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Name Size Revision Age Author Comment
  logs 8801 over 11 years Aaron Marcuse-Kubitza inputs/input.Makefile: SVN: add, %/add: */logs:...
.map.csv.last_cleanup 0 Bytes 4118 over 12 years Aaron Marcuse-Kubitza inputs: Moved maps into subfolders, using the s...
VegBIEN.csv 42 Bytes 10260 over 11 years Aaron Marcuse-Kubitza inputs/*/ which do not contain any explicit col...
_no_import 0 Bytes 12030 almost 11 years Aaron Marcuse-Kubitza added inputs/XAL/Specimen/_no_import, since thi...
header.csv 0 Bytes 10260 over 11 years Aaron Marcuse-Kubitza inputs/*/ which do not contain any explicit col...
map.csv 1.91 KB 12879 over 10 years Aaron Marcuse-Kubitza mappings/VegCore.htm: regenerated from wiki: re...
new_terms.csv 1.6 KB 12879 over 10 years Aaron Marcuse-Kubitza mappings/VegCore.htm: regenerated from wiki: re...
run 63 Bytes 10260 over 11 years Aaron Marcuse-Kubitza inputs/*/ which do not contain any explicit col...
test.xml.ref 22.4 KB 12886 over 10 years Aaron Marcuse-Kubitza schemas/vegbien.sql: specimenreplicate.institut...
unmapped_terms.csv 147 Bytes 10423 over 11 years Aaron Marcuse-Kubitza bugfix: inputs/XAL/Specimen/, NY/Ecatalog_all/:...
  • svn:ignore: *

Latest revisions

# Date Author Comment
12886 03/24/2014 05:35 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: specimenreplicate.institution_id: renamed to duplicate_institutions_sourcelist_id, as decided in the conference calls (wiki.vegpath.org/2014-03-13_conference_call#schema-changes-2)

12879 03/24/2014 01:49 AM Aaron Marcuse-Kubitza

mappings/VegCore.htm: regenerated from wiki: rename specimenHolderInstitutions to specimen_duplicate_institutions, as decided in the 2014-03-13 conference call (wiki.vegpath.org/2014-03-13_conference_call#schema-changes-2). note that most schema changes (such as this one) involve mappings changes, which are handled automatically by `inputs/run postprocess; yes|make inputs/{NVS,SALVIAS,TEAM}/test`.

12869 03/22/2014 05:56 AM Aaron Marcuse-Kubitza

inputs/XAL/Specimen/test.xml.ref: updated for sample data.csv, which contains the columns as a CSV. this fixes a bug where a map.csv must be used on a table that contains the same set of columns (ie. not one with no columns if there are any mappings).

12030 02/02/2014 11:18 PM Aaron Marcuse-Kubitza

added inputs/XAL/Specimen/_no_import, since this is a demo-only datasource and there isn't a staging table for it

11970 01/20/2014 11:33 AM Aaron Marcuse-Kubitza

moved everything into /trunk/ to create the standard svn layout, for use with tools that require this (eg. git-svn). IMPORTANT: do NOT do an `svn up`. instead, re-use your working copy's existing files with `svn switch` (http://svnbook.red-bean.com/en/1.6/svn.ref.svn.c.switch.html).

10423 07/25/2013 06:27 PM Aaron Marcuse-Kubitza

bugfix: inputs/XAL/Specimen/, NY/Ecatalog_all/: *JulianDay: remapped to dayOfYear instead of day (the day of the month)

10260 07/11/2013 12:53 PM Aaron Marcuse-Kubitza

inputs/*/ which do not contain any explicit collisions (wiki.vegpath.org/2013-06-27_conference_call#To-do-for-Aaron > #3.2 > the following datasources ...): switched to new-style import, which adds the staging table column renaming

10257 07/11/2013 12:09 PM Aaron Marcuse-Kubitza

inputs/*/*/map.csv: added distinguishing #... suffix (e.g. UNUSED#institutionID) to the special terms OMIT, PRIVATE, UNUSED (VegCore.vegpath.org#Special-terms) to avoid creating a collision in the staging table renaming

10209 07/10/2013 02:32 AM Aaron Marcuse-Kubitza

inputs/*/*/map.csv for CSV tables with a row_num column: added missing row_num entry, which is needed by the staging table column renaming to make the order of the map.csv columns match the order in the staging table

9882 06/12/2013 10:49 AM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: genus->taxonlabel.taxonomicname: filter out genera that contain numbers (using new _filter_genus()), which break TNRS and prevent it from matching any other parts of the name. later, these genera can instead be moved to the end of the name, where TNRS will correctly match them as Unmatched_terms.

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