12225 almost 11 years Aaron Marcuse-Kubitza _license/non-open-source/applies_to.txt: clarif...
  backups 12176 almost 11 years Aaron Marcuse-Kubitza added backups/vegbien.r12025.backup.md5
  bin 12754 almost 11 years Aaron Marcuse-Kubitza bugfix: bin/repl: only use excluded_prefix_re/e...
  config 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
  derived 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
  exports 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
  inputs 12873 almost 11 years Aaron Marcuse-Kubitza bugfix: inputs/GBIF/table.run: switched to usin...
  issues 12124 almost 11 years Aaron Marcuse-Kubitza **/LICENSE.TXT: corrected "it recommended" to "...
  lib 12878 almost 11 years Aaron Marcuse-Kubitza bugfix: lib/runscripts/table.run: schema/make c...
  mappings 12039 almost 11 years Aaron Marcuse-Kubitza inputs/input.Makefile: verify/%.out: use a *.sq...
  planning 12613 almost 11 years Aaron Marcuse-Kubitza planning/meetings/BIEN conference call availabi...
  schemas 12874 almost 11 years Aaron Marcuse-Kubitza fix: schemas/util.sql: trim(): by default, casc...
  validation 12682 almost 11 years Aaron Marcuse-Kubitza validation/aggregating/plots/bien3_validations_...
  web 12704 almost 11 years Aaron Marcuse-Kubitza web/links/index.htm: updated to Firefox bookmar...
  wiki 12124 almost 11 years Aaron Marcuse-Kubitza **/LICENSE.TXT: corrected "it recommended" to "...
.htaccess 326 Bytes 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
.rsync_filter.upload 33 Bytes 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
.rsync_ignore 12 Bytes 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
LICENSE.TXT 6.18 KB 12124 almost 11 years Aaron Marcuse-Kubitza **/LICENSE.TXT: corrected "it recommended" to "...
Makefile 13.4 KB 12548 almost 11 years Aaron Marcuse-Kubitza /Makefile: added separate phppgadmin-Linux targ...
README.TXT 28.6 KB 12877 almost 11 years Aaron Marcuse-Kubitza /README.TXT: Maintenance: VegCore data dictiona...
fix_perms 97 Bytes 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
map 1001 Bytes 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
new_terms.csv 80.2 KB 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
run 499 Bytes 12779 almost 11 years Aaron Marcuse-Kubitza *{.sh,run}: use new begin_target instead of `ec...
unmapped_terms.csv 33 KB 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
  • svn:ignore: extern

Latest revisions

# Date Author Comment
12878 03/24/2014 01:43 AM Aaron Marcuse-Kubitza

bugfix: lib/runscripts/table.run: schema/make calls: need to use `make schema` instead because old-style datasources don't have a top-level runscript (the absence of this identifies them as old-style so inputs/input.Makefile works correctly)

12877 03/24/2014 01:21 AM Aaron Marcuse-Kubitza

/README.TXT: Maintenance: VegCore data dictionary: `make inputs/{NVS,SALVIAS,TEAM}/test`: recorded runtime (30 s)

12876 03/24/2014 01:17 AM Aaron Marcuse-Kubitza

/README.TXT: Maintenance: VegCore data dictionary: `make inputs/{NVS,SALVIAS,TEAM}/test`: prepended `time` to enable obtaining the runtime

12875 03/24/2014 01:11 AM Aaron Marcuse-Kubitza

/README.TXT: Maintenance: VegCore data dictionary: `inputs/run postprocess`: updated runtime (20 min)

12874 03/24/2014 12:45 AM Aaron Marcuse-Kubitza

fix: schemas/util.sql: trim(): by default, cascadingly drop dependent columns so that they don't prevent trim() from succeeding. note that this requires the dependent columns to then be manually re-created.

12873 03/23/2014 11:43 PM Aaron Marcuse-Kubitza

bugfix: inputs/GBIF/table.run: switched to using lib/runscripts/table.run instead of mysql.table.run because some subdirs (Source/) need the regular table.run to work properly. mysql.table.run should instead be used directly by subdirs that use the MySQL install.

12872 03/22/2014 06:20 AM Aaron Marcuse-Kubitza

bugfix: lib/sh/util.sh: DON'T do `shopt -s lastpipe` because this causes a segfault on Linux in stderr_matches(). (it also isn't supported on Mac.) use @PIPESTATUS instead. note that we do not currently need lastpipe, since we use @PIPESTATUS (which actually provides more functionality for our purposes).

12871 03/22/2014 06:02 AM Aaron Marcuse-Kubitza

fix: lib/sh/util.sh: echo_func(): file/line #: display with regular color because the lighter color actually draws attention to rather than away from the faded text

12870 03/22/2014 05:59 AM Aaron Marcuse-Kubitza

lib/sh/util.sh: added plain()

12869 03/22/2014 05:56 AM Aaron Marcuse-Kubitza

inputs/XAL/Specimen/test.xml.ref: updated for sample data.csv, which contains the columns as a CSV. this fixes a bug where a map.csv must be used on a table that contains the same set of columns (ie. not one with no columns if there are any mappings).

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