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root/trunk @ 14038

Name Size Revision Age Author Comment
  BIEN2 12779 over 10 years Aaron Marcuse-Kubitza *{.sh,run}: use new begin_target instead of `ec...
  _archive 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
  _license 13771 over 10 years Aaron Marcuse-Kubitza schemas/VegBIEN/taxonomy/: moved into schemas/V...
  backups 13902 over 10 years Aaron Marcuse-Kubitza backups/TNRS.backup.md5: updated
  bin 14035 over 10 years Aaron Marcuse-Kubitza fix: bin/with_all: removed debug statements
  config 14037 over 10 years Aaron Marcuse-Kubitza config/VirtualBox_VMs/vegbiendev/README.TXT: `s...
  derived 13854 over 10 years Aaron Marcuse-Kubitza added derived/TNRS/web_app/protocol/
  downloads 13537 over 10 years Aaron Marcuse-Kubitza added downloads/
  exports 13929 over 10 years Aaron Marcuse-Kubitza exports/2014-6-4.Iara_Lacher.reserve_prioritiza...
  inputs 14038 over 10 years Aaron Marcuse-Kubitza fix: inputs/.IRMNG/*/: added _no_import because...
  issues 12124 almost 11 years Aaron Marcuse-Kubitza **/LICENSE.TXT: corrected "it recommended" to "...
  lib 14005 over 10 years Aaron Marcuse-Kubitza bugfix: lib/Firefox_bookmarks.reformat.csv: upd...
  mappings 13947 over 10 years Aaron Marcuse-Kubitza fix: mappings/VegCore-VegBIEN.csv: mapped DwC y...
  planning 13880 over 10 years Aaron Marcuse-Kubitza planning/meetings/BIEN conference call availabi...
  schemas 13962 over 10 years Aaron Marcuse-Kubitza schemas/util.sql: replace_words(): use map_word...
  validation 13963 over 10 years Aaron Marcuse-Kubitza validation/completeness/BIENDatesPopulated.xlsx...
  web 14006 over 10 years Aaron Marcuse-Kubitza web/links/index.htm: updated to Firefox bookmar...
  wiki 13787 over 10 years Aaron Marcuse-Kubitza **/LICENSE.TXT: use lowercase when there is a s...
.htaccess 326 Bytes 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
.rsync_filter.upload 33 Bytes 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
.rsync_ignore 12 Bytes 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
LICENSE.TXT 6.17 KB 13787 over 10 years Aaron Marcuse-Kubitza **/LICENSE.TXT: use lowercase when there is a s...
Makefile 12.7 KB 14031 over 10 years Aaron Marcuse-Kubitza /Makefile: db: use reinstall instead of install...
README.TXT 34 KB 13942 over 10 years Aaron Marcuse-Kubitza bugfix: /README.TXT: to synchronize vegbiendev,...
fix_perms 97 Bytes 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
map 1001 Bytes 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
new_terms.csv 80.2 KB 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
run 518 Bytes 12968 over 10 years Aaron Marcuse-Kubitza *{.sh,run}: runscript targets: use begin_target...
unmapped_terms.csv 33 KB 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
  • svn:ignore: extern

Latest revisions

# Date Author Comment
14038 07/14/2014 09:19 PM Aaron Marcuse-Kubitza

fix: inputs/.IRMNG/*/: added _no_import because this datasource is only used as a lookup table and does not need to be imported/scrubbed
14037 07/14/2014 09:18 PM Aaron Marcuse-Kubitza

config/VirtualBox_VMs/vegbiendev/README.TXT: `svn up`: documented runtime (1 min)
14036 07/14/2014 08:24 PM Aaron Marcuse-Kubitza

bugfix: added nodes/_no_import, because the NCBI import doesn't work due to a Postgres 9.3 bug (#859). _no_import used to not be needed because we didn't import the hidden sources.
14035 07/14/2014 08:05 PM Aaron Marcuse-Kubitza

fix: bin/with_all: removed debug statements
14034 07/14/2014 05:19 PM Aaron Marcuse-Kubitza

bugfix: bin/with_all: testing if @inputs is set: `"${inputs+isset}"` syntax doesn't work for empty arrays, so need to use `declare -p` instead
14033 07/14/2014 04:46 PM Aaron Marcuse-Kubitza

bugfix: to set up the VM: to use a database backup: also need to `make rm_initial_public` because initdb creates a non-empty DB
14032 07/14/2014 04:42 PM Aaron Marcuse-Kubitza

config/VirtualBox_VMs/vegbiendev/README.TXT: to test the import: added steps to test a different revision
14031 07/14/2014 04:40 PM Aaron Marcuse-Kubitza

/Makefile: db: use reinstall instead of install to allow running this on an existing DB
14030 07/14/2014 02:49 PM Aaron Marcuse-Kubitza

config/VirtualBox_VMs/vegbiendev/README.TXT: `sudo apt-get dist-upgrade`: documented runtime (12 min)
14029 07/14/2014 02:47 PM Aaron Marcuse-Kubitza

config/VirtualBox_VMs/vegbiendev/README.TXT: updated VM snapshot names

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