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Name Size Revision Age Author Comment
  _archive 258 almost 13 years Aaron Marcuse-Kubitza Moved pre-BIEN 3 files into _archive folder
  bin 1553 over 12 years Aaron Marcuse-Kubitza env_password: Print Usage message if run withou...
  config 272 almost 13 years Aaron Marcuse-Kubitza Moved bien_password to new config dir
  inputs 1549 over 12 years Aaron Marcuse-Kubitza inputs/CTFS: Added remaining non-data src files
  lib 1563 over 12 years Aaron Marcuse-Kubitza xml_dom.py: minidom modifications: Escape as ma...
  mappings 1540 over 12 years Aaron Marcuse-Kubitza mappings/DwC2-VegBIEN.specimens.csv: Mapped est...
  schemas 1561 over 12 years Aaron Marcuse-Kubitza schemas/tree_cross-links.sql: Added comment for...
  to_do 811 almost 13 years Aaron Marcuse-Kubitza Added to_do/milestones.doc
Makefile 6.89 KB 1550 over 12 years Aaron Marcuse-Kubitza Renamed import-all to import_all to match conve...
README.TXT 1.8 KB 1556 over 12 years Aaron Marcuse-Kubitza README.TXT: Added instructions how to stop all ...
map 867 Bytes 1299 over 12 years Aaron Marcuse-Kubitza map: On nimoy, use bien2_staging unless otherwi...

Latest revisions

# Date Author Comment
1563 03/23/2012 02:47 PM Aaron Marcuse-Kubitza

xml_dom.py: minidom modifications: Escape as many text strings as we use directly. This still leaves the tagName used by xml.dom.minidom.Element.writexml: It uses 'writer.write(indent+"<" + self.tagName)' and doesn't escape the tagName.

1562 03/23/2012 02:39 PM Aaron Marcuse-Kubitza

xml_func.py: Made everything Unicode-safe by using strings.ustr instead of str

1561 03/23/2012 12:48 PM Aaron Marcuse-Kubitza

schemas/tree_cross-links.sql: Added comment for how to get the namedplace trigger from the provided plantname trigger

1560 03/23/2012 12:44 PM Aaron Marcuse-Kubitza

vegbien.sql: Fixed bug in tree cross-link algorithm where recursion to descendants' ancestors did not use new to refer to the current node's plantname_id

1559 03/23/2012 12:39 PM Aaron Marcuse-Kubitza

vegbien.sql: Fixed bug in tree cross-link algorithm to also insert ancestors for top-level nodes, because they now need an ancestor entry for themselves

1558 03/23/2012 12:28 PM Aaron Marcuse-Kubitza

Added separate SQL file for tree cross-links code. A link to this can be e-mailed to people to review.

1557 03/23/2012 12:21 PM Aaron Marcuse-Kubitza

vegbien.sql: Modified tree cross-link algorithm to add an "ancestor" for this node. This is useful for queries, because you don't have to separately test if the leaf node is the one you're looking for, in addition to that leaf node's ancestors.

1556 03/22/2012 07:08 PM Aaron Marcuse-Kubitza

README.TXT: Added instructions how to stop all running imports

1555 03/22/2012 06:59 PM Aaron Marcuse-Kubitza

vegbien.sql: Added namedplace_update_ancestors and plantname_update_ancestors triggers to populate ancestor cross-links in new namedplace_ancestor and plantname_ancestor tables

1554 03/22/2012 06:07 PM Aaron Marcuse-Kubitza

sql.py: insert() (and try_insert()): Added optional returning param to provide name of an inserted column (usually pkey) to return

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