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| Revision:
Name Size Revision Age Author Comment
  BIEN2 12779 over 10 years Aaron Marcuse-Kubitza *{.sh,run}: use new begin_target instead of `ec...
  _archive 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
  _license 12225 almost 11 years Aaron Marcuse-Kubitza _license/non-open-source/applies_to.txt: clarif...
  backups 12176 almost 11 years Aaron Marcuse-Kubitza added backups/vegbien.r12025.backup.md5
  bin 12754 over 10 years Aaron Marcuse-Kubitza bugfix: bin/repl: only use excluded_prefix_re/e...
  config 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
  derived 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
  exports 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
  inputs 12882 over 10 years Aaron Marcuse-Kubitza inputs/run: postprocess(): updated runtime (20 ...
  issues 12124 almost 11 years Aaron Marcuse-Kubitza **/LICENSE.TXT: corrected "it recommended" to "...
  lib 12878 over 10 years Aaron Marcuse-Kubitza bugfix: lib/runscripts/table.run: schema/make c...
  mappings 12879 over 10 years Aaron Marcuse-Kubitza mappings/VegCore.htm: regenerated from wiki: re...
  planning 12613 over 10 years Aaron Marcuse-Kubitza planning/meetings/BIEN conference call availabi...
  schemas 12880 over 10 years Aaron Marcuse-Kubitza fix: schemas/VegCore/mk_derived: added `EOF` at...
  validation 12682 over 10 years Aaron Marcuse-Kubitza validation/aggregating/plots/bien3_validations_...
  web 12704 over 10 years Aaron Marcuse-Kubitza web/links/index.htm: updated to Firefox bookmar...
  wiki 12124 almost 11 years Aaron Marcuse-Kubitza **/LICENSE.TXT: corrected "it recommended" to "...
.htaccess 326 Bytes 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
.rsync_filter.upload 33 Bytes 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
.rsync_ignore 12 Bytes 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
LICENSE.TXT 6.18 KB 12124 almost 11 years Aaron Marcuse-Kubitza **/LICENSE.TXT: corrected "it recommended" to "...
Makefile 13.4 KB 12548 over 10 years Aaron Marcuse-Kubitza /Makefile: added separate phppgadmin-Linux targ...
README.TXT 29 KB 12881 over 10 years Aaron Marcuse-Kubitza /README.TXT: Schema changes: added steps to upd...
fix_perms 97 Bytes 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
map 1001 Bytes 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
new_terms.csv 80.2 KB 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
run 499 Bytes 12779 over 10 years Aaron Marcuse-Kubitza *{.sh,run}: use new begin_target instead of `ec...
unmapped_terms.csv 33 KB 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
  • svn:ignore: extern

Latest revisions

# Date Author Comment
12882 03/24/2014 05:02 PM Aaron Marcuse-Kubitza

inputs/run: postprocess(): updated runtime (20 min)

12881 03/24/2014 05:01 PM Aaron Marcuse-Kubitza

/README.TXT: Schema changes: added steps to update staging table column names on the local machine and vegbiendev

12880 03/24/2014 04:50 PM Aaron Marcuse-Kubitza

fix: schemas/VegCore/mk_derived: added `EOF` at end to avoid (benign) "here-document delimited by end-of-file" warnings on Linux

12879 03/24/2014 01:49 AM Aaron Marcuse-Kubitza

mappings/VegCore.htm: regenerated from wiki: rename specimenHolderInstitutions to specimen_duplicate_institutions, as decided in the 2014-03-13 conference call (wiki.vegpath.org/2014-03-13_conference_call#schema-changes-2). note that most schema changes (such as this one) involve mappings changes, which are handled automatically by `inputs/run postprocess; yes|make inputs/{NVS,SALVIAS,TEAM}/test`.

12878 03/24/2014 01:43 AM Aaron Marcuse-Kubitza

bugfix: lib/runscripts/table.run: schema/make calls: need to use `make schema` instead because old-style datasources don't have a top-level runscript (the absence of this identifies them as old-style so inputs/input.Makefile works correctly)

12877 03/24/2014 01:21 AM Aaron Marcuse-Kubitza

/README.TXT: Maintenance: VegCore data dictionary: `make inputs/{NVS,SALVIAS,TEAM}/test`: recorded runtime (30 s)

12876 03/24/2014 01:17 AM Aaron Marcuse-Kubitza

/README.TXT: Maintenance: VegCore data dictionary: `make inputs/{NVS,SALVIAS,TEAM}/test`: prepended `time` to enable obtaining the runtime

12875 03/24/2014 01:11 AM Aaron Marcuse-Kubitza

/README.TXT: Maintenance: VegCore data dictionary: `inputs/run postprocess`: updated runtime (20 min)

12874 03/24/2014 12:45 AM Aaron Marcuse-Kubitza

fix: schemas/util.sql: trim(): by default, cascadingly drop dependent columns so that they don't prevent trim() from succeeding. note that this requires the dependent columns to then be manually re-created.

12873 03/23/2014 11:43 PM Aaron Marcuse-Kubitza

bugfix: inputs/GBIF/table.run: switched to using lib/runscripts/table.run instead of mysql.table.run because some subdirs (Source/) need the regular table.run to work properly. mysql.table.run should instead be used directly by subdirs that use the MySQL install.

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