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Name Size Revision Age Author Comment
  _archive 258 about 13 years Aaron Marcuse-Kubitza Moved pre-BIEN 3 files into _archive folder
  bin 1578 almost 13 years Aaron Marcuse-Kubitza filter_errors: Default to outputing only the fi...
  config 272 about 13 years Aaron Marcuse-Kubitza Moved bien_password to new config dir
  inputs 1575 almost 13 years Aaron Marcuse-Kubitza input.Makefile: import: Removed verbose=1 becau...
  lib 1581 almost 13 years Aaron Marcuse-Kubitza xml_func.py: XML functions that assume their la...
  mappings 1540 almost 13 years Aaron Marcuse-Kubitza mappings/DwC2-VegBIEN.specimens.csv: Mapped est...
  schemas 1561 almost 13 years Aaron Marcuse-Kubitza schemas/tree_cross-links.sql: Added comment for...
  to_do 811 almost 13 years Aaron Marcuse-Kubitza Added to_do/milestones.doc
Makefile 6.89 KB 1550 almost 13 years Aaron Marcuse-Kubitza Renamed import-all to import_all to match conve...
README.TXT 1.8 KB 1556 almost 13 years Aaron Marcuse-Kubitza README.TXT: Added instructions how to stop all ...
map 867 Bytes 1299 almost 13 years Aaron Marcuse-Kubitza map: On nimoy, use bien2_staging unless otherwi...

Latest revisions

# Date Author Comment
1581 03/23/2012 05:33 PM Aaron Marcuse-Kubitza

xml_func.py: XML functions that assume their last argument is a value (_map, etc.): Use new helper function pop_value() to retrieve this value. Return None if value is None because this indicates the input is empty.

1580 03/23/2012 05:22 PM Aaron Marcuse-Kubitza

xml_func.py: _date: Use format.str2int instead of int to convert date parts to int so that strange formatting will be parsed correctly

1579 03/23/2012 05:21 PM Aaron Marcuse-Kubitza

format.py: clean_numeric(): Also fix some OCR errors

1578 03/23/2012 05:15 PM Aaron Marcuse-Kubitza

filter_errors: Default to outputing only the first match

1577 03/23/2012 04:59 PM Aaron Marcuse-Kubitza

xpath.py: Added append() to recursively append subpath to every leaf of a path tree. parse(): Use append() to fix bug in split path parsing where subpath was not added to every leaf of the tree, only the main leaf of the main branch and the main leaves of the other branches of the last element.

1576 03/23/2012 04:27 PM Aaron Marcuse-Kubitza

exc.py: Changed to store multiple tracebacks in an exception, in case an exception is caught and re-raised inside an ExceptionWithCause wrapper. This preserves more of the traceback in this situation, because you get the ExceptionWithCause's traceback as well.

1575 03/23/2012 03:53 PM Aaron Marcuse-Kubitza

input.Makefile: import: Removed verbose=1 because verbose mode is now automatically on (except in test mode)

1574 03/23/2012 03:52 PM Aaron Marcuse-Kubitza

bin/map: verbose mode defaults to off in test mode and on otherwise

1573 03/23/2012 03:48 PM Aaron Marcuse-Kubitza

bin/map: In verbose mode, print which input rows will be processed

1572 03/23/2012 03:40 PM Aaron Marcuse-Kubitza

bin/map: n option: Defaults to 1 in test mode. Empty string "" is interpreted as None (previously n would have to be unset to specify None).

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