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root/trunk @ 13638

Name Size Revision Age Author Comment
  BIEN2 12779 over 10 years Aaron Marcuse-Kubitza *{.sh,run}: use new begin_target instead of `ec...
  _archive 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
  _license 13400 over 10 years Aaron Marcuse-Kubitza added validation/aggregating/plots/VegBank/bien...
  backups 13592 over 10 years Aaron Marcuse-Kubitza backups/TNRS.backup.md5: updated
  bin 13309 over 10 years Aaron Marcuse-Kubitza bin/in_place: diff: use --brief to avoid scanni...
  config 13553 over 10 years Aaron Marcuse-Kubitza removed no longer used config/VirtualBox_VMs/Ve...
  derived 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
  downloads 13537 over 10 years Aaron Marcuse-Kubitza added downloads/
  exports 13568 over 10 years Aaron Marcuse-Kubitza exports/2014-3-11.Jeff_Ott.climatic_range_deter...
  inputs 13632 over 10 years Aaron Marcuse-Kubitza inputs/.TNRS/schema.sql: added taxon_name_is_sa...
  issues 12124 almost 11 years Aaron Marcuse-Kubitza **/LICENSE.TXT: corrected "it recommended" to "...
  lib 13636 over 10 years Aaron Marcuse-Kubitza lib/tnrs.py: max_names: raised back up to 500 n...
  mappings 13115 over 10 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: mapped subspecies...
  planning 13513 over 10 years Aaron Marcuse-Kubitza planning/meetings/BIEN conference call availabi...
  schemas 13638 over 10 years Aaron Marcuse-Kubitza fix: schemas/util.sql: pg_get_viewdef(): should...
  validation 13434 over 10 years Aaron Marcuse-Kubitza validation/aggregating/plots/bien3_validations_...
  web 13629 over 10 years Aaron Marcuse-Kubitza web/.htaccess: auto-detect dotpath in query str...
  wiki 12124 almost 11 years Aaron Marcuse-Kubitza **/LICENSE.TXT: corrected "it recommended" to "...
.htaccess 326 Bytes 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
.rsync_filter.upload 33 Bytes 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
.rsync_ignore 12 Bytes 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
LICENSE.TXT 6.18 KB 12124 almost 11 years Aaron Marcuse-Kubitza **/LICENSE.TXT: corrected "it recommended" to "...
Makefile 13.3 KB 13419 over 10 years Aaron Marcuse-Kubitza bugfix: /Makefile: install: use schemas/public/...
README.TXT 33.8 KB 13594 over 10 years Aaron Marcuse-Kubitza bugfix: /README.TXT: Full database import: To r...
fix_perms 97 Bytes 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
map 1001 Bytes 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
new_terms.csv 80.2 KB 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
run 518 Bytes 12968 over 10 years Aaron Marcuse-Kubitza *{.sh,run}: runscript targets: use begin_target...
unmapped_terms.csv 33 KB 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
  • svn:ignore: extern

Latest revisions

# Date Author Comment
13638 06/05/2014 05:46 AM Aaron Marcuse-Kubitza

fix: schemas/util.sql: pg_get_viewdef(): should be STABLE because it references system catalogs
13637 06/05/2014 05:44 AM Aaron Marcuse-Kubitza

schemas/util.sql: added pg_get_viewdef() wrapper, which unexpands expanded * expressions
13636 06/05/2014 04:30 AM Aaron Marcuse-Kubitza

lib/tnrs.py: max_names: raised back up to 500 now that a workaround for the Internal Server Errors is in place (https://github.com/iPlantCollaborativeOpenSource/TNRS/issues/7)
13635 06/05/2014 03:57 AM Aaron Marcuse-Kubitza

fix: schemas/public_.sql: tnrs_input_name: added ORDER BY to ensure a stable sort order. this also creates better query plans by enabling merge joins.
13634 06/05/2014 03:50 AM Aaron Marcuse-Kubitza

bugfix: schemas/public_.sql: tnrs_input_name: need to exclude unsafe taxon names as a workaround to #935 (TNRS crashes when scrubbing names with two infraspecific epithets)
13633 06/05/2014 03:45 AM Aaron Marcuse-Kubitza

schemas/public_.sql: taxonlabel: added index on taxonomicname to facilitate retrieving rows from tnrs_input_name
13632 06/05/2014 03:39 AM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: added taxon_name_is_safe()
13631 06/05/2014 03:30 AM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: added unsafe_taxon_names()
13630 06/04/2014 03:01 PM Aaron Marcuse-Kubitza

fix: lib/tnrs.py: max_names: lowered to 50 because the dev TNRS server is now always crashing with an Internal Server Error when scrubbing 500 names at a time (https://github.com/iPlantCollaborativeOpenSource/TNRS/issues/7)
13629 06/04/2014 11:41 AM Aaron Marcuse-Kubitza

web/.htaccess: auto-detect dotpath in query string: also auto-prepend & for query strings appended to a username-based prefix, so that these don't need to have & manually prepended to make them appendable

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