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12922
|
aaronmk
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--
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| 2 |
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-- PostgreSQL database dump
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--
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SET statement_timeout = 0;
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SET lock_timeout = 0;
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SET client_encoding = 'UTF8';
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SET standard_conforming_strings = on;
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SET check_function_bodies = false;
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SET client_min_messages = warning;
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SET search_path = "NY", pg_catalog;
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--
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-- Name: _specimens_01_count_of_total_records_specimens_in_source_db; Type: VIEW; Schema: NY; Owner: -
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| 16 |
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--
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| 17 |
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| 18 |
13374
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aaronmk
|
CREATE OR REPLACE VIEW _specimens_01_count_of_total_records_specimens_in_source_db AS
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| 19 |
12922
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aaronmk
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SELECT count(*) AS "totalSpecimenRecords"
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FROM "Ecatalog_all";
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| 21 |
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| 22 |
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| 23 |
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--
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| 24 |
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-- Name: VIEW _specimens_01_count_of_total_records_specimens_in_source_db; Type: COMMENT; Schema: NY; Owner: -
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| 25 |
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--
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| 26 |
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COMMENT ON VIEW _specimens_01_count_of_total_records_specimens_in_source_db IS '
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Check: should return 1 row
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';
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| 30 |
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| 31 |
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| 32 |
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--
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| 33 |
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-- Name: _specimens_02_count_of_unique_verbatim_families; Type: VIEW; Schema: NY; Owner: -
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| 34 |
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--
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| 35 |
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13374
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aaronmk
|
CREATE OR REPLACE VIEW _specimens_02_count_of_unique_verbatim_families AS
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12922
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aaronmk
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SELECT count(DISTINCT "Ecatalog_all".family) AS families
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FROM "Ecatalog_all"
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WHERE ("Ecatalog_all".family IS NOT NULL);
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| 40 |
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| 41 |
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| 42 |
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--
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| 43 |
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-- Name: VIEW _specimens_02_count_of_unique_verbatim_families; Type: COMMENT; Schema: NY; Owner: -
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| 44 |
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--
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| 45 |
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| 46 |
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COMMENT ON VIEW _specimens_02_count_of_unique_verbatim_families IS '
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Check: should return 1 row
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| 48 |
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';
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| 49 |
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| 50 |
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| 51 |
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--
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| 52 |
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-- Name: _specimens_03_list_of_verbatim_families; Type: VIEW; Schema: NY; Owner: -
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| 53 |
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--
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| 54 |
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| 55 |
13374
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aaronmk
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CREATE OR REPLACE VIEW _specimens_03_list_of_verbatim_families AS
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| 56 |
13089
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aaronmk
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SELECT DISTINCT "Ecatalog_all".family
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| 57 |
12922
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aaronmk
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FROM "Ecatalog_all"
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WHERE (("Ecatalog_all".genus IS NOT NULL) AND ("Ecatalog_all"."specificEpithet" IS NOT NULL));
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| 59 |
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| 60 |
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| 61 |
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--
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| 62 |
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-- Name: VIEW _specimens_03_list_of_verbatim_families; Type: COMMENT; Schema: NY; Owner: -
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| 63 |
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--
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| 64 |
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| 65 |
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COMMENT ON VIEW _specimens_03_list_of_verbatim_families IS '
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Check: should return same number of rows
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';
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| 68 |
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| 69 |
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| 70 |
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--
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| 71 |
13041
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aaronmk
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-- Name: _specimens_04_count_of_species_binomials; Type: VIEW; Schema: NY; Owner: -
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| 72 |
12922
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aaronmk
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--
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13374
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aaronmk
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CREATE OR REPLACE VIEW _specimens_04_count_of_species_binomials AS
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13042
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aaronmk
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SELECT count(DISTINCT concat_ws(' '::text, "Ecatalog_all".genus, "Ecatalog_all"."specificEpithet")) AS species_binomials
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12922
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aaronmk
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FROM "Ecatalog_all"
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13107
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aaronmk
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WHERE (("Ecatalog_all".genus IS NOT NULL) AND ("Ecatalog_all"."specificEpithet" IS NOT NULL));
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12922
|
aaronmk
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| 79 |
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| 80 |
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--
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| 81 |
13041
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aaronmk
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-- Name: VIEW _specimens_04_count_of_species_binomials; Type: COMMENT; Schema: NY; Owner: -
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| 82 |
12922
|
aaronmk
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--
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| 83 |
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| 84 |
13041
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aaronmk
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COMMENT ON VIEW _specimens_04_count_of_species_binomials IS '
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| 85 |
12922
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aaronmk
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Check: should return 1 row
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| 86 |
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';
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| 87 |
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| 88 |
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| 89 |
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--
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| 90 |
13041
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aaronmk
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-- Name: _specimens_05_list_of_species_binomials; Type: VIEW; Schema: NY; Owner: -
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| 91 |
12922
|
aaronmk
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--
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| 92 |
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| 93 |
13374
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aaronmk
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CREATE OR REPLACE VIEW _specimens_05_list_of_species_binomials AS
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| 94 |
13042
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aaronmk
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SELECT DISTINCT concat_ws(' '::text, "Ecatalog_all".genus, "Ecatalog_all"."specificEpithet") AS species_binomial
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| 95 |
12922
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aaronmk
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FROM "Ecatalog_all"
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| 96 |
13107
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aaronmk
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WHERE (("Ecatalog_all".genus IS NOT NULL) AND ("Ecatalog_all"."specificEpithet" IS NOT NULL));
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| 97 |
12922
|
aaronmk
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| 98 |
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| 99 |
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--
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| 100 |
13041
|
aaronmk
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-- Name: VIEW _specimens_05_list_of_species_binomials; Type: COMMENT; Schema: NY; Owner: -
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| 101 |
12922
|
aaronmk
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--
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| 102 |
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| 103 |
13041
|
aaronmk
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COMMENT ON VIEW _specimens_05_list_of_species_binomials IS '
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| 104 |
12922
|
aaronmk
|
Check: should return 3335 rows
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| 105 |
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';
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| 106 |
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| 107 |
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| 108 |
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--
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| 109 |
13037
|
aaronmk
|
-- Name: _specimens_06_count_of_unique_verb_subsp_taxa_with_author; Type: VIEW; Schema: NY; Owner: -
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| 110 |
12922
|
aaronmk
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--
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| 111 |
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| 112 |
13374
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aaronmk
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CREATE OR REPLACE VIEW _specimens_06_count_of_unique_verb_subsp_taxa_with_author AS
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| 113 |
13112
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aaronmk
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SELECT count(DISTINCT "Ecatalog_all"."scientificName") AS taxon_names_with_author
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| 114 |
12922
|
aaronmk
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FROM "Ecatalog_all"
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| 115 |
13110
|
aaronmk
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WHERE ((("Ecatalog_all".genus IS NOT NULL) AND ("Ecatalog_all"."specificEpithet" IS NOT NULL)) AND ("Ecatalog_all".subspecies IS NOT NULL));
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| 116 |
12922
|
aaronmk
|
|
| 117 |
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| 118 |
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--
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| 119 |
13037
|
aaronmk
|
-- Name: VIEW _specimens_06_count_of_unique_verb_subsp_taxa_with_author; Type: COMMENT; Schema: NY; Owner: -
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| 120 |
12922
|
aaronmk
|
--
|
| 121 |
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| 122 |
13037
|
aaronmk
|
COMMENT ON VIEW _specimens_06_count_of_unique_verb_subsp_taxa_with_author IS '
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| 123 |
12922
|
aaronmk
|
Check: should return 1 row
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| 124 |
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';
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| 125 |
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| 126 |
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| 127 |
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--
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| 128 |
13037
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aaronmk
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-- Name: _specimens_07_list_of_verbatim_subspecific_taxa_with_author; Type: VIEW; Schema: NY; Owner: -
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| 129 |
12922
|
aaronmk
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--
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| 130 |
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| 131 |
13374
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aaronmk
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CREATE OR REPLACE VIEW _specimens_07_list_of_verbatim_subspecific_taxa_with_author AS
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| 132 |
13112
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aaronmk
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SELECT DISTINCT "Ecatalog_all"."scientificName" AS taxon_name_with_author
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| 133 |
12922
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aaronmk
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FROM "Ecatalog_all"
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| 134 |
13152
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aaronmk
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WHERE ("Ecatalog_all".subspecies IS NOT NULL);
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| 135 |
12922
|
aaronmk
|
|
| 136 |
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| 137 |
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--
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| 138 |
13037
|
aaronmk
|
-- Name: VIEW _specimens_07_list_of_verbatim_subspecific_taxa_with_author; Type: COMMENT; Schema: NY; Owner: -
|
| 139 |
12922
|
aaronmk
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--
|
| 140 |
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| 141 |
13037
|
aaronmk
|
COMMENT ON VIEW _specimens_07_list_of_verbatim_subspecific_taxa_with_author IS '
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| 142 |
12922
|
aaronmk
|
Check: should return 40145 rows
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| 143 |
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';
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| 144 |
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| 145 |
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| 146 |
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--
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| 147 |
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-- Name: _specimens_08_count_of_unique_verbatim_author_taxa_with_genus; Type: VIEW; Schema: NY; Owner: -
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| 148 |
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--
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| 149 |
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| 150 |
13374
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aaronmk
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CREATE OR REPLACE VIEW _specimens_08_count_of_unique_verbatim_author_taxa_with_genus AS
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| 151 |
13123
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aaronmk
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SELECT count(DISTINCT "Ecatalog_all"."scientificName") AS taxon_names_with_author
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| 152 |
12922
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aaronmk
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FROM "Ecatalog_all"
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| 153 |
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WHERE ("Ecatalog_all".genus IS NOT NULL);
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| 154 |
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| 155 |
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| 156 |
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--
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| 157 |
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-- Name: VIEW _specimens_08_count_of_unique_verbatim_author_taxa_with_genus; Type: COMMENT; Schema: NY; Owner: -
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| 158 |
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--
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| 159 |
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| 160 |
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COMMENT ON VIEW _specimens_08_count_of_unique_verbatim_author_taxa_with_genus IS '
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| 161 |
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Check: should return 1 row
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| 162 |
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';
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| 163 |
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| 164 |
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| 165 |
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--
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| 166 |
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-- Name: _specimens_09_list_of_unique_verbatim_author_taxa_with_genus; Type: VIEW; Schema: NY; Owner: -
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| 167 |
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--
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| 168 |
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| 169 |
13374
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aaronmk
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CREATE OR REPLACE VIEW _specimens_09_list_of_unique_verbatim_author_taxa_with_genus AS
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| 170 |
13123
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aaronmk
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SELECT DISTINCT "Ecatalog_all"."scientificName" AS taxon_name_with_author
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| 171 |
12922
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aaronmk
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FROM "Ecatalog_all"
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| 172 |
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WHERE ("Ecatalog_all".genus IS NOT NULL);
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| 173 |
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| 174 |
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| 175 |
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--
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| 176 |
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-- Name: VIEW _specimens_09_list_of_unique_verbatim_author_taxa_with_genus; Type: COMMENT; Schema: NY; Owner: -
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| 177 |
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--
|
| 178 |
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| 179 |
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COMMENT ON VIEW _specimens_09_list_of_unique_verbatim_author_taxa_with_genus IS '
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| 180 |
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Check: should return 45997 rows
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| 181 |
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';
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| 182 |
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| 183 |
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| 184 |
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--
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| 185 |
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-- Name: _specimens_10_count_number_of_records_by_institution; Type: VIEW; Schema: NY; Owner: -
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| 186 |
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--
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| 187 |
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| 188 |
13374
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aaronmk
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CREATE OR REPLACE VIEW _specimens_10_count_number_of_records_by_institution AS
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| 189 |
12922
|
aaronmk
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SELECT "Ecatalog_all".specimen_duplicate_institutions,
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| 190 |
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count(*) AS records
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| 191 |
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FROM "Ecatalog_all"
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| 192 |
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GROUP BY "Ecatalog_all".specimen_duplicate_institutions;
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| 193 |
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| 194 |
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| 195 |
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--
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| 196 |
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-- Name: VIEW _specimens_10_count_number_of_records_by_institution; Type: COMMENT; Schema: NY; Owner: -
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| 197 |
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--
|
| 198 |
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| 199 |
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COMMENT ON VIEW _specimens_10_count_number_of_records_by_institution IS '
|
| 200 |
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Note: Majority should be from ''NY''; these are standard herbarium acronyms
|
| 201 |
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| 202 |
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Check: should return 6 rows
|
| 203 |
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';
|
| 204 |
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| 205 |
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| 206 |
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--
|
| 207 |
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-- Name: _specimens_11_list_of_three_standard_political_divisions; Type: VIEW; Schema: NY; Owner: -
|
| 208 |
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--
|
| 209 |
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| 210 |
13374
|
aaronmk
|
CREATE OR REPLACE VIEW _specimens_11_list_of_three_standard_political_divisions AS
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| 211 |
12922
|
aaronmk
|
SELECT DISTINCT "Ecatalog_all".country,
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| 212 |
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"Ecatalog_all"."stateProvince",
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| 213 |
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"Ecatalog_all".county
|
| 214 |
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FROM "Ecatalog_all";
|
| 215 |
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| 216 |
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| 217 |
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--
|
| 218 |
|
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-- Name: VIEW _specimens_11_list_of_three_standard_political_divisions; Type: COMMENT; Schema: NY; Owner: -
|
| 219 |
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--
|
| 220 |
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|
| 221 |
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COMMENT ON VIEW _specimens_11_list_of_three_standard_political_divisions IS '
|
| 222 |
|
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Note: character set issues may cause mis-matches. This query is a good way to reveal character set issues, either in source db or in BIEN
|
| 223 |
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|
| 224 |
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Check: should return 5232 rows
|
| 225 |
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';
|
| 226 |
|
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|
| 227 |
|
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|
| 228 |
|
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--
|
| 229 |
|
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-- Name: _specimens_12_distinct_collector_name_collect_num_date_w_count; Type: VIEW; Schema: NY; Owner: -
|
| 230 |
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--
|
| 231 |
|
|
|
| 232 |
13374
|
aaronmk
|
CREATE OR REPLACE VIEW _specimens_12_distinct_collector_name_collect_num_date_w_count AS
|
| 233 |
12922
|
aaronmk
|
SELECT ifnull("Ecatalog_all"."recordedBy", ''::text) AS "collectorName",
|
| 234 |
|
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ifnull("Ecatalog_all"."collectorNumber", ''::text) AS "collectionNumber",
|
| 235 |
13087
|
aaronmk
|
concat_ws('-'::text, "Ecatalog_all"."yearCollected", "Ecatalog_all"."monthCollected", "Ecatalog_all"."dayCollected") AS "dateCollected",
|
| 236 |
12922
|
aaronmk
|
count(*) AS "specimenRecords"
|
| 237 |
|
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FROM "Ecatalog_all"
|
| 238 |
|
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GROUP BY "Ecatalog_all"."recordedBy", "Ecatalog_all"."collectorNumber", concat_ws('-'::text, "Ecatalog_all"."yearCollected", "Ecatalog_all"."monthCollected", "Ecatalog_all"."dayCollected")
|
| 239 |
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ORDER BY "Ecatalog_all"."recordedBy", "Ecatalog_all"."collectorNumber", concat_ws('-'::text, "Ecatalog_all"."yearCollected", "Ecatalog_all"."monthCollected", "Ecatalog_all"."dayCollected");
|
| 240 |
|
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|
| 241 |
|
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|
| 242 |
|
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--
|
| 243 |
|
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-- Name: VIEW _specimens_12_distinct_collector_name_collect_num_date_w_count; Type: COMMENT; Schema: NY; Owner: -
|
| 244 |
|
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--
|
| 245 |
|
|
|
| 246 |
|
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COMMENT ON VIEW _specimens_12_distinct_collector_name_collect_num_date_w_count IS '
|
| 247 |
|
|
Check: should return 309396 rows
|
| 248 |
|
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';
|
| 249 |
|
|
|
| 250 |
|
|
|
| 251 |
|
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--
|
| 252 |
|
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-- Name: _specimens_13_count_of_all_verbatim_and_decimal_lat_long; Type: VIEW; Schema: NY; Owner: -
|
| 253 |
|
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--
|
| 254 |
|
|
|
| 255 |
13374
|
aaronmk
|
CREATE OR REPLACE VIEW _specimens_13_count_of_all_verbatim_and_decimal_lat_long AS
|
| 256 |
13130
|
aaronmk
|
SELECT ( SELECT count(DISTINCT ROW("Ecatalog_all"."decimalLatitude", "Ecatalog_all"."decimalLongitude")) AS count
|
| 257 |
12922
|
aaronmk
|
FROM "Ecatalog_all"
|
| 258 |
13147
|
aaronmk
|
WHERE (("Ecatalog_all"."decimalLatitude" IS NOT NULL) OR ("Ecatalog_all"."decimalLongitude" IS NOT NULL))) AS "allLatLongs",
|
| 259 |
13130
|
aaronmk
|
( SELECT count(DISTINCT ROW("Ecatalog_all"."decimalLatitude", "Ecatalog_all"."decimalLongitude")) AS count
|
| 260 |
12922
|
aaronmk
|
FROM "Ecatalog_all"
|
| 261 |
13143
|
aaronmk
|
WHERE (is_castable("Ecatalog_all"."decimalLatitude", NULL::double precision) AND is_castable("Ecatalog_all"."decimalLongitude", NULL::double precision))) AS "decimalLatLongs";
|
| 262 |
12922
|
aaronmk
|
|
| 263 |
|
|
|
| 264 |
|
|
--
|
| 265 |
|
|
-- Name: VIEW _specimens_13_count_of_all_verbatim_and_decimal_lat_long; Type: COMMENT; Schema: NY; Owner: -
|
| 266 |
|
|
--
|
| 267 |
|
|
|
| 268 |
|
|
COMMENT ON VIEW _specimens_13_count_of_all_verbatim_and_decimal_lat_long IS '
|
| 269 |
|
|
Check: should return 1 row
|
| 270 |
|
|
';
|
| 271 |
|
|
|
| 272 |
|
|
|
| 273 |
|
|
--
|
| 274 |
13144
|
aaronmk
|
-- Name: _specimens_13a_list_of_all_verbatim_lat_long; Type: VIEW; Schema: NY; Owner: -
|
| 275 |
|
|
--
|
| 276 |
|
|
|
| 277 |
13374
|
aaronmk
|
CREATE OR REPLACE VIEW _specimens_13a_list_of_all_verbatim_lat_long AS
|
| 278 |
13145
|
aaronmk
|
SELECT DISTINCT "Ecatalog_all"."decimalLatitude" AS "verbatimLatitude",
|
| 279 |
|
|
"Ecatalog_all"."decimalLongitude" AS "verbatimLongitude"
|
| 280 |
13144
|
aaronmk
|
FROM "Ecatalog_all"
|
| 281 |
13147
|
aaronmk
|
WHERE (("Ecatalog_all"."decimalLatitude" IS NOT NULL) OR ("Ecatalog_all"."decimalLongitude" IS NOT NULL));
|
| 282 |
13144
|
aaronmk
|
|
| 283 |
|
|
|
| 284 |
|
|
--
|
| 285 |
|
|
-- Name: _specimens_13b_list_of_all_decimal_lat_long; Type: VIEW; Schema: NY; Owner: -
|
| 286 |
|
|
--
|
| 287 |
|
|
|
| 288 |
13374
|
aaronmk
|
CREATE OR REPLACE VIEW _specimens_13b_list_of_all_decimal_lat_long AS
|
| 289 |
13146
|
aaronmk
|
SELECT DISTINCT ("Ecatalog_all"."decimalLatitude")::double precision AS "decimalLatitude",
|
| 290 |
|
|
("Ecatalog_all"."decimalLongitude")::double precision AS "decimalLongitude"
|
| 291 |
13144
|
aaronmk
|
FROM "Ecatalog_all"
|
| 292 |
|
|
WHERE (is_castable("Ecatalog_all"."decimalLatitude", NULL::double precision) AND is_castable("Ecatalog_all"."decimalLongitude", NULL::double precision));
|
| 293 |
|
|
|
| 294 |
|
|
|
| 295 |
|
|
--
|
| 296 |
12922
|
aaronmk
|
-- Name: _specimens_14_count_of_all_invalid_verbatim_lat_long; Type: VIEW; Schema: NY; Owner: -
|
| 297 |
|
|
--
|
| 298 |
|
|
|
| 299 |
13374
|
aaronmk
|
CREATE OR REPLACE VIEW _specimens_14_count_of_all_invalid_verbatim_lat_long AS
|
| 300 |
12922
|
aaronmk
|
SELECT ( SELECT count(*) AS count
|
| 301 |
|
|
FROM "Ecatalog_all"
|
| 302 |
|
|
WHERE ((("Ecatalog_all"."decimalLatitude")::double precision > (90)::double precision) OR (("Ecatalog_all"."decimalLatitude")::double precision < ((-90))::double precision))) AS "badLats",
|
| 303 |
|
|
( SELECT count(*) AS count
|
| 304 |
|
|
FROM "Ecatalog_all"
|
| 305 |
|
|
WHERE ((("Ecatalog_all"."decimalLongitude")::double precision > (180)::double precision) OR (("Ecatalog_all"."decimalLongitude")::double precision < ((-180))::double precision))) AS "badLongs";
|
| 306 |
|
|
|
| 307 |
|
|
|
| 308 |
|
|
--
|
| 309 |
|
|
-- Name: VIEW _specimens_14_count_of_all_invalid_verbatim_lat_long; Type: COMMENT; Schema: NY; Owner: -
|
| 310 |
|
|
--
|
| 311 |
|
|
|
| 312 |
|
|
COMMENT ON VIEW _specimens_14_count_of_all_invalid_verbatim_lat_long IS '
|
| 313 |
|
|
Check: should return 1 row
|
| 314 |
|
|
';
|
| 315 |
|
|
|
| 316 |
|
|
|
| 317 |
|
|
--
|
| 318 |
|
|
-- Name: _specimens_15_list_distinct_locality_descriptions; Type: VIEW; Schema: NY; Owner: -
|
| 319 |
|
|
--
|
| 320 |
|
|
|
| 321 |
13374
|
aaronmk
|
CREATE OR REPLACE VIEW _specimens_15_list_distinct_locality_descriptions AS
|
| 322 |
13150
|
aaronmk
|
SELECT DISTINCT "Ecatalog_all".locality AS "localityDescription"
|
| 323 |
12922
|
aaronmk
|
FROM "Ecatalog_all"
|
| 324 |
13150
|
aaronmk
|
WHERE ("Ecatalog_all".locality IS NOT NULL);
|
| 325 |
12922
|
aaronmk
|
|
| 326 |
|
|
|
| 327 |
|
|
--
|
| 328 |
|
|
-- Name: VIEW _specimens_15_list_distinct_locality_descriptions; Type: COMMENT; Schema: NY; Owner: -
|
| 329 |
|
|
--
|
| 330 |
|
|
|
| 331 |
|
|
COMMENT ON VIEW _specimens_15_list_distinct_locality_descriptions IS '
|
| 332 |
|
|
Check: should return 125592 records
|
| 333 |
|
|
';
|
| 334 |
|
|
|
| 335 |
|
|
|
| 336 |
|
|
--
|
| 337 |
|
|
-- Name: _specimens_16_list_distinct_specimen_descriptions; Type: VIEW; Schema: NY; Owner: -
|
| 338 |
|
|
--
|
| 339 |
|
|
|
| 340 |
13374
|
aaronmk
|
CREATE OR REPLACE VIEW _specimens_16_list_distinct_specimen_descriptions AS
|
| 341 |
13095
|
aaronmk
|
SELECT DISTINCT "Ecatalog_all"."specimenDescription"
|
| 342 |
12922
|
aaronmk
|
FROM "Ecatalog_all"
|
| 343 |
|
|
WHERE ("Ecatalog_all"."specimenDescription" IS NOT NULL);
|
| 344 |
|
|
|
| 345 |
|
|
|
| 346 |
|
|
--
|
| 347 |
|
|
-- Name: VIEW _specimens_16_list_distinct_specimen_descriptions; Type: COMMENT; Schema: NY; Owner: -
|
| 348 |
|
|
--
|
| 349 |
|
|
|
| 350 |
|
|
COMMENT ON VIEW _specimens_16_list_distinct_specimen_descriptions IS '
|
| 351 |
|
|
Note: specimens descriptions in nybg extract is in column "specimenDescription"
|
| 352 |
|
|
|
| 353 |
|
|
Check: should return 158460 records
|
| 354 |
|
|
';
|
| 355 |
|
|
|
| 356 |
|
|
|
| 357 |
|
|
--
|
| 358 |
|
|
-- PostgreSQL database dump complete
|
| 359 |
|
|
--
|
