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1
# Database access
2

    
3
import copy
4
import operator
5
import re
6
import warnings
7

    
8
import exc
9
import dicts
10
import iters
11
import lists
12
from Proxy import Proxy
13
import rand
14
import sql_gen
15
import strings
16
import util
17

    
18
##### Exceptions
19

    
20
def get_cur_query(cur, input_query=None, input_params=None):
21
    raw_query = None
22
    if hasattr(cur, 'query'): raw_query = cur.query
23
    elif hasattr(cur, '_last_executed'): raw_query = cur._last_executed
24
    
25
    if raw_query != None: return raw_query
26
    else: return '[input] '+strings.ustr(input_query)+' % '+repr(input_params)
27

    
28
def _add_cursor_info(e, *args, **kw_args):
29
    '''For params, see get_cur_query()'''
30
    exc.add_msg(e, 'query: '+str(get_cur_query(*args, **kw_args)))
31

    
32
class DbException(exc.ExceptionWithCause):
33
    def __init__(self, msg, cause=None, cur=None):
34
        exc.ExceptionWithCause.__init__(self, msg, cause, cause_newline=True)
35
        if cur != None: _add_cursor_info(self, cur)
36

    
37
class ExceptionWithName(DbException):
38
    def __init__(self, name, cause=None):
39
        DbException.__init__(self, 'for name: '+str(name), cause)
40
        self.name = name
41

    
42
class ExceptionWithNameValue(DbException):
43
    def __init__(self, name, value, cause=None):
44
        DbException.__init__(self,
45
            'for name: '+str(name)+'; value: '+repr(value), cause)
46
        self.name = name
47
        self.value = value
48

    
49
class ConstraintException(DbException):
50
    def __init__(self, name, cols, cause=None):
51
        DbException.__init__(self, 'Violated '+name+ ' constraint on columns: '
52
            +(', '.join(cols)), cause)
53
        self.name = name
54
        self.cols = cols
55

    
56
class NameException(DbException): pass
57

    
58
class DuplicateKeyException(ConstraintException): pass
59

    
60
class NullValueException(ConstraintException): pass
61

    
62
class FunctionValueException(ExceptionWithNameValue): pass
63

    
64
class DuplicateTableException(ExceptionWithName): pass
65

    
66
class DuplicateFunctionException(ExceptionWithName): pass
67

    
68
class EmptyRowException(DbException): pass
69

    
70
##### Warnings
71

    
72
class DbWarning(UserWarning): pass
73

    
74
##### Result retrieval
75

    
76
def col_names(cur): return (col[0] for col in cur.description)
77

    
78
def rows(cur): return iter(lambda: cur.fetchone(), None)
79

    
80
def consume_rows(cur):
81
    '''Used to fetch all rows so result will be cached'''
82
    iters.consume_iter(rows(cur))
83

    
84
def next_row(cur): return rows(cur).next()
85

    
86
def row(cur):
87
    row_ = next_row(cur)
88
    consume_rows(cur)
89
    return row_
90

    
91
def next_value(cur): return next_row(cur)[0]
92

    
93
def value(cur): return row(cur)[0]
94

    
95
def values(cur): return iters.func_iter(lambda: next_value(cur))
96

    
97
def value_or_none(cur):
98
    try: return value(cur)
99
    except StopIteration: return None
100

    
101
##### Input validation
102

    
103
def clean_name(name): return re.sub(r'\W', r'', name.replace('.', '_'))
104

    
105
def check_name(name):
106
    if re.search(r'\W', name) != None: raise NameException('Name "'+name
107
        +'" may contain only alphanumeric characters and _')
108

    
109
def esc_name_by_module(module, name, ignore_case=False):
110
    if module == 'psycopg2' or module == None:
111
        if ignore_case:
112
            # Don't enclose in quotes because this disables case-insensitivity
113
            check_name(name)
114
            return name
115
        else: quote = '"'
116
    elif module == 'MySQLdb': quote = '`'
117
    else: raise NotImplementedError("Can't escape name for "+module+' database')
118
    return quote + name.replace(quote, '') + quote
119

    
120
def esc_name_by_engine(engine, name, **kw_args):
121
    return esc_name_by_module(db_engines[engine][0], name, **kw_args)
122

    
123
def esc_name(db, name, **kw_args):
124
    return esc_name_by_module(util.root_module(db.db), name, **kw_args)
125

    
126
def qual_name(db, schema, table):
127
    def esc_name_(name): return esc_name(db, name)
128
    table = esc_name_(table)
129
    if schema != None: return esc_name_(schema)+'.'+table
130
    else: return table
131

    
132
##### Database connections
133

    
134
db_config_names = ['engine', 'host', 'user', 'password', 'database', 'schemas']
135

    
136
db_engines = {
137
    'MySQL': ('MySQLdb', {'password': 'passwd', 'database': 'db'}),
138
    'PostgreSQL': ('psycopg2', {}),
139
}
140

    
141
DatabaseErrors_set = set([DbException])
142
DatabaseErrors = tuple(DatabaseErrors_set)
143

    
144
def _add_module(module):
145
    DatabaseErrors_set.add(module.DatabaseError)
146
    global DatabaseErrors
147
    DatabaseErrors = tuple(DatabaseErrors_set)
148

    
149
def db_config_str(db_config):
150
    return db_config['engine']+' database '+db_config['database']
151

    
152
def _query_lookup(query, params): return (query, dicts.make_hashable(params))
153

    
154
log_debug_none = lambda msg: None
155

    
156
class DbConn:
157
    def __init__(self, db_config, serializable=True, autocommit=False,
158
        caching=True, log_debug=log_debug_none):
159
        self.db_config = db_config
160
        self.serializable = serializable
161
        self.autocommit = autocommit
162
        self.caching = caching
163
        self.log_debug = log_debug
164
        self.debug = log_debug != log_debug_none
165
        
166
        self.__db = None
167
        self.query_results = {}
168
        self._savepoint = 0
169
    
170
    def __getattr__(self, name):
171
        if name == '__dict__': raise Exception('getting __dict__')
172
        if name == 'db': return self._db()
173
        else: raise AttributeError()
174
    
175
    def __getstate__(self):
176
        state = copy.copy(self.__dict__) # shallow copy
177
        state['log_debug'] = None # don't pickle the debug callback
178
        state['_DbConn__db'] = None # don't pickle the connection
179
        return state
180
    
181
    def connected(self): return self.__db != None
182
    
183
    def _db(self):
184
        if self.__db == None:
185
            # Process db_config
186
            db_config = self.db_config.copy() # don't modify input!
187
            schemas = db_config.pop('schemas', None)
188
            module_name, mappings = db_engines[db_config.pop('engine')]
189
            module = __import__(module_name)
190
            _add_module(module)
191
            for orig, new in mappings.iteritems():
192
                try: util.rename_key(db_config, orig, new)
193
                except KeyError: pass
194
            
195
            # Connect
196
            self.__db = module.connect(**db_config)
197
            
198
            # Configure connection
199
            if self.serializable and not self.autocommit: run_raw_query(self,
200
                'SET TRANSACTION ISOLATION LEVEL SERIALIZABLE')
201
            if schemas != None:
202
                schemas_ = ''.join((esc_name(self, s)+', '
203
                    for s in schemas.split(',')))
204
                run_raw_query(self, "SELECT set_config('search_path', \
205
%s || current_setting('search_path'), false)", [schemas_])
206
        
207
        return self.__db
208
    
209
    class DbCursor(Proxy):
210
        def __init__(self, outer):
211
            Proxy.__init__(self, outer.db.cursor())
212
            self.outer = outer
213
            self.query_results = outer.query_results
214
            self.query_lookup = None
215
            self.result = []
216
        
217
        def execute(self, query, params=None):
218
            self._is_insert = query.upper().find('INSERT') >= 0
219
            self.query_lookup = _query_lookup(query, params)
220
            try:
221
                try:
222
                    return_value = self.inner.execute(query, params)
223
                    self.outer.do_autocommit()
224
                finally: self.query = get_cur_query(self.inner)
225
            except Exception, e:
226
                _add_cursor_info(e, self, query, params)
227
                self.result = e # cache the exception as the result
228
                self._cache_result()
229
                raise
230
            # Fetch all rows so result will be cached
231
            if self.rowcount == 0 and not self._is_insert: consume_rows(self)
232
            return return_value
233
        
234
        def fetchone(self):
235
            row = self.inner.fetchone()
236
            if row != None: self.result.append(row)
237
            # otherwise, fetched all rows
238
            else: self._cache_result()
239
            return row
240
        
241
        def _cache_result(self):
242
            # For inserts, only cache exceptions since inserts are not
243
            # idempotent, but an invalid insert will always be invalid
244
            if self.query_results != None and (not self._is_insert
245
                or isinstance(self.result, Exception)):
246
                
247
                assert self.query_lookup != None
248
                self.query_results[self.query_lookup] = self.CacheCursor(
249
                    util.dict_subset(dicts.AttrsDictView(self),
250
                    ['query', 'result', 'rowcount', 'description']))
251
        
252
        class CacheCursor:
253
            def __init__(self, cached_result): self.__dict__ = cached_result
254
            
255
            def execute(self, *args, **kw_args):
256
                if isinstance(self.result, Exception): raise self.result
257
                # otherwise, result is a rows list
258
                self.iter = iter(self.result)
259
            
260
            def fetchone(self):
261
                try: return self.iter.next()
262
                except StopIteration: return None
263
    
264
    def esc_value(self, value):
265
        module = util.root_module(self.db)
266
        if module == 'psycopg2': str_ = self.db.cursor().mogrify('%s', [value])
267
        elif module == 'MySQLdb':
268
            import _mysql
269
            str_ = _mysql.escape_string(value)
270
        else: raise NotImplementedError("Can't escape value for "+module
271
            +' database')
272
        return strings.to_unicode(str_)
273
    
274
    def esc_name(self, name): return esc_name(self, name) # calls global func
275
    
276
    def run_query(self, query, params=None, cacheable=False, log_level=2):
277
        '''Translates known DB errors to typed exceptions:
278
        See self.DbCursor.execute().'''
279
        assert query != None
280
        
281
        if not self.caching: cacheable = False
282
        used_cache = False
283
        try:
284
            # Get cursor
285
            if cacheable:
286
                query_lookup = _query_lookup(query, params)
287
                try:
288
                    cur = self.query_results[query_lookup]
289
                    used_cache = True
290
                except KeyError: cur = self.DbCursor(self)
291
            else: cur = self.db.cursor()
292
            
293
            # Run query
294
            cur.execute(query, params)
295
        finally:
296
            if self.debug: # only compute msg if needed
297
                if used_cache: cache_status = 'Cache hit'
298
                elif cacheable: cache_status = 'Cache miss'
299
                else: cache_status = 'Non-cacheable'
300
                self.log_debug(cache_status+': '+strings.one_line(
301
                    str(get_cur_query(cur, query, params))), log_level)
302
        
303
        return cur
304
    
305
    def is_cached(self, query, params=None):
306
        return _query_lookup(query, params) in self.query_results
307
    
308
    def with_savepoint(self, func):
309
        savepoint = 'level_'+str(self._savepoint)
310
        self.run_query('SAVEPOINT '+savepoint)
311
        self._savepoint += 1
312
        try: 
313
            try: return_val = func()
314
            finally:
315
                self._savepoint -= 1
316
                assert self._savepoint >= 0
317
        except:
318
            self.run_query('ROLLBACK TO SAVEPOINT '+savepoint)
319
            raise
320
        else:
321
            self.run_query('RELEASE SAVEPOINT '+savepoint)
322
            self.do_autocommit()
323
            return return_val
324
    
325
    def do_autocommit(self):
326
        '''Autocommits if outside savepoint'''
327
        assert self._savepoint >= 0
328
        if self.autocommit and self._savepoint == 0:
329
            self.log_debug('Autocommiting')
330
            self.db.commit()
331

    
332
connect = DbConn
333

    
334
##### Querying
335

    
336
def run_raw_query(db, *args, **kw_args):
337
    '''For params, see DbConn.run_query()'''
338
    return db.run_query(*args, **kw_args)
339

    
340
def mogrify(db, query, params):
341
    module = util.root_module(db.db)
342
    if module == 'psycopg2': return db.db.cursor().mogrify(query, params)
343
    else: raise NotImplementedError("Can't mogrify query for "+module+
344
        ' database')
345

    
346
##### Recoverable querying
347

    
348
def with_savepoint(db, func): return db.with_savepoint(func)
349

    
350
def run_query(db, query, params=None, recover=None, cacheable=False, **kw_args):
351
    '''For params, see run_raw_query()'''
352
    if recover == None: recover = False
353
    
354
    try:
355
        def run(): return run_raw_query(db, query, params, cacheable, **kw_args)
356
        if recover and not db.is_cached(query, params):
357
            return with_savepoint(db, run)
358
        else: return run() # don't need savepoint if cached
359
    except Exception, e:
360
        if not recover: raise # need savepoint to run index_cols()
361
        msg = exc.str_(e)
362
        
363
        match = re.search(r'duplicate key value violates unique constraint '
364
            r'"((_?[^\W_]+)_[^"]+?)"', msg)
365
        if match:
366
            constraint, table = match.groups()
367
            try: cols = index_cols(db, table, constraint)
368
            except NotImplementedError: raise e
369
            else: raise DuplicateKeyException(constraint, cols, e)
370
        
371
        match = re.search(r'null value in column "(\w+?)" violates not-null '
372
            r'constraint', msg)
373
        if match: raise NullValueException('NOT NULL', [match.group(1)], e)
374
        
375
        match = re.search(r'\b(?:invalid input (?:syntax|value)\b.*?'
376
            r'|date/time field value out of range): "(.+?)"\n'
377
            r'(?:(?s).*?)\bfunction "(\w+?)".*?\bat assignment', msg)
378
        if match:
379
            value, name = match.groups()
380
            raise FunctionValueException(name, strings.to_unicode(value), e)
381
        
382
        match = re.search(r'relation "(\w+?)" already exists', msg)
383
        if match: raise DuplicateTableException(match.group(1), e)
384
        
385
        match = re.search(r'function "(\w+?)" already exists', msg)
386
        if match: raise DuplicateFunctionException(match.group(1), e)
387
        
388
        raise # no specific exception raised
389

    
390
##### Basic queries
391

    
392
def next_version(name):
393
    '''Prepends the version # so it won't be removed if the name is truncated'''
394
    version = 1 # first existing name was version 0
395
    match = re.match(r'^v(\d+)_(.*)$', name)
396
    if match:
397
        version = int(match.group(1))+1
398
        name = match.group(2)
399
    return 'v'+str(version)+'_'+name
400

    
401
def run_query_into(db, query, params, into=None, *args, **kw_args):
402
    '''Outputs a query to a temp table.
403
    For params, see run_query().
404
    '''
405
    if into == None: return run_query(db, query, params, *args, **kw_args)
406
    else: # place rows in temp table
407
        assert isinstance(into, sql_gen.Table)
408
        
409
        kw_args['recover'] = True
410
        
411
        temp = not db.debug # tables are created as permanent in debug mode
412
        # "temporary tables cannot specify a schema name", so remove schema
413
        if temp: into.schema = None
414
        
415
        while True:
416
            try:
417
                create_query = 'CREATE'
418
                if temp: create_query += ' TEMP'
419
                create_query += ' TABLE '+into.to_str(db)+' AS '+query
420
                
421
                return run_query(db, create_query, params, *args, **kw_args)
422
                    # CREATE TABLE AS sets rowcount to # rows in query
423
            except DuplicateTableException, e:
424
                into.name = next_version(into.name)
425
                # try again with next version of name
426

    
427
order_by_pkey = object() # tells mk_select() to order by the pkey
428

    
429
distinct_on_all = object() # tells mk_select() to SELECT DISTINCT ON all columns
430

    
431
def mk_select(db, tables, fields=None, conds=None, distinct_on=[], limit=None,
432
    start=None, order_by=order_by_pkey, default_table=None):
433
    '''
434
    @param tables The single table to select from, or a list of tables to join
435
        together, with tables after the first being sql_gen.Join objects
436
    @param fields Use None to select all fields in the table
437
    @param conds WHERE conditions: [(compare_left_side, compare_right_side),...]
438
        * container can be any iterable type
439
        * compare_left_side: sql_gen.Code|str (for col name)
440
        * compare_right_side: sql_gen.ValueCond|literal value
441
    @param distinct_on The columns to SELECT DISTINCT ON, or distinct_on_all to
442
        use all columns
443
    @return tuple(query, params)
444
    '''
445
    # Parse tables param
446
    if not lists.is_seq(tables): tables = [tables]
447
    tables = list(tables) # don't modify input! (list() copies input)
448
    table0 = sql_gen.as_Table(tables.pop(0)) # first table is separate
449
    
450
    # Parse other params
451
    if conds == None: conds = []
452
    elif isinstance(conds, dict): conds = conds.items()
453
    conds = list(conds) # don't modify input! (list() copies input)
454
    assert limit == None or type(limit) == int
455
    assert start == None or type(start) == int
456
    if order_by is order_by_pkey:
457
        if distinct_on != []: order_by = None
458
        else: order_by = pkey(db, table0, recover=True)
459
    
460
    query = 'SELECT'
461
    
462
    def parse_col(col): return sql_gen.as_Col(col, default_table).to_str(db)
463
    
464
    # DISTINCT ON columns
465
    if distinct_on != []:
466
        query += ' DISTINCT'
467
        if distinct_on is not distinct_on_all:
468
            query += ' ON ('+(', '.join(map(parse_col, distinct_on)))+')'
469
    
470
    # Columns
471
    query += ' '
472
    if fields == None: query += '*'
473
    else: query += ', '.join(map(parse_col, fields))
474
    
475
    # Main table
476
    query += ' FROM '+table0.to_str(db)
477
    
478
    # Add joins
479
    left_table = table0
480
    for join_ in tables:
481
        table = join_.table
482
        
483
        # Parse special values
484
        if join_.type_ is sql_gen.filter_out: # filter no match
485
            conds.append((sql_gen.Col(table_not_null_col(db, table), table),
486
                None))
487
        
488
        query += ' '+join_.to_str(db, left_table)
489
        
490
        left_table = table
491
    
492
    missing = True
493
    if conds != []:
494
        query += ' WHERE '+(' AND '.join(('('+sql_gen.ColValueCond(l, r)
495
            .to_str(db)+')' for l, r in conds)))
496
        missing = False
497
    if order_by != None:
498
        query += ' ORDER BY '+sql_gen.as_Col(order_by, table0).to_str(db)
499
    if limit != None: query += ' LIMIT '+str(limit); missing = False
500
    if start != None:
501
        if start != 0: query += ' OFFSET '+str(start)
502
        missing = False
503
    if missing: warnings.warn(DbWarning(
504
        'SELECT statement missing a WHERE, LIMIT, or OFFSET clause: '+query))
505
    
506
    return (query, [])
507

    
508
def select(db, *args, **kw_args):
509
    '''For params, see mk_select() and run_query()'''
510
    recover = kw_args.pop('recover', None)
511
    cacheable = kw_args.pop('cacheable', True)
512
    
513
    query, params = mk_select(db, *args, **kw_args)
514
    return run_query(db, query, params, recover, cacheable)
515

    
516
def mk_insert_select(db, table, cols=None, select_query=None, params=None,
517
    returning=None, embeddable=False):
518
    '''
519
    @param returning str|None An inserted column (such as pkey) to return
520
    @param embeddable Whether the query should be embeddable as a nested SELECT.
521
        Warning: If you set this and cacheable=True when the query is run, the
522
        query will be fully cached, not just if it raises an exception.
523
    '''
524
    table = sql_gen.as_Table(table)
525
    if cols == []: cols = None # no cols (all defaults) = unknown col names
526
    if cols != None: cols = [sql_gen.as_Col(v).to_str(db) for v in cols]
527
    if select_query == None: select_query = 'DEFAULT VALUES'
528
    if returning != None: returning = sql_gen.as_Col(returning, table)
529
    
530
    # Build query
531
    query = 'INSERT INTO '+table.to_str(db)
532
    if cols != None: query += ' ('+', '.join(cols)+')'
533
    query += ' '+select_query
534
    
535
    if returning != None:
536
        returning_name = copy.copy(returning)
537
        returning_name.table = None
538
        returning_name = returning_name.to_str(db)
539
        query += ' RETURNING '+returning_name
540
    
541
    if embeddable:
542
        assert returning != None
543
        
544
        # Create function
545
        function_name = '_'.join(['insert', table.name] + cols)
546
        return_type = 'SETOF '+returning.to_str(db)+'%TYPE'
547
        while True:
548
            try:
549
                func_schema = None
550
                if not db.debug: func_schema = 'pg_temp'
551
                function = sql_gen.Table(function_name, func_schema).to_str(db)
552
                
553
                function_query = '''\
554
CREATE FUNCTION '''+function+'''() RETURNS '''+return_type+'''
555
    LANGUAGE sql
556
    AS $$'''+mogrify(db, query, params)+''';$$;
557
'''
558
                run_query(db, function_query, recover=True, cacheable=True)
559
                break # this version was successful
560
            except DuplicateFunctionException, e:
561
                function_name = next_version(function_name)
562
                # try again with next version of name
563
        
564
        # Return query that uses function
565
        func_table = sql_gen.NamedTable('f', sql_gen.CustomCode(function+'()'),
566
            [returning_name]) # AS clause requires function alias
567
        return mk_select(db, func_table, start=0, order_by=None)
568
    
569
    return (query, params)
570

    
571
def insert_select(db, *args, **kw_args):
572
    '''For params, see mk_insert_select() and run_query_into()
573
    @param into sql_gen.Table with suggested name of temp table to put RETURNING
574
        values in
575
    '''
576
    into = kw_args.pop('into', None)
577
    if into != None: kw_args['embeddable'] = True
578
    recover = kw_args.pop('recover', None)
579
    cacheable = kw_args.pop('cacheable', True)
580
    
581
    query, params = mk_insert_select(db, *args, **kw_args)
582
    return run_query_into(db, query, params, into, recover=recover,
583
        cacheable=cacheable)
584

    
585
default = object() # tells insert() to use the default value for a column
586

    
587
def insert(db, table, row, *args, **kw_args):
588
    '''For params, see insert_select()'''
589
    if lists.is_seq(row): cols = None
590
    else:
591
        cols = row.keys()
592
        row = row.values()
593
    row = list(row) # ensure that "!= []" works
594
    
595
    # Check for special values
596
    labels = []
597
    values = []
598
    for value in row:
599
        if value is default: labels.append('DEFAULT')
600
        else:
601
            labels.append('%s')
602
            values.append(value)
603
    
604
    # Build query
605
    if values != []: query = ' VALUES ('+(', '.join(labels))+')'
606
    else: query = None
607
    
608
    return insert_select(db, table, cols, query, values, *args, **kw_args)
609

    
610
def mk_update(db, table, changes=None, cond=None):
611
    '''
612
    @param changes [(col, new_value),...]
613
        * container can be any iterable type
614
        * col: sql_gen.Code|str (for col name)
615
        * new_value: sql_gen.Code|literal value
616
    @param cond sql_gen.Code WHERE condition. e.g. use sql_gen.*Cond objects.
617
    @return str query
618
    '''
619
    query = 'UPDATE '+sql_gen.as_Table(table).to_str(db)+'\nSET\n'
620
    query += ',\n'.join((sql_gen.to_name_only_col(col, table).to_str(db)+' = '
621
        +sql_gen.as_Value(new_value).to_str(db) for col, new_value in changes))
622
    if cond != None: query += ' WHERE '+cond.to_str(db)
623
    
624
    return query
625

    
626
def update(db, *args, **kw_args):
627
    '''For params, see mk_update() and run_query()'''
628
    recover = kw_args.pop('recover', None)
629
    
630
    return run_query(db, mk_update(db, *args, **kw_args), [], recover)
631

    
632
def last_insert_id(db):
633
    module = util.root_module(db.db)
634
    if module == 'psycopg2': return value(run_query(db, 'SELECT lastval()'))
635
    elif module == 'MySQLdb': return db.insert_id()
636
    else: return None
637

    
638
def truncate(db, table, schema='public'):
639
    return run_query(db, 'TRUNCATE '+qual_name(db, schema, table)+' CASCADE')
640

    
641
def mk_flatten_mapping(db, into, cols, preserve=[], as_items=False):
642
    '''Creates a mapping from original column names (which may have collisions)
643
    to names that will be distinct among the columns' tables.
644
    This is meant to be used for several tables that are being joined together.
645
    @param cols The columns to combine. Duplicates will be removed.
646
    @param into The table for the new columns.
647
    @param preserve [sql_gen.Col...] Columns not to rename. Note that these
648
        columns will be included in the mapping even if they are not in cols.
649
        The tables of the provided Col objects will be changed to into, so make
650
        copies of them if you want to keep the original tables.
651
    @param as_items Whether to return a list of dict items instead of a dict
652
    @return dict(orig_col=new_col, ...)
653
        * orig_col: sql_gen.Col(orig_col_name, orig_table)
654
        * new_col: sql_gen.Col(orig_col_name, into)
655
        * All mappings use the into table so its name can easily be
656
          changed for all columns at once
657
    '''
658
    cols = lists.uniqify(cols)
659
    
660
    items = []
661
    for col in preserve:
662
        orig_col = copy.copy(col)
663
        col.table = into
664
        items.append((orig_col, col))
665
    preserve = set(preserve)
666
    for col in cols:
667
        if col not in preserve:
668
            items.append((col, sql_gen.Col(clean_name(str(col)), into)))
669
    
670
    if not as_items: items = dict(items)
671
    return items
672

    
673
def flatten(db, into, joins, cols, limit=None, start=None, **kw_args):
674
    '''For params, see mk_flatten_mapping()
675
    @return See return value of mk_flatten_mapping()
676
    '''
677
    items = mk_flatten_mapping(db, into, cols, as_items=True, **kw_args)
678
    cols = [sql_gen.NamedCol(new.name, old) for old, new in items]
679
    run_query_into(db, *mk_select(db, joins, cols, limit=limit, start=start),
680
        into=into)
681
    return dict(items)
682

    
683
##### Database structure queries
684

    
685
def table_row_count(db, table, recover=None):
686
    return value(run_query(db, *mk_select(db, table, [sql_gen.row_count],
687
        order_by=None, start=0), recover=recover))
688

    
689
def table_cols(db, table, recover=None):
690
    return list(col_names(select(db, table, limit=0, order_by=None,
691
        recover=recover)))
692

    
693
def pkey(db, table, recover=None):
694
    '''Assumed to be first column in table'''
695
    return table_cols(db, table, recover)[0]
696

    
697
not_null_col = 'not_null'
698

    
699
def table_not_null_col(db, table, recover=None):
700
    '''Name assumed to be the value of not_null_col. If not found, uses pkey.'''
701
    if not_null_col in table_cols(db, table, recover): return not_null_col
702
    else: return pkey(db, table, recover)
703

    
704
def index_cols(db, table, index):
705
    '''Can also use this for UNIQUE constraints, because a UNIQUE index is
706
    automatically created. When you don't know whether something is a UNIQUE
707
    constraint or a UNIQUE index, use this function.'''
708
    module = util.root_module(db.db)
709
    if module == 'psycopg2':
710
        return list(values(run_query(db, '''\
711
SELECT attname
712
FROM
713
(
714
        SELECT attnum, attname
715
        FROM pg_index
716
        JOIN pg_class index ON index.oid = indexrelid
717
        JOIN pg_class table_ ON table_.oid = indrelid
718
        JOIN pg_attribute ON attrelid = indrelid AND attnum = ANY (indkey)
719
        WHERE
720
            table_.relname = %(table)s
721
            AND index.relname = %(index)s
722
    UNION
723
        SELECT attnum, attname
724
        FROM
725
        (
726
            SELECT
727
                indrelid
728
                , (regexp_matches(indexprs, E':varattno (\\\\d+)', 'g'))[1]::int
729
                    AS indkey
730
            FROM pg_index
731
            JOIN pg_class index ON index.oid = indexrelid
732
            JOIN pg_class table_ ON table_.oid = indrelid
733
            WHERE
734
                table_.relname = %(table)s
735
                AND index.relname = %(index)s
736
        ) s
737
        JOIN pg_attribute ON attrelid = indrelid AND attnum = indkey
738
) s
739
ORDER BY attnum
740
''',
741
            {'table': table, 'index': index}, cacheable=True)))
742
    else: raise NotImplementedError("Can't list index columns for "+module+
743
        ' database')
744

    
745
def constraint_cols(db, table, constraint):
746
    module = util.root_module(db.db)
747
    if module == 'psycopg2':
748
        return list(values(run_query(db, '''\
749
SELECT attname
750
FROM pg_constraint
751
JOIN pg_class ON pg_class.oid = conrelid
752
JOIN pg_attribute ON attrelid = conrelid AND attnum = ANY (conkey)
753
WHERE
754
    relname = %(table)s
755
    AND conname = %(constraint)s
756
ORDER BY attnum
757
''',
758
            {'table': table, 'constraint': constraint})))
759
    else: raise NotImplementedError("Can't list constraint columns for "+module+
760
        ' database')
761

    
762
row_num_col = '_row_num'
763

    
764
def index_col(db, col):
765
    '''Adds an index on a column if it doesn't already exist.'''
766
    assert sql_gen.is_table_col(col)
767
    
768
    table = col.table
769
    index = sql_gen.as_Table(clean_name(str(col)))
770
    col = sql_gen.to_name_only_col(col)
771
    try: run_query(db, 'CREATE INDEX '+index.to_str(db)+' ON '+table.to_str(db)
772
        +' ('+col.to_str(db)+')', recover=True, cacheable=True)
773
    except DuplicateTableException: pass # index already existed
774

    
775
def index_pkey(db, table, recover=None):
776
    '''Makes the first column in a table the primary key.
777
    @pre The table must not already have a primary key.
778
    '''
779
    table = sql_gen.as_Table(table)
780
    
781
    index = sql_gen.as_Table(table.name+'_pkey')
782
    col = sql_gen.to_name_only_col(pkey(db, table, recover))
783
    run_query(db, 'ALTER TABLE '+table.to_str(db)+' ADD CONSTRAINT '
784
        +index.to_str(db)+' PRIMARY KEY('+col.to_str(db)+')', recover=recover)
785

    
786
def add_row_num(db, table):
787
    '''Adds a row number column to a table. Its name is in row_num_col. It will
788
    be the primary key.'''
789
    table = sql_gen.as_Table(table).to_str(db)
790
    run_query(db, 'ALTER TABLE '+table+' ADD COLUMN '+row_num_col
791
        +' serial NOT NULL PRIMARY KEY')
792

    
793
def tables(db, schema='public', table_like='%'):
794
    module = util.root_module(db.db)
795
    params = {'schema': schema, 'table_like': table_like}
796
    if module == 'psycopg2':
797
        return values(run_query(db, '''\
798
SELECT tablename
799
FROM pg_tables
800
WHERE
801
    schemaname = %(schema)s
802
    AND tablename LIKE %(table_like)s
803
ORDER BY tablename
804
''',
805
            params, cacheable=True))
806
    elif module == 'MySQLdb':
807
        return values(run_query(db, 'SHOW TABLES LIKE %(table_like)s', params,
808
            cacheable=True))
809
    else: raise NotImplementedError("Can't list tables for "+module+' database')
810

    
811
##### Database management
812

    
813
def empty_db(db, schema='public', **kw_args):
814
    '''For kw_args, see tables()'''
815
    for table in tables(db, schema, **kw_args): truncate(db, table, schema)
816

    
817
##### Heuristic queries
818

    
819
def put(db, table, row, pkey_=None, row_ct_ref=None):
820
    '''Recovers from errors.
821
    Only works under PostgreSQL (uses INSERT RETURNING).
822
    '''
823
    if pkey_ == None: pkey_ = pkey(db, table, recover=True)
824
    
825
    try:
826
        cur = insert(db, table, row, pkey_, recover=True)
827
        if row_ct_ref != None and cur.rowcount >= 0:
828
            row_ct_ref[0] += cur.rowcount
829
        return value(cur)
830
    except DuplicateKeyException, e:
831
        return value(select(db, table, [pkey_],
832
            util.dict_subset_right_join(row, e.cols), recover=True))
833

    
834
def get(db, table, row, pkey, row_ct_ref=None, create=False):
835
    '''Recovers from errors'''
836
    try: return value(select(db, table, [pkey], row, limit=1, recover=True))
837
    except StopIteration:
838
        if not create: raise
839
        return put(db, table, row, pkey, row_ct_ref) # insert new row
840

    
841
def put_table(db, out_table, in_tables, mapping, row_ct_ref=None):
842
    '''Recovers from errors.
843
    Only works under PostgreSQL (uses INSERT RETURNING).
844
    @param in_tables The main input table to select from, followed by a list of
845
        tables to join with it using the main input table's pkey
846
    @param mapping dict(out_table_col=in_table_col, ...)
847
        * out_table_col: sql_gen.Col|str
848
        * in_table_col: sql_gen.Col Wrap literal values in a sql_gen.NamedCol
849
    @return sql_gen.Col Where the output pkeys are made available
850
    '''
851
    out_table = sql_gen.as_Table(out_table)
852
    for in_table_col in mapping.itervalues():
853
        assert isinstance(in_table_col, sql_gen.Col)
854
    
855
    temp_prefix = out_table.name
856
    pkeys = sql_gen.Table(temp_prefix+'_pkeys')
857
    
858
    # Create input joins from list of input tables
859
    in_tables_ = in_tables[:] # don't modify input!
860
    in_tables0 = in_tables_.pop(0) # first table is separate
861
    in_pkey = pkey(db, in_tables0, recover=True)
862
    in_pkey_col = sql_gen.as_Col(in_pkey, in_tables0)
863
    input_joins = [in_tables0]+[sql_gen.Join(v, {in_pkey: sql_gen.join_same})
864
        for v in in_tables_]
865
    
866
    db.log_debug('Joining together input tables')
867
    # Place in new table for speed and so don't modify input if values edited
868
    in_table = sql_gen.Table(temp_prefix+'_in')
869
    flatten_cols = filter(sql_gen.is_table_col, mapping.values())
870
    mapping = dicts.join(mapping, flatten(db, in_table, input_joins,
871
        flatten_cols, preserve=[in_pkey_col], start=0))
872
    input_joins = [in_table]
873
    
874
    out_pkey = pkey(db, out_table, recover=True)
875
    out_pkey_col = sql_gen.as_Col(out_pkey, out_table)
876
    
877
    pkeys_names = [in_pkey, out_pkey]
878
    pkeys_cols = [in_pkey_col, out_pkey_col]
879
    
880
    pkeys_table_exists_ref = [False]
881
    def insert_into_pkeys(joins, cols):
882
        query, params = mk_select(db, joins, cols, order_by=None, start=0)
883
        if pkeys_table_exists_ref[0]:
884
            insert_select(db, pkeys, pkeys_names, query, params)
885
        else:
886
            run_query_into(db, query, params, into=pkeys)
887
            pkeys_table_exists_ref[0] = True
888
    
889
    limit_ref = [None]
890
    conds = set()
891
    distinct_on = []
892
    def mk_main_select(joins, cols):
893
        return mk_select(db, joins, cols, conds, distinct_on,
894
            limit=limit_ref[0], start=0)
895
    
896
    def log_exc(e):
897
        db.log_debug('Caught exception: '+exc.str_(e, first_line_only=True))
898
    def remove_all_rows(msg):
899
        warnings.warn(DbWarning(msg))
900
        db.log_debug(msg.partition('\n')[0])
901
        db.log_debug('Returning NULL for all rows')
902
        limit_ref[0] = 0 # just create an empty pkeys table
903
    def ignore(in_col, value):
904
        in_col_str = str(in_col)
905
        db.log_debug('Adding index on '+in_col_str+' to enable fast filtering')
906
        index_col(db, in_col)
907
        db.log_debug('Ignoring rows with '+in_col_str+' = '+repr(value))
908
    def remove_rows(in_col, value):
909
        ignore(in_col, value)
910
        cond = (in_col, sql_gen.CompareCond(value, '!='))
911
        assert cond not in conds # avoid infinite loops
912
        conds.add(cond)
913
    def invalid2null(in_col, value):
914
        ignore(in_col, value)
915
        update(db, in_table, [(in_col, None)],
916
            sql_gen.ColValueCond(in_col, value))
917
    
918
    # Do inserts and selects
919
    join_cols = {}
920
    insert_out_pkeys = sql_gen.Table(temp_prefix+'_insert_out_pkeys')
921
    insert_in_pkeys = sql_gen.Table(temp_prefix+'_insert_in_pkeys')
922
    while True:
923
        has_joins = join_cols != {}
924
        
925
        # Prepare to insert new rows
926
        insert_joins = input_joins[:] # don't modify original!
927
        insert_args = dict(recover=True, cacheable=False)
928
        if has_joins:
929
            distinct_on = [v.to_Col() for v in join_cols.values()]
930
            insert_joins.append(sql_gen.Join(out_table, join_cols,
931
                sql_gen.filter_out))
932
        else:
933
            insert_args.update(dict(returning=out_pkey, into=insert_out_pkeys))
934
        
935
        db.log_debug('Inserting new rows')
936
        try:
937
            cur = insert_select(db, out_table, mapping.keys(),
938
                *mk_main_select(insert_joins, mapping.values()), **insert_args)
939
            break # insert successful
940
        except DuplicateKeyException, e:
941
            log_exc(e)
942
            
943
            old_join_cols = join_cols.copy()
944
            join_cols.update(util.dict_subset(mapping, e.cols))
945
            db.log_debug('Ignoring existing rows, comparing on '+str(join_cols))
946
            assert join_cols != old_join_cols # avoid infinite loops
947
        except NullValueException, e:
948
            log_exc(e)
949
            
950
            out_col, = e.cols
951
            try: in_col = mapping[out_col]
952
            except KeyError:
953
                remove_all_rows('Missing mapping for NOT NULL '+out_col)
954
            else: remove_rows(in_col, None)
955
        except FunctionValueException, e:
956
            log_exc(e)
957
            
958
            assert e.name == out_table.name
959
            out_col = 'value' # assume function param was named "value"
960
            invalid2null(mapping[out_col], e.value)
961
        except DatabaseErrors, e:
962
            log_exc(e)
963
            
964
            remove_all_rows('No handler for exception: '+exc.str_(e))
965
        # after exception handled, rerun loop with additional constraints
966
    
967
    if row_ct_ref != None and cur.rowcount >= 0:
968
        row_ct_ref[0] += cur.rowcount
969
    
970
    if has_joins:
971
        select_joins = input_joins+[sql_gen.Join(out_table, join_cols)]
972
        db.log_debug('Getting output pkeys of existing/inserted rows')
973
        insert_into_pkeys(select_joins, pkeys_cols)
974
    else:
975
        add_row_num(db, insert_out_pkeys) # for joining with input pkeys
976
        
977
        db.log_debug('Getting input pkeys for rows in insert')
978
        run_query_into(db, *mk_main_select(input_joins, [in_pkey]),
979
            into=insert_in_pkeys)
980
        add_row_num(db, insert_in_pkeys) # for joining with output pkeys
981
        
982
        assert table_row_count(db, insert_out_pkeys) == table_row_count(db,
983
            insert_in_pkeys)
984
        
985
        db.log_debug('Joining together output and input pkeys')
986
        pkey_joins = [insert_in_pkeys, sql_gen.Join(insert_out_pkeys,
987
            {row_num_col: sql_gen.join_same_not_null})]
988
        insert_into_pkeys(pkey_joins, pkeys_names)
989
    
990
    db.log_debug('Adding pkey on returned pkeys table to enable fast joins')
991
    index_pkey(db, pkeys)
992
    
993
    db.log_debug("Setting missing rows' pkeys to NULL")
994
    missing_rows_joins = input_joins+[sql_gen.Join(pkeys,
995
        {in_pkey: sql_gen.join_same_not_null}, sql_gen.filter_out)]
996
        # must use join_same_not_null or query will take forever
997
    insert_into_pkeys(missing_rows_joins,
998
        [in_pkey_col, sql_gen.NamedCol(out_pkey, None)])
999
    
1000
    assert table_row_count(db, pkeys) == table_row_count(db, in_table)
1001
    
1002
    return sql_gen.Col(out_pkey, pkeys)
1003

    
1004
##### Data cleanup
1005

    
1006
def cleanup_table(db, table, cols):
1007
    def esc_name_(name): return esc_name(db, name)
1008
    
1009
    table = sql_gen.as_Table(table).to_str(db)
1010
    cols = map(esc_name_, cols)
1011
    
1012
    run_query(db, 'UPDATE '+table+' SET\n'+(',\n'.join(('\n'+col
1013
        +' = nullif(nullif(trim(both from '+col+"), %(null0)s), %(null1)s)"
1014
            for col in cols))),
1015
        dict(null0='', null1=r'\N'))
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