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Name Size Revision Age Author Comment
  Source 11396 over 10 years Aaron Marcuse-Kubitza fix: bin/map: put template: comment out the "Pu...
  Taxon 13113 about 10 years Aaron Marcuse-Kubitza fix: inputs/test_taxonomic_names/Taxon/map.csv:...
  _scrub 13591 about 10 years Aaron Marcuse-Kubitza lib/tnrs.py: switched to downloading all matche...
  logs 10169 almost 11 years Aaron Marcuse-Kubitza inputs/*/logs: updated svn:ignore
  verify 13401 about 10 years Aaron Marcuse-Kubitza inputs/input.Makefile: add: verify/: also svn:i...
Makefile 27 Bytes 10177 almost 11 years Aaron Marcuse-Kubitza inputs/*/: added top-level Makefile which inclu...
README.TXT 1.13 KB 5217 over 11 years Aaron Marcuse-Kubitza Added inputs/test_taxonomic_names/README.TXT wi...
import_order.txt 13 Bytes 10109 almost 11 years Aaron Marcuse-Kubitza empty inputs/*/import_order.txt: added subdirs ...
run 87 Bytes 10260 almost 11 years Aaron Marcuse-Kubitza inputs/*/ which do not contain any explicit col...
table.run 81 Bytes 10179 almost 11 years Aaron Marcuse-Kubitza inputs/*/: added table.run for use by the table...
test_scrub 937 Bytes 10788 almost 11 years Aaron Marcuse-Kubitza inputs/test_taxonomic_names/test_scrub: added s...
  • svn:ignore: *

Latest revisions

# Date Author Comment
13591 06/02/2014 04:50 AM Aaron Marcuse-Kubitza

lib/tnrs.py: switched to downloading all matches per name, as is needed to implement #917. note that this will break the parts of the schema that use the tnrs table, until Brad's match-picking algorithm can be implemented, but this tradeoff is necessary to be able to begin scrubbing sooner (Martha; wiki.vegpath.org/2014-05-29_conference_call#TNRS)

13590 06/02/2014 04:35 AM Aaron Marcuse-Kubitza

schemas/vegbien.sql: tnrs_input_name: don't scrub accepted names, as using multiple matches per name no longer provides a single accepted name to scrub. instead, the Accepted_* fields can be whitespace-split to generate the same columns that would have been generated by the scrubbing (and without the overhead of the extra TNRS call).

13579 05/31/2014 10:28 PM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: tnrs: populate match_num

13574 05/31/2014 08:11 PM Aaron Marcuse-Kubitza

inputs/test_taxonomic_names/_scrub/*: updated to TNRS schema

13401 05/03/2014 02:03 PM Aaron Marcuse-Kubitza

inputs/input.Makefile: add: verify/: also svn:ignore *.log

13113 04/10/2014 01:25 PM Aaron Marcuse-Kubitza

fix: inputs/test_taxonomic_names/Taxon/map.csv: scientificName: remapped to scientificName instead of taxonName as this does include the author for some names

12968 03/29/2014 04:06 AM Aaron Marcuse-Kubitza

*{.sh,run}: runscript targets: use begin_target instead of echo_func so the target name is properly echoed. note that this requires using with_rm so that $rm is properly progagated to applicable invoked targets. (previously, $rm was progagated to all invoked targets. note that with_rm only works inside a runscript target that starts with begin_target.)

12018 02/02/2014 12:49 AM Aaron Marcuse-Kubitza

inputs/input.Makefile: add!: verify/: also svn:ignore *.tsv, *.txt

11970 01/20/2014 11:33 AM Aaron Marcuse-Kubitza

moved everything into /trunk/ to create the standard svn layout, for use with tools that require this (eg. git-svn). IMPORTANT: do NOT do an `svn up`. instead, re-use your working copy's existing files with `svn switch` (http://svnbook.red-bean.com/en/1.6/svn.ref.svn.c.switch.html).

11396 10/21/2013 07:14 PM Aaron Marcuse-Kubitza

fix: bin/map: put template: comment out the "Put template:" label so that the output is valid XML, and displays properly in a browser rather than showing a syntax error

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