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root/trunk/lib @ 13838

Name Size Revision Age Author Comment
  MySQL_Workbench 8352 over 11 years Aaron Marcuse-Kubitza schemas/VegCore/VegCore.ERD.mwb legend images: ...
  runscripts 13821 over 10 years Aaron Marcuse-Kubitza fix: lib/runscripts/extract.run: export_(): exp...
  sh 13365 over 10 years Aaron Marcuse-Kubitza bugfix: lib/sh/db.sh: pg_dump(): need use_pg to...
Firefox_bookmarks.reformat.csv 3.05 KB 13257 over 10 years Aaron Marcuse-Kubitza lib/Firefox_bookmarks.reformat.csv: changed "pa...
MySQL.data.sql.make 97 Bytes 7689 over 11 years Aaron Marcuse-Kubitza lib/MySQL.*.sql.make: Added --user option to de...
MySQL.schema.sql.make 99 Bytes 7689 over 11 years Aaron Marcuse-Kubitza lib/MySQL.*.sql.make: Added --user option to de...
Parser.py 1.08 KB 11995 almost 11 years Aaron Marcuse-Kubitza fix: lib/Parser.py: syntax_err(): error message...
PostgreSQL-MySQL.csv 1.39 KB 13559 over 10 years Aaron Marcuse-Kubitza fix: lib/PostgreSQL-MySQL.csv: need to replace ...
Proxy.py 422 Bytes 1890 over 12 years Aaron Marcuse-Kubitza Proxy.py: Fixed infinite recursion bug by remov...
Runnable.py 619 Bytes 1867 over 12 years Aaron Marcuse-Kubitza Runnable.py: Made it picklable
angles.py 455 Bytes 1606 over 12 years Aaron Marcuse-Kubitza Added angles.py
collection.py 738 Bytes 1884 over 12 years Aaron Marcuse-Kubitza collection.py: rmap(): Treat only built-in sequ...
common.Makefile 4.24 KB 13019 over 10 years Aaron Marcuse-Kubitza fix: lib/common.Makefile: $(nice): use an incre...
csvs.py 7.42 KB 9961 over 11 years Aaron Marcuse-Kubitza lib/csvs.py: sniff(): support single-column spr...
dates.py 2.21 KB 1467 over 12 years Aaron Marcuse-Kubitza lib/*.py: Removed svn:executable property to tu...
db_xml.py 9.3 KB 10829 about 11 years Aaron Marcuse-Kubitza bugfix: lib/db_xml.py: put_table(): turned off ...
debug2redmine.csv 82 Bytes 3498 over 12 years Aaron Marcuse-Kubitza debug2redmine.csv: EXPLAIN comments: Fixed bug ...
dicts.py 3.09 KB 6412 almost 12 years Aaron Marcuse-Kubitza dicts.py: Added WrapDict, a dict that runs a fu...
eval_.py 321 Bytes 1866 over 12 years Aaron Marcuse-Kubitza Added eval_.py
exc.py 4.44 KB 6671 almost 12 years Aaron Marcuse-Kubitza exc.py: e_msg(): Emit a warning instead of an A...
format.py 1.07 KB 3815 over 12 years Aaron Marcuse-Kubitza format.py: Added str2int_passthru()
forwarding.Makefile 436 Bytes 6295 about 12 years Aaron Marcuse-Kubitza lib/forwarding.Makefile: $(subdirs): Also exclu...
http.py 553 Bytes 1696 over 12 years Aaron Marcuse-Kubitza Added http.py with httplib modifications to dea...
ints.py 113 Bytes 9454 over 11 years Aaron Marcuse-Kubitza added lib/ints.py with renamings of max()->set_...
iters.py 897 Bytes 2254 over 12 years Aaron Marcuse-Kubitza Compare object()-based sentinel values using is...
lists.py 726 Bytes 7007 almost 12 years Aaron Marcuse-Kubitza lists.py: Added and_(), or_()
mappings.Makefile 416 Bytes 6169 about 12 years Aaron Marcuse-Kubitza lib/mappings.Makefile: Checking if $(termsSubdi...
maps.py 2.78 KB 10255 over 11 years Aaron Marcuse-Kubitza bin/filter_out_ci, lib/maps.py: simplify(): als...
objects.py 557 Bytes 4492 about 12 years Aaron Marcuse-Kubitza Replaced repr() with strings.urepr() (or equiva...
opts.py 957 Bytes 1672 over 12 years Aaron Marcuse-Kubitza opts.py: get_env_var(): default defaults to None
parallelproc.py 4.93 KB 4492 about 12 years Aaron Marcuse-Kubitza Replaced repr() with strings.urepr() (or equiva...
phpPgAdmin.config.inc.php.diff 99 Bytes 6852 almost 12 years Aaron Marcuse-Kubitza lib/phpPgAdmin.config.inc.php.diff: Remove cont...
phpPgAdmin.login.php.diff 1.03 KB 12549 over 10 years Aaron Marcuse-Kubitza fix: lib/phpPgAdmin.login.php.diff: "For user p...
profiling.py 1.54 KB 9524 over 11 years Aaron Marcuse-Kubitza lib/profiling.py: Profiler: added add_subprofil...
rand.py 101 Bytes 1871 over 12 years Aaron Marcuse-Kubitza rand.py: rand_int() Fixed bug where newly-creat...
regexp.py 317 Bytes 5353 about 12 years Aaron Marcuse-Kubitza regexp.py: sub_nested(): Use new sub_recursive()
scalar.py 265 Bytes 7115 almost 12 years Aaron Marcuse-Kubitza scalar.py: Added is_nonnull_scalar()
sql.py 58.5 KB 13004 over 10 years Aaron Marcuse-Kubitza fix: lib/sql.py: flatten(): don't warn if can't...
sql_gen.py 36.2 KB 13079 over 10 years Aaron Marcuse-Kubitza lib/sql_gen.py: map_expr(): documented that unl...
sql_io.py 35 KB 13005 over 10 years Aaron Marcuse-Kubitza fix: lib/sql_io.py: put_table(): don't warn if ...
streams.py 5.38 KB 13463 over 10 years Aaron Marcuse-Kubitza lib/streams.py: added file_get_contents()
strings.py 7.15 KB 5814 about 12 years Aaron Marcuse-Kubitza strings.py: Added join()
term.py 364 Bytes 1629 over 12 years Aaron Marcuse-Kubitza term.py: Added clear_line. Corrected file comment.
timeouts.py 378 Bytes 1673 over 12 years Aaron Marcuse-Kubitza Renamed timeout.py to timeouts.py. Renamed time...
tnrs.py 9.62 KB 13833 over 10 years Aaron Marcuse-Kubitza lib/tnrs.py: source_sorting (Constrain by Sourc...
units.py 2.34 KB 7656 over 11 years Aaron Marcuse-Kubitza units.py: convert(): Support ranges
util.py 6.7 KB 13392 over 10 years Aaron Marcuse-Kubitza fix: lib/util.py: dict_subset(): raise an error...
xml_dom.py 12.1 KB 7397 almost 12 years Aaron Marcuse-Kubitza xml_dom.py: replace_with_text(): Added support ...
xml_func.py 12.2 KB 7707 over 11 years Aaron Marcuse-Kubitza xml_func.py: Removed no longer used _range(). U...
xml_parse.py 1.96 KB 1764 over 12 years Aaron Marcuse-Kubitza xml_parse.py: ConsecXmlInputStream: Removed rea...
xpath.py 12.4 KB 4492 about 12 years Aaron Marcuse-Kubitza Replaced repr() with strings.urepr() (or equiva...
xpath_func.py 997 Bytes 1482 over 12 years Aaron Marcuse-Kubitza xpath_func.py: process(): Fixed bug where XPath...
  • svn:ignore: *.pyc tnrs.url

Latest revisions

# Date Author Comment
13833 06/24/2014 03:27 PM Aaron Marcuse-Kubitza

lib/tnrs.py: source_sorting (Constrain by Source): documented the different behavior for this in each match mode (all-matches and best-match)
13821 06/19/2014 01:57 AM Aaron Marcuse-Kubitza

fix: lib/runscripts/extract.run: export_(): explicitly prevent files from becoming web-accessible, to protect against an incorrect umask in the calling process
13636 06/05/2014 04:30 AM Aaron Marcuse-Kubitza

lib/tnrs.py: max_names: raised back up to 500 now that a workaround for the Internal Server Errors is in place (https://github.com/iPlantCollaborativeOpenSource/TNRS/issues/7)
13630 06/04/2014 03:01 PM Aaron Marcuse-Kubitza

fix: lib/tnrs.py: max_names: lowered to 50 because the dev TNRS server is now always crashing with an Internal Server Error when scrubbing 500 names at a time (https://github.com/iPlantCollaborativeOpenSource/TNRS/issues/7)
13597 06/02/2014 04:24 PM Aaron Marcuse-Kubitza

fix: lib/tnrs.py: Constrain by Source: turn it on so that the download settings reflect what TNRS actually used, while this is broken
13596 06/02/2014 06:19 AM Aaron Marcuse-Kubitza

fix: lib/tnrs.py: max_names: reduced back to 500 because even 5000 crashes the dev TNRS server
13595 06/02/2014 05:52 AM Aaron Marcuse-Kubitza

lib/tnrs.py: max_names: reduced to 5000 because 100,000 causes an internal server error
13591 06/02/2014 04:50 AM Aaron Marcuse-Kubitza

lib/tnrs.py: switched to downloading all matches per name, as is needed to implement #917. note that this will break the parts of the schema that use the tnrs table, until Brad's match-picking algorithm can be implemented, but this tradeoff is necessary to be able to begin scrubbing sooner (Martha; wiki.vegpath.org/2014-05-29_conference_call#TNRS)
13562 05/30/2014 07:50 AM Aaron Marcuse-Kubitza

lib/tnrs.py: max_names: increased to 100000 because the dev server can handle more names (no simultaneous users), as decided in the conference call (wiki.vegpath.org/2014-05-29_conference_call#TNRS)
13559 05/30/2014 07:37 AM Aaron Marcuse-Kubitza

fix: lib/PostgreSQL-MySQL.csv: need to replace "double precision" with "double" to work with MySQL Workbench 5.2.47

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