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root/trunk @ 14448

Name Size Revision Age Author Comment
  BIEN2 12779 over 10 years Aaron Marcuse-Kubitza *{.sh,run}: use new begin_target instead of `ec...
  _archive 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
  _license 14301 over 10 years Aaron Marcuse-Kubitza added derived/TNRS/Morphospecies and scope.eml*...
  backups 14427 over 10 years Aaron Marcuse-Kubitza backups/TNRS.backup.md5: updated
  bin 14443 over 10 years Aaron Marcuse-Kubitza bin/make_analytical_db: materialize viewFullOcc...
  config 14408 over 10 years Aaron Marcuse-Kubitza **: updated to use the local machine's new host...
  derived 14298 over 10 years Aaron Marcuse-Kubitza added derived/TNRS/Morphospecies and scope.eml*...
  downloads 13537 over 10 years Aaron Marcuse-Kubitza added downloads/
  exports 14446 over 10 years Aaron Marcuse-Kubitza exports/geoscrub_input.csv.run: export_(): upda...
  inputs 14448 over 10 years Aaron Marcuse-Kubitza inputs/.TNRS/schema.sql: taxon_match: removed n...
  issues 12124 almost 11 years Aaron Marcuse-Kubitza **/LICENSE.TXT: corrected "it recommended" to "...
  lib 14412 over 10 years Aaron Marcuse-Kubitza bugfix: lib/sh/util.sh: str2varname(): need to ...
  mappings 13947 over 10 years Aaron Marcuse-Kubitza fix: mappings/VegCore-VegBIEN.csv: mapped DwC y...
  planning 13880 over 10 years Aaron Marcuse-Kubitza planning/meetings/BIEN conference call availabi...
  schemas 14448 over 10 years Aaron Marcuse-Kubitza inputs/.TNRS/schema.sql: taxon_match: removed n...
  validation 13963 over 10 years Aaron Marcuse-Kubitza validation/completeness/BIENDatesPopulated.xlsx...
  web 14408 over 10 years Aaron Marcuse-Kubitza **: updated to use the local machine's new host...
  wiki 13787 over 10 years Aaron Marcuse-Kubitza **/LICENSE.TXT: use lowercase when there is a s...
.htaccess 326 Bytes 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
.rsync_filter.upload 33 Bytes 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
.rsync_ignore 12 Bytes 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
LICENSE.TXT 6.17 KB 13787 over 10 years Aaron Marcuse-Kubitza **/LICENSE.TXT: use lowercase when there is a s...
Makefile 12.9 KB 14068 over 10 years Aaron Marcuse-Kubitza bugfix: /Makefile: postgres_restart-*: argument...
README.TXT 35.1 KB 14447 over 10 years Aaron Marcuse-Kubitza /README.TXT: Full database import: added steps ...
fix_perms 97 Bytes 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
map 1001 Bytes 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
new_terms.csv 80.2 KB 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
run 518 Bytes 12968 over 10 years Aaron Marcuse-Kubitza *{.sh,run}: runscript targets: use begin_target...
unmapped_terms.csv 33 KB 11970 almost 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
  • svn:ignore: extern

Latest revisions

# Date Author Comment
14448 08/10/2014 05:53 AM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: taxon_match: removed no longer used scrubbed_unique_taxon_name. the scrubbed name ranks are now generated from the other TNRS columns instead.
14447 08/10/2014 05:28 AM Aaron Marcuse-Kubitza

/README.TXT: Full database import: added steps to re-run geoscrubbing
14446 08/10/2014 05:22 AM Aaron Marcuse-Kubitza

exports/geoscrub_input.csv.run: export_(): updated runtime (30 s)
14445 08/10/2014 03:57 AM Aaron Marcuse-Kubitza

fix: exports/viewFullOccurrence_*.csv.run: need to limit # rows to 5000 as requested by Bob
14444 08/10/2014 03:42 AM Aaron Marcuse-Kubitza

schemas/public_.sql: viewFullOccurrence_*: documented materialize time
14443 08/09/2014 10:23 PM Aaron Marcuse-Kubitza

bin/make_analytical_db: materialize viewFullOccurrence_individual_view instead of analytical_stem_view because analytical_stem_view is now generatable via a simple join onto viewFullOccurrence_individual_view. this avoids running into potential disk space constraints when materializing and backing up both tables (~50 GB/table * 2 tables * 2 copies (incl. the backup) = 200 GB, which is very close to the available disk space).
14442 08/09/2014 10:17 PM Aaron Marcuse-Kubitza

schemas/public_.sql: analytical_stem_view: use new materialized viewFullOccurrence_individual
14441 08/09/2014 10:08 PM Aaron Marcuse-Kubitza

schemas/public_.sql: added viewFullOccurrence_individual by running viewFullOccurrence_individual_view_modify()
14440 08/09/2014 10:05 PM Aaron Marcuse-Kubitza

schemas/public_.sql: added viewFullOccurrence_individual_view_modify(), analogous to analytical_stem_view_modify()
14439 08/09/2014 09:52 PM Aaron Marcuse-Kubitza

bin/make_analytical_db: removed extra () around psql_verbose_vegbien

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