| 1 |
5459
|
aaronmk
|
root := .
|
| 2 |
3762
|
aaronmk
|
include lib/common.Makefile
|
| 3 |
|
|
|
| 4 |
|
|
|
| 5 |
784
|
aaronmk
|
##### Vars/functions
|
| 6 |
|
|
|
| 7 |
244
|
aaronmk
|
# Make
|
| 8 |
247
|
aaronmk
|
SHELL := /bin/bash
|
| 9 |
244
|
aaronmk
|
|
| 10 |
4607
|
aaronmk
|
# Paths
|
| 11 |
|
|
bin := bin
|
| 12 |
|
|
|
| 13 |
784
|
aaronmk
|
##### Environment
|
| 14 |
|
|
|
| 15 |
225
|
aaronmk
|
export PGOPTIONS = --client-min-messages=WARNING
|
| 16 |
|
|
|
| 17 |
784
|
aaronmk
|
##### General targets
|
| 18 |
225
|
aaronmk
|
|
| 19 |
1274
|
aaronmk
|
remake: _always clean
|
| 20 |
|
|
$(MAKE)
|
| 21 |
|
|
# re-run make so that cache of existing files is reset
|
| 22 |
|
|
|
| 23 |
784
|
aaronmk
|
##### Installation
|
| 24 |
241
|
aaronmk
|
|
| 25 |
6102
|
aaronmk
|
# public must be installed *after* inputs because some views depend on inputs
|
| 26 |
11896
|
aaronmk
|
install: _always config core mysql inputs/download/live inputs/install \
|
| 27 |
8081
|
aaronmk
|
schemas/public/install test
|
| 28 |
241
|
aaronmk
|
@$(done)
|
| 29 |
202
|
aaronmk
|
|
| 30 |
6200
|
aaronmk
|
uninstall: _always rm_mysql rm_core ;
|
| 31 |
241
|
aaronmk
|
|
| 32 |
418
|
aaronmk
|
reinstall: _always uninstall install ;
|
| 33 |
225
|
aaronmk
|
|
| 34 |
9742
|
aaronmk
|
##### config: live and test environments
|
| 35 |
|
|
|
| 36 |
|
|
config: _always
|
| 37 |
|
|
mkdir -p ~/bin
|
| 38 |
11844
|
aaronmk
|
-ln -s $(realpath bin/make) ~/bin
|
| 39 |
|
|
# ignore errors if file exists
|
| 40 |
9742
|
aaronmk
|
|
| 41 |
784
|
aaronmk
|
##### Core: VegBIEN DB and dependencies
|
| 42 |
202
|
aaronmk
|
|
| 43 |
8817
|
aaronmk
|
core: _always $(call forOs,apache python php postgres misc) db
|
| 44 |
241
|
aaronmk
|
@$(done)
|
| 45 |
235
|
aaronmk
|
|
| 46 |
1746
|
aaronmk
|
rm_core: _always rm_db ;
|
| 47 |
241
|
aaronmk
|
|
| 48 |
418
|
aaronmk
|
reinstall_core: _always rm_core core ;
|
| 49 |
241
|
aaronmk
|
|
| 50 |
8817
|
aaronmk
|
##### Apache
|
| 51 |
|
|
|
| 52 |
|
|
apache-Linux: _always
|
| 53 |
|
|
# Apache 2.4
|
| 54 |
8818
|
aaronmk
|
-sudo apt-get --yes install python-software-properties
|
| 55 |
|
|
-sudo apt-add-repository ppa:ptn107/apache
|
| 56 |
|
|
-sudo apt-add-repository ppa:nathan-renniewaldock/apache2.4-php
|
| 57 |
|
|
-sudo apt-get update
|
| 58 |
|
|
-sudo apt-get --yes install apache2
|
| 59 |
|
|
-sudo apt-get --yes purge libapache2-mod-php5
|
| 60 |
|
|
-sudo apt-get --yes install libapache2-mod-php5
|
| 61 |
8817
|
aaronmk
|
|
| 62 |
|
|
apache-Darwin: _always ;
|
| 63 |
|
|
|
| 64 |
784
|
aaronmk
|
##### Python
|
| 65 |
|
|
|
| 66 |
383
|
aaronmk
|
python-Linux: _always
|
| 67 |
6544
|
aaronmk
|
-sudo apt-get --yes install python
|
| 68 |
|
|
-sudo apt-get --yes install python3
|
| 69 |
|
|
-sudo apt-get --yes install python-dev
|
| 70 |
|
|
-sudo apt-get --yes install python-dateutil
|
| 71 |
|
|
-sudo apt-get --yes install python-parallel
|
| 72 |
|
|
-sudo apt-get --yes install python-profiler
|
| 73 |
|
|
-sudo apt-get --yes install python-pip
|
| 74 |
|
|
-sudo apt-get --yes install pymetrics
|
| 75 |
3156
|
aaronmk
|
-sudo pip install ordereddict
|
| 76 |
1845
|
aaronmk
|
-sudo pip install pp
|
| 77 |
284
|
aaronmk
|
|
| 78 |
383
|
aaronmk
|
python-Darwin: _always
|
| 79 |
7230
|
aaronmk
|
@# Python 2 comes preinstalled
|
| 80 |
6190
|
aaronmk
|
@echo $(emph)'Installing Python 3.2 on Mac OS X:'$(endEmph)
|
| 81 |
|
|
@echo 'Download it: http://www.python.org/ftp/python/3.2.3/python-3.2.3-macosx10.6.dmg'
|
| 82 |
|
|
@echo 'Open the disk image'
|
| 83 |
|
|
@echo 'Run the installer in it'
|
| 84 |
|
|
@$(wait)
|
| 85 |
284
|
aaronmk
|
@echo $(emph)'Installing python-dateutil on Mac OS X:'$(endEmph)
|
| 86 |
7231
|
aaronmk
|
@echo 'Download it for Python 2: http://labix.org/download/python-dateutil/python-dateutil-1.5.tar.gz'
|
| 87 |
284
|
aaronmk
|
@echo 'Extract the archive'
|
| 88 |
|
|
@echo 'Change to the directory of the extracted files'
|
| 89 |
|
|
@echo 'Run python setup.py build'
|
| 90 |
|
|
@echo 'Run sudo python setup.py install'
|
| 91 |
|
|
@echo "Run python -c 'import dateutil'"
|
| 92 |
7231
|
aaronmk
|
@echo 'Download it for Python 3: http://labix.org/download/python-dateutil/python-dateutil-2.0.tar.gz'
|
| 93 |
|
|
@echo 'Extract the archive'
|
| 94 |
|
|
@echo 'Change to the directory of the extracted files'
|
| 95 |
|
|
@echo 'Run python3 setup.py build'
|
| 96 |
|
|
@echo 'Run sudo python3 setup.py install'
|
| 97 |
|
|
@echo "Run python3 -c 'import dateutil'"
|
| 98 |
284
|
aaronmk
|
@$(wait)
|
| 99 |
3156
|
aaronmk
|
@echo $(emph)'Installing pip on Mac OS X:'$(endEmph)
|
| 100 |
|
|
@echo 'Follow the instructions at http://www.pip-installer.org/en/latest/installing.html'
|
| 101 |
|
|
@$(wait)
|
| 102 |
284
|
aaronmk
|
|
| 103 |
1599
|
aaronmk
|
##### PHP
|
| 104 |
|
|
|
| 105 |
|
|
php-Linux: _always
|
| 106 |
6544
|
aaronmk
|
-sudo apt-get --yes install php-http-request
|
| 107 |
1599
|
aaronmk
|
|
| 108 |
|
|
php-Darwin: _always
|
| 109 |
1600
|
aaronmk
|
@echo $(emph)'Installing PHP PEAR and HTTP_Request on Mac OS X:'$(endEmph)
|
| 110 |
|
|
@echo 'Download http://pear.php.net/go-pear.phar'
|
| 111 |
|
|
@echo 'Change to the directory of the downloaded file'
|
| 112 |
|
|
@echo 'Run php -d detect_unicode=0 go-pear.phar'
|
| 113 |
|
|
@echo 'Whenever prompted, press Enter to select default options'
|
| 114 |
|
|
@echo 'Add $$HOME/pear/bin to your $$PATH'
|
| 115 |
|
|
@echo 'Add $(HOME)/pear/share/pear to your php.ini include_path'
|
| 116 |
1665
|
aaronmk
|
@echo 'If needed, set $$PHPRC to your php.ini'
|
| 117 |
1600
|
aaronmk
|
@echo "Run pear install HTTP_Request"
|
| 118 |
|
|
@echo 'To run a php command: php -c <php.ini-path> ...'
|
| 119 |
1599
|
aaronmk
|
@$(wait)
|
| 120 |
|
|
|
| 121 |
784
|
aaronmk
|
##### PostgreSQL
|
| 122 |
|
|
|
| 123 |
6824
|
aaronmk
|
define editPhppgadmin
|
| 124 |
6853
|
aaronmk
|
-sudo patch /etc/phppgadmin/config.inc.php lib/phpPgAdmin.config.inc.php.diff
|
| 125 |
6824
|
aaronmk
|
sudo cp -n /usr/share/phppgadmin/login.php /usr/share/phppgadmin/login.php.old
|
| 126 |
6853
|
aaronmk
|
-sudo patch /usr/share/phppgadmin/login.php lib/phpPgAdmin.login.php.diff
|
| 127 |
6824
|
aaronmk
|
endef
|
| 128 |
6853
|
aaronmk
|
# ignore errors if patch has already been applied
|
| 129 |
6824
|
aaronmk
|
|
| 130 |
1970
|
aaronmk
|
editPhppgadminApacheConf = echo $$'1\n,s/deny from all/allow from all/\nwq'|\
|
| 131 |
336
|
aaronmk
|
sudo ed --loose-exit-status --verbose /etc/phppgadmin/apache.conf
|
| 132 |
334
|
aaronmk
|
|
| 133 |
|
|
apacheConf := /etc/apache2/apache2.conf
|
| 134 |
|
|
apacheConfPhppgadminLine := Include /etc/phppgadmin/apache.conf
|
| 135 |
|
|
editApacheConfForPhppgadmin =\
|
| 136 |
|
|
$(if $(shell grep -F "$(apacheConfPhppgadminLine)" $(apacheConf)),,\
|
| 137 |
|
|
$(call sudoAppend,$(apacheConf),\n$(apacheConfPhppgadminLine)))
|
| 138 |
|
|
|
| 139 |
335
|
aaronmk
|
nonApacheOnPort80 = $(shell sudo lsof -i :80|tail -n +2|grep -v -F apache2)
|
| 140 |
336
|
aaronmk
|
editApachePortsConf = echo $$'1\n,s/\\b80\\b/8080/g\nwq'|\
|
| 141 |
|
|
sudo ed --loose-exit-status --verbose /etc/apache2/ports.conf
|
| 142 |
334
|
aaronmk
|
|
| 143 |
6337
|
aaronmk
|
asBien := sudo -E -u bien
|
| 144 |
4752
|
aaronmk
|
pgVersion = "$$(env minor=1 bin/pg_version)"
|
| 145 |
|
|
|
| 146 |
11662
|
aaronmk
|
linuxPostgresDir := /etc/postgresql/9.3/main
|
| 147 |
6201
|
aaronmk
|
define pg_ctl-Linux
|
| 148 |
|
|
$(asAdmin) /etc/init.d/postgresql $(1)
|
| 149 |
|
|
endef
|
| 150 |
6198
|
aaronmk
|
|
| 151 |
11662
|
aaronmk
|
macPostgresDir := /Library/PostgreSQL/9.3
|
| 152 |
6187
|
aaronmk
|
define macUsePostgresLib
|
| 153 |
|
|
sudo mv $(libDest) $(libDest).old||sudo rm -f $(libDest)
|
| 154 |
6196
|
aaronmk
|
sudo ln -s $(macPostgresDir)/lib/$(1) $(libDest)
|
| 155 |
6187
|
aaronmk
|
|
| 156 |
|
|
endef
|
| 157 |
|
|
libDest = /usr/lib/$(1)
|
| 158 |
|
|
|
| 159 |
11675
|
aaronmk
|
macPostgresLibs := libcrypto libcrypto.1.0.0 libssl libssl.1.0.0 libpq.5
|
| 160 |
6187
|
aaronmk
|
macPostgresLibs := $(macPostgresLibs:%=%.dylib)
|
| 161 |
|
|
|
| 162 |
6201
|
aaronmk
|
define pg_ctl-Darwin
|
| 163 |
11662
|
aaronmk
|
$(asAdmin) pg_ctl -D $(macPostgresDir)/data -l $(macPostgresDir)/data/postgres.log $(1)
|
| 164 |
6201
|
aaronmk
|
sleep 2
|
| 165 |
|
|
endef
|
| 166 |
6197
|
aaronmk
|
|
| 167 |
13011
|
aaronmk
|
postgres_restart: _always
|
| 168 |
|
|
@echo $(call pg_ctl-$(os),restart)
|
| 169 |
|
|
|
| 170 |
6503
|
aaronmk
|
confirmPostgresReload = $(call confirm,Modifying postgresql.conf and pg_hba.conf)
|
| 171 |
|
|
|
| 172 |
6333
|
aaronmk
|
define postgresReload-Linux
|
| 173 |
6503
|
aaronmk
|
@$(confirmPostgresReload)
|
| 174 |
|
|
@echo $(emph)'kernel.shmmax must be set to at least 4GB minus 1 byte:'$(endEmph)
|
| 175 |
|
|
@echo 'Append the following to /etc/sysctl.conf:'
|
| 176 |
|
|
@echo 'kernel.shmmax=4294967295'
|
| 177 |
|
|
@$(wait)
|
| 178 |
6447
|
aaronmk
|
chmod a+r schemas/*.conf || $(asBien) chmod a+r schemas/*.conf
|
| 179 |
6823
|
aaronmk
|
-$(asAdmin) mv -n $(linuxPostgresDir)/postgresql.conf $(linuxPostgresDir)/postgresql.conf.old
|
| 180 |
6333
|
aaronmk
|
$(asAdmin) cp --preserve=timestamps schemas/postgresql.conf $(linuxPostgresDir)/postgresql.conf
|
| 181 |
6823
|
aaronmk
|
-$(asAdmin) mv -n $(linuxPostgresDir)/pg_hba.conf $(linuxPostgresDir)/pg_hba.conf.old
|
| 182 |
6335
|
aaronmk
|
$(asAdmin) cp --preserve=timestamps schemas/pg_hba.conf $(linuxPostgresDir)/pg_hba.conf
|
| 183 |
8627
|
aaronmk
|
@echo $(emph)'restart PostgreSQL manually:'$(endEmph)
|
| 184 |
|
|
@echo $(call pg_ctl-Linux,restart)
|
| 185 |
|
|
@$(wait)
|
| 186 |
6333
|
aaronmk
|
|
| 187 |
|
|
endef
|
| 188 |
|
|
|
| 189 |
|
|
define postgresReload-Darwin
|
| 190 |
6503
|
aaronmk
|
@$(confirmPostgresReload)
|
| 191 |
6336
|
aaronmk
|
chmod a+r schemas/*.conf
|
| 192 |
6823
|
aaronmk
|
-$(asAdmin) mv -n $(macPostgresDir)/data/postgresql.conf $(macPostgresDir)/data/postgresql.conf.old
|
| 193 |
6333
|
aaronmk
|
$(asAdmin) cp schemas/postgresql.Mac.conf $(macPostgresDir)/data/postgresql.conf
|
| 194 |
6823
|
aaronmk
|
-$(asAdmin) mv -n $(macPostgresDir)/data/pg_hba.conf $(macPostgresDir)/data/pg_hba.conf.old
|
| 195 |
6335
|
aaronmk
|
$(asAdmin) cp schemas/pg_hba.Mac.conf $(macPostgresDir)/data/pg_hba.conf
|
| 196 |
10121
|
aaronmk
|
-$(asAdmin) mv -n $(macPostgresDir)/data/pg_ident.conf $(macPostgresDir)/data/pg_ident.conf.old
|
| 197 |
|
|
$(asAdmin) cp schemas/pg_ident.Mac.conf $(macPostgresDir)/data/pg_ident.conf
|
| 198 |
6333
|
aaronmk
|
$(call pg_ctl-Darwin,restart)
|
| 199 |
|
|
|
| 200 |
|
|
endef
|
| 201 |
|
|
|
| 202 |
6334
|
aaronmk
|
postgres_reload: _always
|
| 203 |
|
|
$($(call forOs,postgresReload))
|
| 204 |
|
|
|
| 205 |
12548
|
aaronmk
|
phppgadmin-Linux: _always
|
| 206 |
|
|
-sudo apt-get --yes install phppgadmin
|
| 207 |
|
|
$(editPhppgadmin)
|
| 208 |
|
|
$(editPhppgadminApacheConf)
|
| 209 |
|
|
-sudo ln -s ../conf.d/phppgadmin /etc/apache2/conf-available/phppgadmin.conf
|
| 210 |
|
|
sudo a2enconf phppgadmin
|
| 211 |
|
|
$(editApacheConfForPhppgadmin)
|
| 212 |
|
|
$(if $(nonApacheOnPort80),$(editApachePortsConf))
|
| 213 |
|
|
-sudo apache2ctl restart
|
| 214 |
|
|
|
| 215 |
6333
|
aaronmk
|
postgres-Linux: _always
|
| 216 |
11673
|
aaronmk
|
echo|sudo add-apt-repository ppa:pitti/postgresql # PostgreSQL 9.2 apt-src
|
| 217 |
11671
|
aaronmk
|
sudo tee /etc/apt/sources.list.d/pgdg.list \
|
| 218 |
11661
|
aaronmk
|
<<<"deb http://apt.postgresql.org/pub/repos/apt/ $$(lsb_release --short --codename)-pgdg main"
|
| 219 |
|
|
wget --quiet -O - http://apt.postgresql.org/pub/repos/apt/ACCC4CF8.asc | sudo apt-key add -
|
| 220 |
11672
|
aaronmk
|
-sudo apt-get update
|
| 221 |
11661
|
aaronmk
|
sudo update-alternatives --remove postmaster.1.gz /usr/share/postgresql/9.1/man/man1/postmaster.1.gz
|
| 222 |
|
|
-sudo apt-get --yes install postgresql-9.3
|
| 223 |
|
|
-sudo apt-get --yes install postgresql-contrib-$(pgVersion)
|
| 224 |
6544
|
aaronmk
|
-sudo apt-get --yes install postgresql-plpython3-$(pgVersion)
|
| 225 |
|
|
-sudo apt-get --yes install libpq-dev
|
| 226 |
11669
|
aaronmk
|
-sudo apt-get --yes install postgresql-$(pgVersion)-postgis-scripts
|
| 227 |
6544
|
aaronmk
|
-sudo apt-get --yes install postgresql-$(pgVersion)-postgis
|
| 228 |
12548
|
aaronmk
|
-$(MAKE) phppgadmin-Linux
|
| 229 |
6333
|
aaronmk
|
-sudo pip install psycopg2
|
| 230 |
6503
|
aaronmk
|
-$(MAKE) $(postgresReload-Linux)
|
| 231 |
6333
|
aaronmk
|
# run pg_version inline because it needs postgresql to be installed first
|
| 232 |
|
|
# ignore errors if conf files already edited
|
| 233 |
|
|
|
| 234 |
383
|
aaronmk
|
postgres-Darwin: _always
|
| 235 |
254
|
aaronmk
|
@echo $(emph)'Installing PostgreSQL on Mac OS X:'$(endEmph)
|
| 236 |
|
|
@echo 'Download it using the topmost "Mac OS X" link at http://http://www.enterprisedb.com/products-services-training/pgdownload'
|
| 237 |
|
|
@echo 'Open the disk image'
|
| 238 |
|
|
@echo 'Run the installer in it'
|
| 239 |
|
|
@$(wait)
|
| 240 |
6187
|
aaronmk
|
$(foreach lib,$(macPostgresLibs),$(call macUsePostgresLib,$(lib)))
|
| 241 |
11674
|
aaronmk
|
-sudo easy_install psycopg2
|
| 242 |
11845
|
aaronmk
|
-$(postgresReload-Darwin)
|
| 243 |
235
|
aaronmk
|
|
| 244 |
418
|
aaronmk
|
postgres-: _always ; # other OSes
|
| 245 |
241
|
aaronmk
|
|
| 246 |
2624
|
aaronmk
|
psqlAsAdminVegbien := $(psqlAsAdmin) vegbien
|
| 247 |
272
|
aaronmk
|
bienPassword := $(shell cat config/bien_password)
|
| 248 |
6331
|
aaronmk
|
bienReadPassword := $(shell cat config/bien_read_password)
|
| 249 |
241
|
aaronmk
|
|
| 250 |
7422
|
aaronmk
|
##### Misc.
|
| 251 |
|
|
|
| 252 |
7423
|
aaronmk
|
misc-Linux: _always
|
| 253 |
|
|
cp -p "$(shell which dotlockfile)" bin/
|
| 254 |
7422
|
aaronmk
|
|
| 255 |
|
|
misc-Darwin: _always ;
|
| 256 |
|
|
|
| 257 |
784
|
aaronmk
|
##### VegBIEN DB
|
| 258 |
241
|
aaronmk
|
|
| 259 |
6331
|
aaronmk
|
#### DB and users
|
| 260 |
1967
|
aaronmk
|
|
| 261 |
2090
|
aaronmk
|
confirmRmDb = $(call confirm,WARNING: This will delete your entire VegBIEN\
|
| 262 |
3374
|
aaronmk
|
DB!,This includes all archived imports and staging tables.)
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| 263 |
2089
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aaronmk
|
|
| 264 |
2633
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aaronmk
|
confirmRmPublicSchema = $(call confirm,WARNING: This will delete the current\
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| 265 |
|
|
public schema of your VegBIEN DB!,To save it: make schemas/rotate)
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| 266 |
2089
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aaronmk
|
|
| 267 |
2091
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aaronmk
|
rmPublicSchema := $(call rmSchemaCmd,public)
|
| 268 |
1967
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aaronmk
|
|
| 269 |
8844
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aaronmk
|
db: mk_db rm_initial_public schemas/install _always ;
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| 270 |
1967
|
aaronmk
|
|
| 271 |
|
|
mk_db: _always
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| 272 |
6822
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aaronmk
|
-echo "CREATE USER public_;"|$(psqlAsAdmin)
|
| 273 |
1745
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aaronmk
|
-echo "CREATE USER bien PASSWORD '$(bienPassword)';"|$(psqlAsAdmin)
|
| 274 |
6331
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aaronmk
|
-echo "CREATE USER bien_read PASSWORD '$(bienReadPassword)' IN ROLE bien \
|
| 275 |
|
|
NOINHERIT;"|$(psqlAsAdmin)
|
| 276 |
2037
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aaronmk
|
-echo "CREATE DATABASE vegbien WITH OWNER bien TEMPLATE template1 \
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| 277 |
1940
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aaronmk
|
ENCODING 'UTF8' LC_COLLATE 'en_US.UTF-8' LC_CTYPE 'en_US.UTF-8';"|$(psqlAsAdmin)
|
| 278 |
6221
|
aaronmk
|
-echo "CREATE EXTENSION hstore SCHEMA pg_catalog;"|$(psqlAsAdminVegbien)
|
| 279 |
10126
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aaronmk
|
-$(asAdmin) createlang -U postgres plpython3u vegbien
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| 280 |
11150
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aaronmk
|
# unset ON_ERROR_STOP so user-exists errors don't prevent further user-adds
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| 281 |
|
|
-cat config/users.sql|$(psqlAsAdmin) --set ON_ERROR_STOP
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| 282 |
2627
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aaronmk
|
# ignore errors if user/database/etc. exists
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| 283 |
2091
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aaronmk
|
|
| 284 |
|
|
rm_initial_public: _always
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| 285 |
2089
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aaronmk
|
@$(confirmRmPublicSchema)
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| 286 |
2624
|
aaronmk
|
echo $(rmPublicSchema)|$(psqlAsAdminVegbien)
|
| 287 |
1967
|
aaronmk
|
# drop public schema *as admin* because it starts out owned by postgres
|
| 288 |
241
|
aaronmk
|
|
| 289 |
383
|
aaronmk
|
rm_db: _always
|
| 290 |
1748
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aaronmk
|
@$(confirmRmDb)
|
| 291 |
|
|
echo "DROP DATABASE IF EXISTS vegbien;"|$(psqlAsAdmin)
|
| 292 |
6331
|
aaronmk
|
echo "DROP USER IF EXISTS bien_read;"|$(psqlAsAdmin)
|
| 293 |
1748
|
aaronmk
|
echo "DROP USER IF EXISTS bien;"|$(psqlAsAdmin)
|
| 294 |
6822
|
aaronmk
|
echo "DROP USER IF EXISTS public_;"|$(psqlAsAdmin)
|
| 295 |
241
|
aaronmk
|
|
| 296 |
418
|
aaronmk
|
reinstall_db: _always rm_db db ;
|
| 297 |
241
|
aaronmk
|
|
| 298 |
784
|
aaronmk
|
##### MySQL
|
| 299 |
241
|
aaronmk
|
|
| 300 |
7572
|
aaronmk
|
mysql: _always $(call forOs,mysql) mysql_users
|
| 301 |
241
|
aaronmk
|
@$(done)
|
| 302 |
|
|
|
| 303 |
7572
|
aaronmk
|
rm_mysql: _always rm_mysql_users ;
|
| 304 |
241
|
aaronmk
|
|
| 305 |
383
|
aaronmk
|
mysql-Linux: _always
|
| 306 |
244
|
aaronmk
|
@echo $(emph)"If asked for MySQL root password, enter $(bienPassword)"$(endEmph)
|
| 307 |
238
|
aaronmk
|
@$(wait)
|
| 308 |
7574
|
aaronmk
|
-sudo apt-get --yes install mysql-server
|
| 309 |
|
|
-sudo apt-get --yes install mysql-client
|
| 310 |
10223
|
aaronmk
|
-sudo apt-get --yes install mysql-workbench
|
| 311 |
7574
|
aaronmk
|
-sudo apt-get --yes install python-mysqldb
|
| 312 |
7575
|
aaronmk
|
-sudo apt-get --yes install phpmyadmin
|
| 313 |
235
|
aaronmk
|
|
| 314 |
383
|
aaronmk
|
mysql-Darwin: _always
|
| 315 |
244
|
aaronmk
|
@echo $(emph)'Installing MySQLdb Python driver on Mac OS X 10.7 (may work on other versions):'$(endEmph)
|
| 316 |
235
|
aaronmk
|
@echo 'Download it using "latest version" link at http://sourceforge.net/projects/mysql-python/files/'
|
| 317 |
|
|
@echo 'Extract the archive'
|
| 318 |
|
|
@echo '(From http://www.rustyrazorblade.com/2011/11/installing-mysqldb-on-macos-lion/:)'
|
| 319 |
284
|
aaronmk
|
@echo 'Run ln -s /usr/local/mysql/lib/libmysqlclient.18.dylib /usr/lib/libmysqlclient.18.dylib'
|
| 320 |
|
|
@echo 'Run ln -s /usr/local/mysql/lib /usr/local/mysql/lib/mysql'
|
| 321 |
235
|
aaronmk
|
@echo '(From http://blog.infoentropy.com/MySQL-python_EnvironmentError_mysql_config_not_found:)'
|
| 322 |
|
|
@echo 'Edit site.cfg and change the line like "mysql_config = " to "mysql_config = /usr/local/mysql/bin/mysql_config"'
|
| 323 |
|
|
@echo '(From http://www.mangoorange.com/2008/08/01/installing-python-mysqldb-122-on-mac-os-x/:)'
|
| 324 |
|
|
@echo 'Change to the directory of the extracted files'
|
| 325 |
284
|
aaronmk
|
@echo 'Run python setup.py clean'
|
| 326 |
|
|
@echo 'Run python setup.py build'
|
| 327 |
235
|
aaronmk
|
@echo 'Run sudo python setup.py install'
|
| 328 |
|
|
@echo "Run python -c 'import MySQLdb'"
|
| 329 |
238
|
aaronmk
|
@$(wait)
|
| 330 |
235
|
aaronmk
|
|
| 331 |
383
|
aaronmk
|
mysql-: _always # other OSes
|
| 332 |
235
|
aaronmk
|
|
| 333 |
247
|
aaronmk
|
mysqlAsRoot := mysql --user=root --password='$(bienPassword)'
|
| 334 |
235
|
aaronmk
|
|
| 335 |
7572
|
aaronmk
|
mysql_users: _always
|
| 336 |
7573
|
aaronmk
|
-echo "CREATE USER 'bien'@'localhost' IDENTIFIED BY '$(bienPassword)';"\
|
| 337 |
|
|
|$(mysqlAsRoot)
|
| 338 |
|
|
-echo "CREATE USER 'bien_read'@'%' IDENTIFIED BY '$(bienReadPassword)';"\
|
| 339 |
|
|
|$(mysqlAsRoot)
|
| 340 |
364
|
aaronmk
|
# ignore errors if user exists
|
| 341 |
202
|
aaronmk
|
|
| 342 |
7572
|
aaronmk
|
rm_mysql_users: _always
|
| 343 |
7573
|
aaronmk
|
-echo "DROP USER 'bien_read'@'localhost';"|$(mysqlAsRoot)
|
| 344 |
|
|
-echo "DROP USER 'bien'@'%';"|$(mysqlAsRoot)
|
| 345 |
364
|
aaronmk
|
# ignore errors if user exists
|
| 346 |
202
|
aaronmk
|
|
| 347 |
784
|
aaronmk
|
##### Datasources
|
| 348 |
202
|
aaronmk
|
|
| 349 |
418
|
aaronmk
|
inputs: _always inputs/all ;
|
| 350 |
245
|
aaronmk
|
|
| 351 |
7268
|
aaronmk
|
import: _always import-msg inputs/import_scrub ;
|
| 352 |
1542
|
aaronmk
|
import-msg: _always
|
| 353 |
1550
|
aaronmk
|
@echo $(emph)"To import all inputs at once:"$(endEmph) . bin/import_all
|
| 354 |
1542
|
aaronmk
|
@echo
|
| 355 |
250
|
aaronmk
|
|
| 356 |
7836
|
aaronmk
|
scrub: _always inputs/.TNRS/tnrs/tnrs-remake ;
|
| 357 |
7264
|
aaronmk
|
|
| 358 |
1458
|
aaronmk
|
verify: _always inputs/verify
|
| 359 |
1241
|
aaronmk
|
@$(done)
|
| 360 |
386
|
aaronmk
|
|
| 361 |
1458
|
aaronmk
|
test: _always inputs/test
|
| 362 |
397
|
aaronmk
|
@$(done)
|
| 363 |
1458
|
aaronmk
|
|
| 364 |
|
|
##### Testing
|
| 365 |
|
|
|
| 366 |
1743
|
aaronmk
|
test-all: _always remake test missing_mappings
|
| 367 |
1458
|
aaronmk
|
@$(done)
|
| 368 |
1967
|
aaronmk
|
|
| 369 |
|
|
##### Subdir forwarding
|
| 370 |
|
|
|
| 371 |
|
|
# Must come last so overridden targets are not forwarded
|
| 372 |
|
|
|
| 373 |
|
|
define subdirTargets
|
| 374 |
|
|
$(subdir): _always
|
| 375 |
|
|
+$$(subMake)
|
| 376 |
|
|
|
| 377 |
|
|
$(subdir)%: _always
|
| 378 |
|
|
+$$(subMake)
|
| 379 |
|
|
.PRECIOUS: $(subdir)% # let subdir's Makefile decide whether to delete on error
|
| 380 |
|
|
|
| 381 |
|
|
$(subdir)reinstall: _always $(subdir)uninstall $(subdir)install ;
|
| 382 |
|
|
endef
|
| 383 |
|
|
$(foreach subdir,$(wildcard */),$(eval $(subdirTargets)))
|
| 384 |
|
|
|
| 385 |
|
|
Makefile: ;
|
| 386 |
|
|
|
| 387 |
|
|
%: $(addsuffix %,$(dir $(shell echo */Makefile))) _always ;
|
| 388 |
1999
|
aaronmk
|
|
| 389 |
11848
|
aaronmk
|
#### Overrides of forwarded commands
|
| 390 |
|
|
|
| 391 |
11862
|
aaronmk
|
# commented out to avoid a cascade of "overriding commands for target" warnings
|
| 392 |
|
|
#inputs/reinstall: _always
|
| 393 |
|
|
# echo '. bin/reinstall_all; wait'|bash -s
|
| 394 |
11848
|
aaronmk
|
|
| 395 |
1999
|
aaronmk
|
#### Maps validation
|
| 396 |
|
|
|
| 397 |
4607
|
aaronmk
|
termsSubdirs := $(call no/,$(call wildcard/,inputs/*/))
|
| 398 |
|
|
|
| 399 |
3764
|
aaronmk
|
include lib/mappings.Makefile
|
