include ../input.Makefile

include ../input.Makefile

selfDir_XlThrr := $(dir $(lastword $(MAKEFILE_LIST)))

root := $(selfDir_XlThrr)../../..

include $(root)/lib/common.Makefile

##### Vars/functions

unzip = unzip -d $@ $<

##### General targets

all: _always extract ;

	$(MAKE) tables

##### Downloads

urlPrefix := http://apps.fs.fed.us/fiadb-downloads/

states := AS GU PW AL AK AZ AR CA CO CT DE DC FL GA HI ID IL IN IA KS KY LA ME\

MD MA MI MN MS MO MT NE NV NH NJ NM NY NC ND OH OK OR PA PR RI SC SD TN TX UT\

VT VI VA WA WV WI WY

allZips := $(states:%=%.zip)

download: _always $(allZips) ;

%.zip:

	-curl --fail --output $@ $(urlPrefix)$@

# ignore errors for states which don't have a download

##### Extraction

zips := $(allZips)

dirs := $(zips:%.zip=%)

extract: _always $(dirs) ;

%: %.zip

	$(if $(wildcard $@),,$(unzip) || mkdir -p $@)

##### Table bundling

refCsvPattern := FIADB_REFERENCE/%.CSV

refCsvPattern* := $(subst %,*,$(refCsvPattern))

refDirCsvs := $(wildcard $(refCsvPattern*))

refTables := $(patsubst $(refCsvPattern),%,$(refDirCsvs))

refDirs := $(refTables:%=../%)

csvPattern = $(dir)/$(dir)_%.CSV

csvPattern* = $(subst %,*,$(csvPattern))

dirCsvs = $(wildcard $(csvPattern*))

dirTables = $(patsubst $(csvPattern),%,$(dirCsvs))

tableNames := $(sort $(foreach dir,$(dirs),$(dirTables)))

tableDirs := $(tableNames:%=../%)

tables: _always $(refDirs) $(tableDirs) ;

tableCsvs = $(wildcard $(foreach dir,$(dirs),$(subst %,$*,$(csvPattern))))

$(tableDirs): ../%: _always

	$(call mkdir,$@)

	$(if $(tableCsvs),mv $(tableCsvs) $@)

../%: $(refCsvPattern) _always

	$(call mkdir,$@)

	mv $< $@

include ../input.Makefile

include ../input.Makefile

include ../input.Makefile

include ../input.Makefile

include ../input.Makefile

include ../input.Makefile

include ../input.Makefile

include ../input.Makefile

include ../input.Makefile

include ../input.Makefile

include ../input.Makefile

include ../lib/common.Makefile

# Paths

bin := ../bin

##### Input data

download: _always

	swap=1 $(bin)/sync_upload './**'

include ../input.Makefile

##### Configuration

remote_user ?= $(USER)

remote_host ?= jupiter

remote_basepath ?= /data/dev/aaronmk/bien

test ?=

##### Vars/functions

# Make

null :=

space := $(null) $(null)

comma := ,

and = $(if $(1),$(2))

or = $(1)$(2)

not = $(if $(1),,1)

require_var = $(if $($(1)),,$(error requires var $$$(1)))

pathParts = $(shell path="$(1)"; echo "$${path%%/*}" "$${path\#*/}")

topDir = $(word 1,$(pathParts))

subPath = $(word 2,$(pathParts))

subMake = $(MAKE) $(call subPath,$@) --directory=$(call topDir,$@)

# input.Makefile path is relative to subdir

# Formatting

sed = sed -$(if $(filter Darwin,$(os)),E,r)

_2Space = $(subst _,$(space),$(1))

*2Space = $(call _2Space,$*)

ucase = $(shell echo "$(1)"|tr "[a-z]" "[A-Z]")

ci = $(1) $(ucase)

# Filesystem

wildcard/ = $(wildcard $(shell bash -c 'shopt -s nullglob; echo $(1)'))

    # needed because builtin $(wildcard) doesn't do / suffix correctly

    # need final pass with $(wildcard) to support inputs without wildcard chars

no/ = $(1:/=)# remove trailing /

+w = $(wildcard $+)# existing items in $+

CP := cp -p

cp = $(CP) $< $@

mkdir = $(if $(wildcard $(1)),,mkdir -p $(1))

# File editing

sudoAppend = echo $$'$(2)'|sudo tee -a $(1) >/dev/null

# System

os := $(shell uname)

isMac := $(filter Darwin,$(os))

forOs = $(patsubst %,%-$(filter Linux Darwin,$(os)),$(1))

dateFmt := %-Y-%-m-%-d %-H:%M:%S %Z

date = $(shell date +"$(dateFmt)")

mtime = $(shell $(if $(isMac),stat -f %Sm -t "$(dateFmt)" $(1),date\

--reference=$(1) +"$(dateFmt)"))

nice := nice -n +10 # +5 still leaves the shell sluggish

# Terminal

esc := '['

reset := $(esc)'0m'

emph := $(esc)'7m '

endEmph := ' '$(reset)

# User interaction

done = echo; echo $(emph)"Finished $@"$(endEmph); echo

wait := read -p $(emph)'Press ENTER to continue:'$(endEmph) REPLY

# Requires `SHELL := /bin/bash`

confirm = $(if $(shell read -p $(emph)"$(1)"$(endEmph)$$'$(if\

$(2),\n$(2))\nContinue? (y/n) ' REPLY; test "$$REPLY" = y && echo t),,\

$(error Aborting))

## SVN

addFile = $(if $(wildcard $(1)),,touch $(1) && )svn add --force $(1)

addDir = $(if $(wildcard $(1)/),svn add --force --depth=empty $(1),svn mkdir $(1))

add* = $(if $(1),svn add --force --depth=empty $(wildcard $(1)))

	# $(wildcard __): prevent error "Could not add all targets because some

	# targets don't exist"

# Revisions

revision = $(shell svn info $(1)|$(sed) -n 's/^Last Changed Rev: (.*)$$/\1/p')

rootRevision = $(call revision,$(root))

version ?= r$(rootRevision)

# rsync

rsync* := "time" rsync$(if $(test), --dry-run) --archive --no-group --update \

--verbose --itemize-changes --progress

rsync := $(rsync*) --exclude=".svn/" --exclude="*\#" --exclude=".DS_Store"\

--exclude=".lk*"

local := ./

localDirName := $(notdir $(realpath $(local)))

remote := $(remote_user)@$(remote_host):$(remote_basepath)/$(localDirName)/

# DB

postgres := postgres

asAdmin := sudo -E -u $(postgres)

psqlOpts := --set ON_ERROR_STOP=1 --quiet

psqlAsAdmin := $(asAdmin) psql -U postgres $(psqlOpts)

    # -E preserves env vars so PGOPTIONS is passed to psql

mkSchemaCmd = 'CREATE SCHEMA "$(1)";'

rmSchemaCmd = 'DROP SCHEMA IF EXISTS "$(1)" CASCADE;'

##### General targets

all: # must be first target in Makefile, so add an empty version here

.SUFFIXES: # turn off built-in suffix rules

.SECONDARY: # don't automatically delete intermediate files

.DELETE_ON_ERROR: # delete target if recipe fails

_always:

.PHONY: _always

clean: # make sure `make clean` always works

%/remake: _always

	$(MAKE) $(@D)/clean

	$(MAKE) $(@D)/

# re-run make so that cache of existing files is reset

%-remake: _always

	rm -f $*

	$(MAKE) $*

# re-run make so that cache of existing files is reset

%/reinstall: _always %/uninstall %/install ;

%/live: _always

	$(MAKE) $* live=1

# Run with `make -s` to avoid echoing make commands

version: _always

	echo $(version)

##### Checksums

%.md5: %

	$(nice) md5sum $<|cut -d ' ' -f 1 >$@

# Run with `make -s` to avoid echoing make commands

%.md5/test: %.md5 % _always

	echo '$(shell cat $<)  $*'|$(nice) md5sum -$(if $(isMac),v)c /dev/stdin

##### Compression

define gunzip

gunzip <$< >$@

touch -r $< $@

endef

%:: %.gz

	$(if $(wildcard $@),,$(gunzip))

define gzip

gzip <$< >$@

touch -r $< $@

endef

ifneq ($(filter %.gz,$(MAKECMDGOALS)),)

%.gz: %

	$(if $(wildcard $@),,$(gzip))

endif

include ../input.Makefile

selfDir_NzrNZp := $(dir $(lastword $(MAKEFILE_LIST)))

root := $(selfDir_NzrNZp)..

include $(root)/lib/common.Makefile

##### Vars/functions

# Make

SHELL := /bin/bash

# Paths

bin := $(root)/bin

# DB

psqlNoSearchPath := env no_search_path=1 $(bin)/psql_script_vegbien

pg_dump := $(bin)/pg_dump_vegbien

backup := "time" env data=1 $(pg_dump)

restore := "time" $(bin)/postgres_vegbien pg_restore --exit-on-error --verbose

restoreBien := $(restore) --dbname=vegbien

# pg_restore doesn't support PGDATABASE env var

##### Backups

backups := $(wildcard *.backup)

#### Checksums

md5s: _always $(backups:%=%.md5) ;

#### SQL

# Must come before %.sql with no prerequisites to be matched first

%.sql: %

	$(restore) $< >$@

# Full DB

# Must come before %.backup to be matched first

vegbien.%.backup:

	$(backup) all >$@

	$(MAKE) $@.md5

backup* = $(backup) $* >$@

# Note: This can't be used for the current (unrotated) public schema because

# pg_dump doesn't back up the CREATE SCHEMA statement for it, assuming falsely

# that public already exists because it's in template1.

%.backup:

	$(backup*)

	$(MAKE) $@.md5

# When testing, turn off %.sql so make won't skip `%.sql: %` in favor of it

ifeq ($(filter %.backup/test,$(MAKECMDGOALS)),)

%.sql:

	env plain=1 $(backup*)

endif

# runtime: 11 h ("10:50:23elapsed"); ~5 h to insert data

%.backup/restore: %.backup _always

	$(restoreBien) $<

%.sql/restore: %.sql _always

	$(bin)/psql_script_vegbien <$<

# pg_restore only supports "non-plain-text formats"

# (http://www.postgresql.org/docs/9.1/static/app-pgrestore.html)

%.backup/test: %.backup.sql _always

	rm $<

#### Archived imports

confirmRm = $(call confirm,WARNING: This will delete the archived import $(1)!)

public* = $(*:vegbien.%=%)

%.backup/remove: %.backup _always

	@$(call confirmRm,$(public*))

	echo $(call rmSchemaCmd,$(public*))|$(psqlNoSearchPath)

##### Synchronization

rsyncBackups := $(rsync) --include="/*.backup" --include="/*.sql"\

--include="/*.csv" --include="/*.md5" --exclude="**"

upload: _always

	$(bin)/sync_upload './**'

%/download: _always

	-$(if $(filter %.md5,$*),,$(MAKE) $*.md5/download)

	$(rsync) $(remote)$* $(local)$*

# ignore errors if $*.md5 does not exist

include ../input.Makefile

include ../input.Makefile

include ../input.Makefile

include ../input.Makefile

include ../input.Makefile

include ../input.Makefile

include ../input.Makefile

include ../input.Makefile

include ../input.Makefile

include ../input.Makefile

include ../input.Makefile

include ../input.Makefile

include ../input.Makefile

include ../input.Makefile

include ../input.Makefile

include ../input.Makefile

include ../input.Makefile

include ../input.Makefile

include ../input.Makefile

include ../../../lib/common.Makefile

types := schema data

all: $(types:%=GBIFPortalDB-2013-02-20.%.sql) ;

%.schema.sql: ../_src/%.dump

	./MySQL_schema <$< >$@

%.data.sql: ../_src/%.dump

	./MySQL_data agent data_provider data_provider_agent data_resource \

data_resource_agent raw_occurrence_record <$< >$@

include ../input.Makefile

include ../input.Makefile

include ../input.Makefile

include ../input.Makefile

root := .

include lib/common.Makefile

##### Vars/functions

# Make

SHELL := /bin/bash

# Paths

bin := bin

##### Environment

export PGOPTIONS = --client-min-messages=WARNING

##### General targets

remake: _always clean

	$(MAKE)

# re-run make so that cache of existing files is reset

##### Installation

# public must be installed *after* inputs because some views depend on inputs

# schemas/public/install also tests that a clean public schema will be

# installable by full-database import

install: _always bin/install config/download/live core mysql \

inputs/download/live inputs/install schemas/public/reinstall

	@$(done)

# schemas/public/install would errexit if the public schema already exists

uninstall: _always rm_mysql rm_core ;

reinstall: _always uninstall install ;

##### bin/install: live and test environments

define uutils_install

(mkdir -p ~/software/uutils/; cd ~/software/uutils/; \

svn co http://uutils.googlecode.com/svn/trunk/ .; make install)

@echo $(emph)'reload PATH:'$(endEmph)

@echo 'press Enter'

@echo 'press Ctrl-D'

@echo 'reopen the terminal window'

@echo 'rerun `make install`'

@$(wait)

@false

endef

uutils_install? = $(if $(wildcard ~/software/uutils/),,$(uutils_install))

bin/install: _always

	$(uutils_install?)

	mkdir -p ~/bin

	-ln -s $(realpath bin/make) ~/bin

# ignore errors if file exists

##### Core: VegBIEN DB and dependencies

core: _always $(call forOs,apache python php postgres misc) db

	@$(done)

rm_core: _always rm_db ;

reinstall_core: _always rm_core core ;

##### Apache

apache-Linux: _always

	# Apache 2.4, which comes with Ubuntu 14.04

	-sudo apt-get --yes install apache2

	#-sudo apt-get --yes install libapache2-mod-php5

apache-Darwin: _always ;

##### Python

python-Linux: _always

	-sudo apt-get --yes install python

	-sudo apt-get --yes install python3

	-sudo apt-get --yes install python-dev

	-sudo apt-get --yes install python-dateutil

	-sudo apt-get --yes install python-parallel

	-sudo apt-get --yes install python-profiler

	-sudo apt-get --yes install python-pip

	-sudo apt-get --yes install pymetrics

python-Darwin: _always

	@# Python 2 comes preinstalled

	@echo $(emph)'Installing Python 3.2 on Mac OS X:'$(endEmph)

	@echo 'Download it: http://www.python.org/ftp/python/3.2.3/python-3.2.3-macosx10.6.dmg'

	@echo 'Open the disk image'

	@echo 'Run the installer in it'

	@$(wait)

	@echo $(emph)'Installing python-dateutil on Mac OS X:'$(endEmph)

	@echo 'Download it for Python 2: http://labix.org/download/python-dateutil/python-dateutil-1.5.tar.gz'

	@echo 'Extract the archive'

	@echo 'Change to the directory of the extracted files'

	@echo 'Run python setup.py build'

	@echo 'Run sudo python setup.py install'

	@echo "Run python -c 'import dateutil'"

	@echo 'Download it for Python 3: http://labix.org/download/python-dateutil/python-dateutil-2.0.tar.gz'

	@echo 'Extract the archive'

	@echo 'Change to the directory of the extracted files'

	@echo 'Run python3 setup.py build'

	@echo 'Run sudo python3 setup.py install'

	@echo "Run python3 -c 'import dateutil'"

	@$(wait)

	@echo $(emph)'Installing pip on Mac OS X:'$(endEmph)

	@echo 'Follow the instructions at http://www.pip-installer.org/en/latest/installing.html'

	@$(wait)

##### PHP

php-Linux: _always

	-sudo apt-get --yes install php-http-request

php-Darwin: _always

	@echo $(emph)'Installing PHP PEAR and HTTP_Request on Mac OS X:'$(endEmph)

	@echo 'Download http://pear.php.net/go-pear.phar'

	@echo 'Change to the directory of the downloaded file'

	@echo 'Run php -d detect_unicode=0 go-pear.phar'

	@echo 'Whenever prompted, press Enter to select default options'

	@echo 'Add $$HOME/pear/bin to your $$PATH'

	@echo 'Add $(HOME)/pear/share/pear to your php.ini include_path'

	@echo 'If needed, set $$PHPRC to your php.ini'

	@echo "Run pear install HTTP_Request"

	@echo 'To run a php command: php -c <php.ini-path> ...'

	@$(wait)

##### PostgreSQL

define editPhppgadmin

-sudo patch /etc/phppgadmin/config.inc.php lib/phpPgAdmin.config.inc.php.diff

sudo cp -n /usr/share/phppgadmin/login.php /usr/share/phppgadmin/login.php.old

-sudo patch /usr/share/phppgadmin/login.php lib/phpPgAdmin.login.php.diff

endef

# ignore errors if patch has already been applied

asBien := sudo -E -u bien

pgVersion = "$$(env minor=1 bin/pg_version)"

linuxPostgresDir := /etc/postgresql/9.3/main

define pg_ctl-Linux

$(asAdmin) /etc/init.d/postgresql $(1)\

# if doesn'\''t work, run `rm $(linuxPostgresDir)/postmaster.pid` and retry

endef

macPostgresDir := /usr/local/var/postgres

define pg_ctl-Darwin

brew services $(1) postgresql\

# if doesn'\''t work, run `rm $(macPostgresDir)/postmaster.pid` and retry

endef

#pg_ctl -D $(macPostgresDir) $(1)

postgres_restart: postgres_restart-$(os) _always ;

postgres_restart-Linux: _always

	@# for some reason, pg_ctl does not work when run inside make

	@echo $(emph)'restart PostgreSQL manually:'$(endEmph)

	@echo '$(call pg_ctl-$(os),restart)'

	@$(wait)

postgres_restart-Darwin: _always

	@# for some reason, pg_ctl does not work when run inside make

	@echo $(emph)'restart PostgreSQL manually:'$(endEmph)

	@echo '$(call pg_ctl-$(os),restart)'

	@$(wait)

confirmPostgresReload = $(call confirm,Modifying postgresql.conf and pg_hba.conf)

define postgresReload-Linux

@$(confirmPostgresReload)

@echo $(emph)'kernel.shmmax must be set to at least 4GB minus 1 byte:'$(endEmph)

@echo 'Append the following to /etc/sysctl.conf:'

@echo 'kernel.shmmax=4294967295'

@$(wait)

chmod a+r schemas/*.conf || $(asBien) chmod a+r schemas/*.conf

-$(asAdmin) mv -n $(linuxPostgresDir)/postgresql.conf $(linuxPostgresDir)/postgresql.conf.old

$(asAdmin) cp --preserve=timestamps schemas/postgresql.conf $(linuxPostgresDir)/postgresql.conf

-$(asAdmin) mv -n $(linuxPostgresDir)/pg_hba.conf $(linuxPostgresDir)/pg_hba.conf.old

$(asAdmin) cp --preserve=timestamps schemas/pg_hba.conf $(linuxPostgresDir)/pg_hba.conf

$(MAKE) postgres_restart-$(os)

endef

define postgresReload-Darwin

@$(confirmPostgresReload)

chmod a+r schemas/*.conf

-$(asAdmin) mv -n $(macPostgresDir)/postgresql.conf $(macPostgresDir)/postgresql.conf.old

$(asAdmin) cp schemas/postgresql.Mac.conf $(macPostgresDir)/postgresql.conf

-$(asAdmin) mv -n $(macPostgresDir)/pg_hba.conf $(macPostgresDir)/pg_hba.conf.old

$(asAdmin) cp schemas/pg_hba.Mac.conf $(macPostgresDir)/pg_hba.conf

-$(asAdmin) mv -n $(macPostgresDir)/pg_ident.conf $(macPostgresDir)/pg_ident.conf.old

$(asAdmin) cp schemas/pg_ident.Mac.conf $(macPostgresDir)/pg_ident.conf

$(MAKE) postgres_restart-$(os)

endef

postgres_reload: _always

	$($(call forOs,postgresReload))

phppgadmin-Linux: _always

	-sudo apt-get --yes install phppgadmin

	$(editPhppgadmin)

	-sudo ln -s ../conf.d/phppgadmin /etc/apache2/conf-available/phppgadmin.conf

	sudo a2enconf phppgadmin

	-sudo apache2ctl restart

postgres-Linux: _always

	-sudo apt-get --yes install postgresql-9.3

	-sudo apt-get --yes install postgresql-contrib-$(pgVersion)

	-sudo apt-get --yes install postgresql-plpython3-$(pgVersion)

	-sudo apt-get --yes install libpq-dev

	-sudo apt-get --yes install postgresql-$(pgVersion)-postgis-2.1-scripts

	-sudo apt-get --yes install postgresql-$(pgVersion)-postgis-2.1

	-sudo apt-get --yes install pgadmin3

	-$(MAKE) phppgadmin-Linux

	-sudo pip install psycopg2

	$(postgresReload-Linux)

# run pg_version inline because it needs postgresql to be installed first

# ignore errors if conf files already edited

postgres-Darwin: _always

	ruby -e "$(curl -fsSL https://raw.github.com/Homebrew/homebrew/go/install)"

	brew doctor

	brew install postgis # also installs PostgreSQL

	-$(postgresReload-Darwin)

	-sudo easy_install psycopg2

	$(postgresReload-Darwin)

postgres-: _always ; # other OSes

psqlAsAdminVegbien := $(psqlAsAdmin) vegbien

# **IMPORTANT**: must use = instead of := because these files are not available

#  until config/download/live has run

bienPassword = $(shell cat config/bien_password)

bienReadPassword = $(shell cat config/bien_read_password)

##### Misc.

misc-Linux: _always

	cp -p "$(shell which dotlockfile)" bin/

	-sudo apt-get --yes install htop

	-sudo apt-get --yes install jedit

misc-Darwin: _always ;

##### VegBIEN DB

#### DB and users

confirmRmDb = $(call confirm,WARNING: This will delete your entire VegBIEN\

DB!,This includes all archived imports and staging tables.)

confirmRmPublicSchema = $(call confirm,WARNING: This will delete the current\

public schema of your VegBIEN DB!,To save it: make schemas/rotate)

rmPublicSchema := $(call rmSchemaCmd,public)

db: mk_db rm_initial_public schemas/reinstall _always ;

mk_db: _always

	-echo "CREATE USER public_ PASSWORD 'password';"|$(psqlAsAdmin)

	-echo "CREATE USER bien PASSWORD '$(bienPassword)';"|$(psqlAsAdmin)

	-echo "CREATE USER bien_read PASSWORD '$(bienReadPassword)' IN ROLE bien \

NOINHERIT;"|$(psqlAsAdmin)

	-echo "CREATE DATABASE vegbien WITH OWNER bien TEMPLATE template1 \

ENCODING 'UTF8' LC_COLLATE 'en_US.UTF-8' LC_CTYPE 'en_US.UTF-8';"|$(psqlAsAdmin)

	-echo "CREATE EXTENSION hstore SCHEMA pg_catalog;"|$(psqlAsAdminVegbien)

	-echo "CREATE EXTENSION plpython3u;"|$(psqlAsAdminVegbien)

	-echo 'CREATE SCHEMA postgis;'|$(psqlAsAdminVegbien)

	-echo 'GRANT USAGE ON SCHEMA postgis TO public;'|$(psqlAsAdminVegbien)

	-echo 'CREATE EXTENSION postgis SCHEMA postgis;'\

|$(psqlAsAdminVegbien)

	# unset ON_ERROR_STOP so user-exists errors don't prevent further user-adds

	-cat config/users.sql|$(psqlAsAdmin) --set ON_ERROR_STOP

# ignore errors if user/database/etc. exists

rm_initial_public: _always

	@$(confirmRmPublicSchema)

	echo $(rmPublicSchema)|$(psqlAsAdminVegbien)

# drop public schema *as admin* because it starts out owned by postgres

rm_db: _always

	@$(confirmRmDb)

	echo "DROP DATABASE IF EXISTS vegbien;"|$(psqlAsAdmin)

	echo "DROP USER IF EXISTS bien_read;"|$(psqlAsAdmin)

	echo "DROP USER IF EXISTS bien;"|$(psqlAsAdmin)

	echo "DROP USER IF EXISTS public_;"|$(psqlAsAdmin)

reinstall_db: _always rm_db db ;

##### MySQL

mysql: _always $(call forOs,mysql) mysql_users

	@$(done)

rm_mysql: _always rm_mysql_users ;

mysql-Linux: _always

	@echo $(emph)"If asked for MySQL root password, enter $(bienPassword)"$(endEmph)

	@$(wait)

	-sudo apt-get --yes install mysql-server

	-sudo apt-get --yes install mysql-client

	-sudo apt-get --yes install mysql-workbench

	-sudo apt-get --yes install python-mysqldb

	-sudo apt-get --yes install phpmyadmin

mysql-Darwin: _always

	@echo $(emph)'Installing MySQLdb Python driver on Mac OS X 10.7 (may work on other versions):'$(endEmph)

	@echo 'Download it using "latest version" link at http://sourceforge.net/projects/mysql-python/files/'

	@echo 'Extract the archive'

	@echo '(From http://www.rustyrazorblade.com/2011/11/installing-mysqldb-on-macos-lion/:)'

	@echo 'Run ln -s /usr/local/mysql/lib/libmysqlclient.18.dylib /usr/lib/libmysqlclient.18.dylib'

	@echo 'Run ln -s /usr/local/mysql/lib /usr/local/mysql/lib/mysql'

	@echo '(From http://blog.infoentropy.com/MySQL-python_EnvironmentError_mysql_config_not_found:)'

	@echo 'Edit site.cfg and change the line like "mysql_config = " to "mysql_config = /usr/local/mysql/bin/mysql_config"'

	@echo '(From http://www.mangoorange.com/2008/08/01/installing-python-mysqldb-122-on-mac-os-x/:)'

	@echo 'Change to the directory of the extracted files'

	@echo 'Run python setup.py clean'

	@echo 'Run python setup.py build'

	@echo 'Run sudo python setup.py install'

	@echo "Run python -c 'import MySQLdb'"

	@$(wait)

mysql-: _always # other OSes

mysqlAsRoot := mysql --user=root --password='$(bienPassword)'

mysql_users: _always

	-echo "CREATE USER 'bien'@'localhost' IDENTIFIED BY '$(bienPassword)';"\

|$(mysqlAsRoot)

	-echo "CREATE USER 'bien_read'@'%' IDENTIFIED BY '$(bienReadPassword)';"\

|$(mysqlAsRoot)

# ignore errors if user exists

rm_mysql_users: _always

	-echo "DROP USER 'bien_read'@'localhost';"|$(mysqlAsRoot)

	-echo "DROP USER 'bien'@'%';"|$(mysqlAsRoot)

# ignore errors if user exists

##### Datasources

inputs: _always inputs/all ;

import: _always import-msg inputs/import_scrub ;

import-msg: _always

	@echo $(emph)"To import all inputs at once:"$(endEmph) . bin/import_all

	@echo

scrub: _always inputs/.TNRS/tnrs/tnrs-remake ;

verify: _always inputs/verify

	@$(done)

test: _always inputs/test

	@$(done)

##### Testing

test-all: _always remake test missing_mappings

	@$(done)

##### Subdir forwarding

# Must come last so overridden targets are not forwarded

define subdirTargets

$(subdir): _always

	+$$(subMake)

$(subdir)%: _always

	+$$(subMake)

.PRECIOUS: $(subdir)% # let subdir's Makefile decide whether to delete on error

$(subdir)reinstall: _always $(subdir)uninstall $(subdir)install ;

endef

$(foreach subdir,$(wildcard */),$(eval $(subdirTargets)))

Makefile: ;

%: $(addsuffix %,$(dir $(shell echo */Makefile))) _always ;

#### Overrides of forwarded commands

# commented out to avoid a cascade of "overriding commands for target" warnings

#inputs/reinstall: _always

#	echo '. bin/reinstall_all; wait'|bash -s

#### Maps validation

termsSubdirs := $(call no/,$(call wildcard/,inputs/*/))

include lib/mappings.Makefile