| 1 |
7876
|
aaronmk
|
<?php
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| 2 |
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require_once dirname(__FILE__)."/util.php";
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| 3 |
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| 4 |
7956
|
aaronmk
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$self_dir = ensure_suffix("/", dirname($_SERVER["SCRIPT_NAME"]));
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| 6 |
13714
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aaronmk
|
function to_dir($path) { return dirname($path.'_'/*in case no filename*/); }
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| 8 |
7904
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aaronmk
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$h_level = 5;
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9601
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aaronmk
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$root = $_SERVER["SERVER_NAME"].rm_suffix("/", $self_dir)."?";
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7876
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aaronmk
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| 11 |
13780
|
aaronmk
|
function add_ns($name, $path_pat)
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7876
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aaronmk
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{
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13780
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aaronmk
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global $root, $h_level, $path;
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| 14 |
7876
|
aaronmk
|
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| 15 |
7967
|
aaronmk
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print("<h".$h_level.' id="'.$name.'">'.$root.'<big><a href="http://'.$root
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| 16 |
7938
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aaronmk
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.$name.'">'.$name."</a></big><i>".$path_pat."</i></h".$h_level.">\n");
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7876
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aaronmk
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}
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7937
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aaronmk
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function custom_separator($url, $sep, $main_url=null)
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7910
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aaronmk
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{
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7914
|
aaronmk
|
if (!isset($main_url)) $main_url = $url;
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return function($path) use($url, $sep, $main_url)
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7910
|
aaronmk
|
{
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| 25 |
7914
|
aaronmk
|
if ($path === "") return $main_url;
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7910
|
aaronmk
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$path = parse_dot_path($path);
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return $url.join_non_empty($sep, array($path->head, $path->tail));
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};
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}
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| 31 |
7876
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aaronmk
|
function fragment_override($url, $fragment=null)
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{
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return function($path) use($url, $fragment)
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{
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if (!isset($fragment))
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{
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$path = parse_dot_path($path);
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$fragment = $path->head;
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$path = $path->tail;
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}
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7902
|
aaronmk
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if ($path !== "") $url .= "?".$path;
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| 42 |
7876
|
aaronmk
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return $url."#".$fragment;
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};
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}
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| 46 |
7934
|
aaronmk
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function phpPgAdmin($url, $table=null)
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| 47 |
7876
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aaronmk
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{
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7934
|
aaronmk
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return function($path) use($url, $table)
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| 49 |
7876
|
aaronmk
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{
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| 50 |
7934
|
aaronmk
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$path = join_non_empty(".", array($table, $path));
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| 51 |
7876
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aaronmk
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$path = parse_dot_path($path);
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| 52 |
7886
|
aaronmk
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$subject = "schema";
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| 53 |
7902
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aaronmk
|
if ($path->head !== "")
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| 54 |
7876
|
aaronmk
|
{
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$url .= "&table=".$path->head;
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| 56 |
7902
|
aaronmk
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if ($path->tail !== "")
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7886
|
aaronmk
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{
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$url .= "&column=".$path->tail;
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$subject = "column";
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}
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else $subject = "table";
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| 62 |
7876
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aaronmk
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}
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| 63 |
7895
|
aaronmk
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$url .= "&subject=".$subject;
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return $url;
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7876
|
aaronmk
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};
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}
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7934
|
aaronmk
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function phpMyAdmin($url, $table=null)
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| 69 |
7893
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aaronmk
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{
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| 70 |
7934
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aaronmk
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return function($path) use($url, $table)
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| 71 |
7893
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aaronmk
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{
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| 72 |
7934
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aaronmk
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$path = join_non_empty(".", array($table, $path));
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7893
|
aaronmk
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$path = parse_dot_path($path);
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$target = "db_structure";
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7902
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aaronmk
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if ($path->head !== "")
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| 76 |
7893
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aaronmk
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{
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$url .= "&table=".$path->head;
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7902
|
aaronmk
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if ($path->tail !== "") $url .= "&column=".$path->tail;
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7899
|
aaronmk
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$target = "tbl_structure";
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| 80 |
7893
|
aaronmk
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}
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| 81 |
7896
|
aaronmk
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$url .= "&target=".$target.".php";
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7895
|
aaronmk
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return $url;
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7893
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aaronmk
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};
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}
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| 86 |
7876
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aaronmk
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ob_start(); // delay output in case there is a redirect
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?>
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| 88 |
9613
|
aaronmk
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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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<html xmlns="http://www.w3.org/1999/xhtml">
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| 90 |
7876
|
aaronmk
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<head>
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7881
|
aaronmk
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<title>VegPath</title>
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| 92 |
8033
|
aaronmk
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<link rel="stylesheet" type="text/css" href="/main.css" />
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| 93 |
7876
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aaronmk
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<style type="text/css">
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h1 {color: green;}
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</style>
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| 96 |
8033
|
aaronmk
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<script type="text/javascript" src="/util.js"></script>
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| 97 |
7876
|
aaronmk
|
</head>
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<body>
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| 99 |
7951
|
aaronmk
|
<h1>VegPath <small><a href="http://en.wikipedia.org/wiki/PURL">persistent URLs</a> for vegetation resources</small></h1>
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| 100 |
7923
|
aaronmk
|
<div>Supported URL patterns: <small>(elements in <i>italics</i> are optional)</small></div>
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| 101 |
7876
|
aaronmk
|
<?php
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# add and list URLs
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| 103 |
7920
|
aaronmk
|
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| 104 |
7924
|
aaronmk
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$Redmine = "https://projects.nceas.ucsb.edu/nceas/projects/bien";
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| 105 |
7928
|
aaronmk
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$Redmine_svn = $Redmine."/repository/raw";
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| 106 |
7924
|
aaronmk
|
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| 107 |
7920
|
aaronmk
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$nimoy = "http://nimoy.nceas.ucsb.edu/phpmyadmin/index.php";
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| 108 |
7921
|
aaronmk
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function nimoy_db($db) { global $nimoy; return phpMyAdmin($nimoy."?db=".$db); }
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| 109 |
7936
|
aaronmk
|
|
| 110 |
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$IH_db = phpMyAdmin($nimoy."?db=bien3_adb", "ih");
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| 111 |
7944
|
aaronmk
|
|
| 112 |
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$SALVIAS = "http://salvias.net/Documents/salvias_data_dictionary.html";
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| 113 |
7931
|
aaronmk
|
?>
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| 114 |
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<table border="0" cellspacing="0" cellpadding="0">
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| 115 |
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<tr valign="top">
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| 116 |
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<td nowrap="nowrap"><h2>Terms</h2></td>
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| 117 |
8044
|
aaronmk
|
<td nowrap="nowrap"><h2> </h2></td>
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| 118 |
7931
|
aaronmk
|
<td nowrap="nowrap"><h2>Data</h2></td>
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| 119 |
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</tr>
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| 120 |
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<tr valign="top">
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| 121 |
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<td nowrap="nowrap">
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| 122 |
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<?php
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| 123 |
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print("<blockquote>\n");
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| 124 |
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print("<h3>Exchange schemas</h3>");
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| 125 |
7876
|
aaronmk
|
{
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| 126 |
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print("<blockquote>\n");
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| 127 |
13780
|
aaronmk
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add_ns("VegCore", ".term");
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| 128 |
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add_ns("DwC", ".term");
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| 129 |
7876
|
aaronmk
|
{
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| 130 |
7931
|
aaronmk
|
print("<blockquote>\n"); $h_level++;
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| 131 |
13780
|
aaronmk
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add_ns("DwC.history", ".term");
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| 132 |
7931
|
aaronmk
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print("</blockquote>\n"); $h_level--;
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| 133 |
7876
|
aaronmk
|
}
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| 134 |
13780
|
aaronmk
|
add_ns("TCS", "#/XPath");
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| 135 |
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add_ns("VegX", "#/XPath");
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| 136 |
7931
|
aaronmk
|
print("</blockquote>\n");
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| 137 |
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}
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| 138 |
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print("<h3>Aggregators</h3>");
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| 139 |
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{
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| 140 |
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print("<blockquote>\n");
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| 141 |
13780
|
aaronmk
|
add_ns("TNRS", ".term");
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| 142 |
7939
|
aaronmk
|
add_ns("VegBank", ".table.column", custom_separator("http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&entity=dba_tabledescription&where=where_tablename&wparam=",
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| 143 |
7931
|
aaronmk
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"#", "http://vegbank.org/get/index/dba_tabledescription"));
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| 144 |
13780
|
aaronmk
|
add_ns("SALVIAS", ".table.column");
|
| 145 |
7876
|
aaronmk
|
{
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| 146 |
7931
|
aaronmk
|
print("<blockquote>\n"); $h_level++;
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| 147 |
13780
|
aaronmk
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add_ns("SALVIAS.db", ".table.column");
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| 148 |
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add_ns("SALVIAS.users", ".table.column");
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| 149 |
7931
|
aaronmk
|
print("</blockquote>\n"); $h_level--;
|
| 150 |
7876
|
aaronmk
|
}
|
| 151 |
13780
|
aaronmk
|
add_ns("VegBIEN", ".table.column");
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| 152 |
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add_ns("BIEN2", "");
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| 153 |
7876
|
aaronmk
|
{
|
| 154 |
7931
|
aaronmk
|
print("<blockquote>\n"); $h_level++;
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| 155 |
13780
|
aaronmk
|
add_ns("BIEN2.web", ".table.column");
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| 156 |
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add_ns("BIEN2.core", ".table.column");
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| 157 |
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add_ns("BIEN2.geoscrub", ".table.column");
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| 158 |
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add_ns("BIEN2.staging", ".table.column");
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| 159 |
7931
|
aaronmk
|
print("</blockquote>\n"); $h_level--;
|
| 160 |
7876
|
aaronmk
|
}
|
| 161 |
7931
|
aaronmk
|
print("</blockquote>\n");
|
| 162 |
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}
|
| 163 |
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print("<h3>Primary databases</h3>");
|
| 164 |
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{
|
| 165 |
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print("<blockquote>\n");
|
| 166 |
13780
|
aaronmk
|
add_ns("CTFS", "");
|
| 167 |
7929
|
aaronmk
|
{
|
| 168 |
7931
|
aaronmk
|
print("<blockquote>\n"); $h_level++;
|
| 169 |
13780
|
aaronmk
|
add_ns("CTFS.schema", ".table.column");
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| 170 |
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add_ns("CTFS.tables", ".table");
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| 171 |
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add_ns("CTFS.terms", ".term");
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| 172 |
7931
|
aaronmk
|
print("</blockquote>\n"); $h_level--;
|
| 173 |
7929
|
aaronmk
|
}
|
| 174 |
13780
|
aaronmk
|
add_ns("IH.db", ".term");
|
| 175 |
7876
|
aaronmk
|
print("</blockquote>\n");
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| 176 |
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}
|
| 177 |
7931
|
aaronmk
|
print("<h3>People</h3>");
|
| 178 |
7876
|
aaronmk
|
{
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| 179 |
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print("<blockquote>\n");
|
| 180 |
13780
|
aaronmk
|
add_ns("Brad", "");
|
| 181 |
7931
|
aaronmk
|
{
|
| 182 |
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print("<blockquote>\n"); $h_level++;
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| 183 |
13775
|
aaronmk
|
$Brad_Boyle_VegCore = $Redmine_svn."/exchange_schemas/VegCore/Brad_Boyle";
|
| 184 |
13780
|
aaronmk
|
add_ns("Brad.provenance", ".term");
|
| 185 |
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add_ns("Brad.identifiers", ".term");
|
| 186 |
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add_ns("Brad.identifier_examples", ".term");
|
| 187 |
7931
|
aaronmk
|
print("</blockquote>\n"); $h_level--;
|
| 188 |
|
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}
|
| 189 |
7876
|
aaronmk
|
print("</blockquote>\n");
|
| 190 |
|
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}
|
| 191 |
7931
|
aaronmk
|
print("</blockquote>\n");
|
| 192 |
|
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?>
|
| 193 |
|
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</td>
|
| 194 |
8044
|
aaronmk
|
<td nowrap="nowrap"></td>
|
| 195 |
7931
|
aaronmk
|
<td nowrap="nowrap">
|
| 196 |
|
|
<?php
|
| 197 |
|
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print("<blockquote>\n");
|
| 198 |
7932
|
aaronmk
|
print("<h3>Institutions</h3>");
|
| 199 |
|
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{
|
| 200 |
|
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print("<blockquote>\n");
|
| 201 |
7939
|
aaronmk
|
add_ns("IH", ".herbarium_code", by_prefix("http://sweetgum.nybg.org/ih/herbarium_list.php?QueryName=DetailedQuery&Restriction=NamPartyType+%3D+%27IH+Herbarium%27&col_NamOrganisationAcronym=",
|
| 202 |
7931
|
aaronmk
|
"http://sweetgum.nybg.org/ih/"));
|
| 203 |
7932
|
aaronmk
|
print("</blockquote>\n");
|
| 204 |
|
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}
|
| 205 |
7931
|
aaronmk
|
print("</blockquote>\n");
|
| 206 |
|
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?>
|
| 207 |
|
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</td>
|
| 208 |
|
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</tr>
|
| 209 |
|
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</table>
|
| 210 |
|
|
<?php
|
| 211 |
7967
|
aaronmk
|
if (ends_with($root, '#')) # URL shortener requires fragment redirect
|
| 212 |
7922
|
aaronmk
|
{
|
| 213 |
7876
|
aaronmk
|
?>
|
| 214 |
7931
|
aaronmk
|
<script type="text/javascript">
|
| 215 |
7876
|
aaronmk
|
var loc = document.location
|
| 216 |
8365
|
aaronmk
|
if (loc.hash) document.location = '?'+rm_prefix('#', loc.hash)
|
| 217 |
7931
|
aaronmk
|
</script>
|
| 218 |
7922
|
aaronmk
|
<?php
|
| 219 |
|
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}
|
| 220 |
9607
|
aaronmk
|
?>
|
| 221 |
|
|
<p> </p>
|
| 222 |
|
|
<?php
|
| 223 |
7876
|
aaronmk
|
ob_end_flush();
|
| 224 |
9605
|
aaronmk
|
|
| 225 |
|
|
# full directory index
|
| 226 |
13714
|
aaronmk
|
fpassthru(fopen(to_dir($_SERVER["SCRIPT_URI"])."/all", "r"));
|
| 227 |
9606
|
aaronmk
|
?>
|
| 228 |
|
|
</body>
|
| 229 |
|
|
</html>
|
