Revision 1837
Added by Aaron Marcuse-Kubitza almost 13 years ago
| inputs/CTFS/test/VegX.organisms.xml.ref | ||
|---|---|---|
| 69 | 69 |
</taxonConcept> |
| 70 | 70 |
</taxonConcepts> |
| 71 | 71 |
<plotObservations> |
| 72 |
<plotObservation id="0"><obsStartDate>1981-05-03</obsStartDate></plotObservation> |
|
| 73 |
<plotObservation id="1"><obsStartDate>1981-05-03</obsStartDate></plotObservation> |
|
| 72 |
<plotObservation id="0"> |
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| 73 |
<obsStartDate>1981-05-03</obsStartDate> |
|
| 74 |
<partyWithRole><partyID>0</partyID></partyWithRole> |
|
| 75 |
<plotUniqueIdentifierID>0</plotUniqueIdentifierID> |
|
| 76 |
</plotObservation> |
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| 77 |
<plotObservation id="1"> |
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| 78 |
<obsStartDate>1981-05-03</obsStartDate> |
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| 79 |
<partyWithRole><partyID>1</partyID></partyWithRole> |
|
| 80 |
<plotUniqueIdentifierID>1</plotUniqueIdentifierID> |
|
| 81 |
</plotObservation> |
|
| 74 | 82 |
</plotObservations> |
| 83 |
<parties> |
|
| 84 |
<party id="0"><organizationName>CTFS</organizationName></party> |
|
| 85 |
<party id="1"><organizationName>CTFS</organizationName></party> |
|
| 86 |
</parties> |
|
| 87 |
<plots> |
|
| 88 |
<plot id="0"> |
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| 89 |
<plotName>3811</plotName> |
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<plotUniqueIdentifier>2733</plotUniqueIdentifier> |
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</plot> |
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<plot id="1"> |
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<plotName>3811</plotName> |
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<plotUniqueIdentifier>2733</plotUniqueIdentifier> |
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| 95 |
</plot> |
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| 96 |
</plots> |
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| 75 | 97 |
<individualOrganismObservations id="1"> |
| 76 | 98 |
<individualOrganismObservation> |
| 77 | 99 |
<individualOrganismID>1</individualOrganismID> |
| inputs/CTFS/test/VegBIEN.organisms.xml.ref | ||
|---|---|---|
| 1 | 1 |
<?xml version="1.0" ?> |
| 2 | 2 |
<VegBIEN> |
| 3 | 3 |
<taxonoccurrence id="0"> |
| 4 |
<locationevent_id><locationevent><obsstartdate>1981-05-03</obsstartdate></locationevent></locationevent_id> |
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| 4 |
<locationevent_id> |
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| 5 |
<locationevent> |
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| 6 |
<obsstartdate>1981-05-03</obsstartdate> |
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| 7 |
<datasource_id><party><organizationname>CTFS</organizationname></party></datasource_id> |
|
| 8 |
<authorlocationcode>3811</authorlocationcode> |
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| 9 |
<sourceaccessioncode>2733</sourceaccessioncode> |
|
| 10 |
</locationevent> |
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| 11 |
</locationevent_id> |
|
| 5 | 12 |
<aggregateoccurrence> |
| 6 | 13 |
<plantobservation_id> |
| 7 | 14 |
<plantobservation> |
| ... | ... | |
| 50 | 57 |
</taxondetermination> |
| 51 | 58 |
</taxonoccurrence> |
| 52 | 59 |
<taxonoccurrence id="1"> |
| 53 |
<locationevent_id><locationevent><obsstartdate>1981-05-03</obsstartdate></locationevent></locationevent_id> |
|
| 60 |
<locationevent_id> |
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| 61 |
<locationevent> |
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| 62 |
<obsstartdate>1981-05-03</obsstartdate> |
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| 63 |
<datasource_id><party><organizationname>CTFS</organizationname></party></datasource_id> |
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| 64 |
<authorlocationcode>3811</authorlocationcode> |
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| 65 |
<sourceaccessioncode>2733</sourceaccessioncode> |
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| 66 |
</locationevent> |
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| 67 |
</locationevent_id> |
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| 54 | 68 |
<aggregateoccurrence> |
| 55 | 69 |
<plantobservation_id> |
| 56 | 70 |
<plantobservation> |
| inputs/CTFS/maps/VegX.organisms.csv | ||
|---|---|---|
| 1 | 1 |
CTFS[VegX]:/*s/individualOrganismObservation,VegX:/*s/individualOrganismObservation,Comments |
| 2 |
/*ID->/*s/plotObservation/plotUniqueIdentifierID->/*s/plot[plotUniqueIdentifier]/plotName,/*ID->/*s/plotObservation:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/*UniqueIdentifierID->/*s/plot/plotName, |
|
| 3 |
/*ID->/*s/plotObservation/plotUniqueIdentifierID->/*s/plot[plotUniqueIdentifier]/plotUniqueIdentifier,/*ID->/*s/plotObservation:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier, |
|
| 2 | 4 |
/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/*/relatedPlot[plotRelationship=Quadrat]/relatedPlotID,, |
| 3 | 5 |
/*ID->/*s/plotObservation/simpleUserdefined[name=CensusNumber]/value,/simpleUserdefined[name=censusNo]/value, |
| 4 | 6 |
/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank=Species])/tcs:Name,"/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=sp])/tcs:Name", |
| inputs/CTFS/maps/VegX.organisms.full.csv | ||
|---|---|---|
| 89 | 89 |
/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier,/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier |
| 90 | 90 |
/*ID->/*s/plotObservation/simpleUserdefined[name=precipitation]/value,/*ID->/*s/plotObservation/simpleUserdefined[name=precipitation]/value |
| 91 | 91 |
/*ID->/*s/plotObservation/temperature,/*ID->/*s/plotObservation/temperature |
| 92 |
/*ID->/*s/plotObservation/plotUniqueIdentifierID->/*s/plot[plotUniqueIdentifier]/plotName,/*ID->/*s/plotObservation:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/*UniqueIdentifierID->/*s/plot/plotName, |
|
| 92 | 93 |
/*ID->/*s/plotObservation:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/*UniqueIdentifierID->/*s/plot/plotName,/*ID->/*s/plotObservation:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/*UniqueIdentifierID->/*s/plot/plotName |
| 94 |
/*ID->/*s/plotObservation/plotUniqueIdentifierID->/*s/plot[plotUniqueIdentifier]/plotUniqueIdentifier,/*ID->/*s/plotObservation:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier, |
|
| 93 | 95 |
/*ID->/*s/plotObservation:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier,/*ID->/*s/plotObservation:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier |
| 94 | 96 |
/diameterBaseDistance[baseDistance/value=0]/diameter,/diameterBaseDistance[baseDistance/value=0]/diameter |
| 95 | 97 |
/diameterBaseDistance[baseDistance/value=1.37]/diameter,/diameterBaseDistance[baseDistance/value=1.37]/diameter |
| inputs/CTFS/maps/VegBIEN.organisms.csv | ||
|---|---|---|
| 45 | 45 |
/*ID->/*s/plotObservation/temperature,/*_id/locationevent/temperature, |
| 46 | 46 |
/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/maximumDepthInMeters,"/*_id/locationevent/waterdepth/max/_units:[default=m,to=m,to=]/value", |
| 47 | 47 |
/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/minimumDepthInMeters,"/*_id/locationevent/waterdepth/min/_units:[default=m,to=m,to=]/value", |
| 48 |
/*ID->/*s/plotObservation/plotUniqueIdentifierID->/*s/plot[plotUniqueIdentifier]/plotName,/*_id/locationevent:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/authorlocationcode, |
|
| 48 | 49 |
/*ID->/*s/plotObservation:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/*UniqueIdentifierID->/*s/plot/plotName,/*_id/locationevent:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/authorlocationcode, |
| 49 | 50 |
/*ID->/*s/plotObservation/partyWithRole/*ID->/parties/party/organizationName,/*_id/locationevent:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1, |
| 51 |
/*ID->/*s/plotObservation/plotUniqueIdentifierID->/*s/plot[plotUniqueIdentifier]/plotUniqueIdentifier,/*_id/locationevent:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/sourceaccessioncode, |
|
| 50 | 52 |
/*ID->/*s/plotObservation:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier,/*_id/locationevent:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/sourceaccessioncode, |
| 51 | 53 |
/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/voucher,"/_if:[cond/_eq:[left=$../../../_ignore/voucherType,right=direct]]/{then/specimenreplicate,else/voucher/*_id/specimenreplicate:[*_id/taxonoccurrence]}/:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/catalognumber_dwc",
|
| 52 | 54 |
/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/partyWithRole/*ID->/parties/party/organizationName,"/_if:[cond/_eq:[left=$../../../_ignore/voucherType,right=direct]]/{then/specimenreplicate,else/voucher/*_id/specimenreplicate:[*_id/taxonoccurrence]}/:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1",
|
Also available in: Unified diff
inputs/CTFS/maps/VegX.organisms.csv: Connected plot to plotObservation by using new support for backward (child-to-parent) pointers whose target is a text element containing an ID