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1 11 aaronmk
# Database access
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import copy
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import operator
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import re
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import warnings
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import exc
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import dicts
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import iters
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import lists
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from Proxy import Proxy
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import rand
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import sql_gen
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import strings
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import util
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##### Exceptions
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def get_cur_query(cur, input_query=None, input_params=None):
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    raw_query = None
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    if hasattr(cur, 'query'): raw_query = cur.query
23
    elif hasattr(cur, '_last_executed'): raw_query = cur._last_executed
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25
    if raw_query != None: return raw_query
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    else: return '[input] '+strings.ustr(input_query)+' % '+repr(input_params)
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def _add_cursor_info(e, *args, **kw_args):
29
    '''For params, see get_cur_query()'''
30
    exc.add_msg(e, 'query: '+str(get_cur_query(*args, **kw_args)))
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class DbException(exc.ExceptionWithCause):
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    def __init__(self, msg, cause=None, cur=None):
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        exc.ExceptionWithCause.__init__(self, msg, cause, cause_newline=True)
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        if cur != None: _add_cursor_info(self, cur)
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class ExceptionWithName(DbException):
38
    def __init__(self, name, cause=None):
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        DbException.__init__(self, 'for name: '+str(name), cause)
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        self.name = name
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class ExceptionWithNameValue(DbException):
43
    def __init__(self, name, value, cause=None):
44
        DbException.__init__(self,
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            'for name: '+str(name)+'; value: '+repr(value), cause)
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        self.name = name
47
        self.value = value
48
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class ConstraintException(DbException):
50
    def __init__(self, name, cols, cause=None):
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        DbException.__init__(self, 'Violated '+name+ ' constraint on columns: '
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            +(', '.join(cols)), cause)
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        self.name = name
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        self.cols = cols
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class NameException(DbException): pass
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class DuplicateKeyException(ConstraintException): pass
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class NullValueException(ConstraintException): pass
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class FunctionValueException(ExceptionWithNameValue): pass
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class DuplicateTableException(ExceptionWithName): pass
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class DuplicateFunctionException(ExceptionWithName): pass
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class EmptyRowException(DbException): pass
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##### Warnings
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72
class DbWarning(UserWarning): pass
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##### Result retrieval
75
76
def col_names(cur): return (col[0] for col in cur.description)
77
78
def rows(cur): return iter(lambda: cur.fetchone(), None)
79
80
def consume_rows(cur):
81
    '''Used to fetch all rows so result will be cached'''
82
    iters.consume_iter(rows(cur))
83
84
def next_row(cur): return rows(cur).next()
85
86
def row(cur):
87
    row_ = next_row(cur)
88
    consume_rows(cur)
89
    return row_
90
91
def next_value(cur): return next_row(cur)[0]
92
93
def value(cur): return row(cur)[0]
94
95
def values(cur): return iters.func_iter(lambda: next_value(cur))
96
97
def value_or_none(cur):
98
    try: return value(cur)
99
    except StopIteration: return None
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##### Input validation
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def clean_name(name): return re.sub(r'\W', r'', name.replace('.', '_'))
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def check_name(name):
106
    if re.search(r'\W', name) != None: raise NameException('Name "'+name
107
        +'" may contain only alphanumeric characters and _')
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def esc_name_by_module(module, name, ignore_case=False):
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    if module == 'psycopg2' or module == None:
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        if ignore_case:
112
            # Don't enclose in quotes because this disables case-insensitivity
113
            check_name(name)
114
            return name
115
        else: quote = '"'
116
    elif module == 'MySQLdb': quote = '`'
117
    else: raise NotImplementedError("Can't escape name for "+module+' database')
118
    return quote + name.replace(quote, '') + quote
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120
def esc_name_by_engine(engine, name, **kw_args):
121
    return esc_name_by_module(db_engines[engine][0], name, **kw_args)
122
123
def esc_name(db, name, **kw_args):
124
    return esc_name_by_module(util.root_module(db.db), name, **kw_args)
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126
def qual_name(db, schema, table):
127
    def esc_name_(name): return esc_name(db, name)
128
    table = esc_name_(table)
129
    if schema != None: return esc_name_(schema)+'.'+table
130
    else: return table
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##### Database connections
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db_config_names = ['engine', 'host', 'user', 'password', 'database', 'schemas']
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db_engines = {
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    'MySQL': ('MySQLdb', {'password': 'passwd', 'database': 'db'}),
138
    'PostgreSQL': ('psycopg2', {}),
139
}
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DatabaseErrors_set = set([DbException])
142
DatabaseErrors = tuple(DatabaseErrors_set)
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def _add_module(module):
145
    DatabaseErrors_set.add(module.DatabaseError)
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    global DatabaseErrors
147
    DatabaseErrors = tuple(DatabaseErrors_set)
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def db_config_str(db_config):
150
    return db_config['engine']+' database '+db_config['database']
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def _query_lookup(query, params): return (query, dicts.make_hashable(params))
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log_debug_none = lambda msg: None
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class DbConn:
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    def __init__(self, db_config, serializable=True, autocommit=False,
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        caching=True, log_debug=log_debug_none):
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        self.db_config = db_config
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        self.serializable = serializable
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        self.autocommit = autocommit
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        self.caching = caching
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        self.log_debug = log_debug
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        self.debug = log_debug != log_debug_none
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        self.__db = None
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        self.query_results = {}
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        self._savepoint = 0
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    def __getattr__(self, name):
171
        if name == '__dict__': raise Exception('getting __dict__')
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        if name == 'db': return self._db()
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        else: raise AttributeError()
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    def __getstate__(self):
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        state = copy.copy(self.__dict__) # shallow copy
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        state['log_debug'] = None # don't pickle the debug callback
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        state['_DbConn__db'] = None # don't pickle the connection
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        return state
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    def connected(self): return self.__db != None
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    def _db(self):
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        if self.__db == None:
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            # Process db_config
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            db_config = self.db_config.copy() # don't modify input!
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            schemas = db_config.pop('schemas', None)
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            module_name, mappings = db_engines[db_config.pop('engine')]
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            module = __import__(module_name)
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            _add_module(module)
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            for orig, new in mappings.iteritems():
192
                try: util.rename_key(db_config, orig, new)
193
                except KeyError: pass
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            # Connect
196
            self.__db = module.connect(**db_config)
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            # Configure connection
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            if self.serializable and not self.autocommit: run_raw_query(self,
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                'SET TRANSACTION ISOLATION LEVEL SERIALIZABLE')
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            if schemas != None:
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                schemas_ = ''.join((esc_name(self, s)+', '
203
                    for s in schemas.split(',')))
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                run_raw_query(self, "SELECT set_config('search_path', \
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%s || current_setting('search_path'), false)", [schemas_])
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        return self.__db
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    class DbCursor(Proxy):
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        def __init__(self, outer):
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            Proxy.__init__(self, outer.db.cursor())
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            self.outer = outer
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            self.query_results = outer.query_results
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            self.query_lookup = None
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            self.result = []
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        def execute(self, query, params=None):
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            self._is_insert = query.upper().find('INSERT') >= 0
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            self.query_lookup = _query_lookup(query, params)
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            try:
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                try:
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                    return_value = self.inner.execute(query, params)
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                    self.outer.do_autocommit()
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                finally: self.query = get_cur_query(self.inner)
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            except Exception, e:
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                _add_cursor_info(e, self, query, params)
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                self.result = e # cache the exception as the result
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                self._cache_result()
229
                raise
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            # Fetch all rows so result will be cached
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            if self.rowcount == 0 and not self._is_insert: consume_rows(self)
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            return return_value
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        def fetchone(self):
235
            row = self.inner.fetchone()
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            if row != None: self.result.append(row)
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            # otherwise, fetched all rows
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            else: self._cache_result()
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            return row
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        def _cache_result(self):
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            # For inserts, only cache exceptions since inserts are not
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            # idempotent, but an invalid insert will always be invalid
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            if self.query_results != None and (not self._is_insert
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                or isinstance(self.result, Exception)):
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                assert self.query_lookup != None
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                self.query_results[self.query_lookup] = self.CacheCursor(
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                    util.dict_subset(dicts.AttrsDictView(self),
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                    ['query', 'result', 'rowcount', 'description']))
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        class CacheCursor:
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            def __init__(self, cached_result): self.__dict__ = cached_result
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            def execute(self, *args, **kw_args):
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                if isinstance(self.result, Exception): raise self.result
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                # otherwise, result is a rows list
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                self.iter = iter(self.result)
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            def fetchone(self):
261
                try: return self.iter.next()
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                except StopIteration: return None
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    def esc_value(self, value):
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        module = util.root_module(self.db)
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        if module == 'psycopg2': str_ = self.db.cursor().mogrify('%s', [value])
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        elif module == 'MySQLdb':
268
            import _mysql
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            str_ = _mysql.escape_string(value)
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        else: raise NotImplementedError("Can't escape value for "+module
271
            +' database')
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        return strings.to_unicode(str_)
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    def esc_name(self, name): return esc_name(self, name) # calls global func
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    def run_query(self, query, params=None, cacheable=False, log_level=2):
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        '''Translates known DB errors to typed exceptions:
278
        See self.DbCursor.execute().'''
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        assert query != None
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        if not self.caching: cacheable = False
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        used_cache = False
283
        try:
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            # Get cursor
285
            if cacheable:
286
                query_lookup = _query_lookup(query, params)
287
                try:
288
                    cur = self.query_results[query_lookup]
289
                    used_cache = True
290
                except KeyError: cur = self.DbCursor(self)
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            else: cur = self.db.cursor()
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293
            # Run query
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            cur.execute(query, params)
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        finally:
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            if self.debug: # only compute msg if needed
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                if used_cache: cache_status = 'Cache hit'
298
                elif cacheable: cache_status = 'Cache miss'
299
                else: cache_status = 'Non-cacheable'
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                self.log_debug(cache_status+': '+strings.one_line(
301
                    str(get_cur_query(cur, query, params))), log_level)
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303
        return cur
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305
    def is_cached(self, query, params=None):
306
        return _query_lookup(query, params) in self.query_results
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308
    def with_savepoint(self, func):
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        savepoint = 'level_'+str(self._savepoint)
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        self.run_query('SAVEPOINT '+savepoint)
311
        self._savepoint += 1
312
        try:
313
            try: return_val = func()
314
            finally:
315
                self._savepoint -= 1
316
                assert self._savepoint >= 0
317
        except:
318
            self.run_query('ROLLBACK TO SAVEPOINT '+savepoint)
319
            raise
320
        else:
321
            self.run_query('RELEASE SAVEPOINT '+savepoint)
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            self.do_autocommit()
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            return return_val
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325
    def do_autocommit(self):
326
        '''Autocommits if outside savepoint'''
327
        assert self._savepoint >= 0
328
        if self.autocommit and self._savepoint == 0:
329
            self.log_debug('Autocommiting')
330
            self.db.commit()
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connect = DbConn
333
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##### Querying
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336 1894 aaronmk
def run_raw_query(db, *args, **kw_args):
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    '''For params, see DbConn.run_query()'''
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    return db.run_query(*args, **kw_args)
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def mogrify(db, query, params):
341
    module = util.root_module(db.db)
342
    if module == 'psycopg2': return db.db.cursor().mogrify(query, params)
343
    else: raise NotImplementedError("Can't mogrify query for "+module+
344
        ' database')
345
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##### Recoverable querying
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def with_savepoint(db, func): return db.with_savepoint(func)
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def run_query(db, query, params=None, recover=None, cacheable=False, **kw_args):
351
    '''For params, see run_raw_query()'''
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    if recover == None: recover = False
353
354 2148 aaronmk
    try:
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        def run(): return run_raw_query(db, query, params, cacheable, **kw_args)
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        if recover and not db.is_cached(query, params):
357
            return with_savepoint(db, run)
358
        else: return run() # don't need savepoint if cached
359
    except Exception, e:
360
        if not recover: raise # need savepoint to run index_cols()
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        msg = exc.str_(e)
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363 2148 aaronmk
        match = re.search(r'duplicate key value violates unique constraint '
364 2368 aaronmk
            r'"((_?[^\W_]+)_[^"]+?)"', msg)
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        if match:
366
            constraint, table = match.groups()
367
            try: cols = index_cols(db, table, constraint)
368
            except NotImplementedError: raise e
369 2306 aaronmk
            else: raise DuplicateKeyException(constraint, cols, e)
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        match = re.search(r'null value in column "(\w+?)" violates not-null '
372 2239 aaronmk
            r'constraint', msg)
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        if match: raise NullValueException('NOT NULL', [match.group(1)], e)
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        match = re.search(r'\b(?:invalid input (?:syntax|value)\b.*?'
376
            r'|date/time field value out of range): "(.+?)"\n'
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            r'(?:(?s).*?)\bfunction "(\w+?)".*?\bat assignment', msg)
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        if match:
379 2373 aaronmk
            value, name = match.groups()
380
            raise FunctionValueException(name, strings.to_unicode(value), e)
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        match = re.search(r'relation "(\w+?)" already exists', msg)
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        if match: raise DuplicateTableException(match.group(1), e)
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        match = re.search(r'function "(\w+?)" already exists', msg)
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        if match: raise DuplicateFunctionException(match.group(1), e)
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388 2148 aaronmk
        raise # no specific exception raised
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##### Basic queries
391
392 2153 aaronmk
def next_version(name):
393
    '''Prepends the version # so it won't be removed if the name is truncated'''
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    version = 1 # first existing name was version 0
395 2153 aaronmk
    match = re.match(r'^v(\d+)_(.*)$', name)
396
    if match:
397
        version = int(match.group(1))+1
398
        name = match.group(2)
399
    return 'v'+str(version)+'_'+name
400
401 2386 aaronmk
def run_query_into(db, query, params, into=None, *args, **kw_args):
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    '''Outputs a query to a temp table.
403
    For params, see run_query().
404
    '''
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    if into == None: return run_query(db, query, params, *args, **kw_args)
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    else: # place rows in temp table
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        assert isinstance(into, sql_gen.Table)
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        kw_args['recover'] = True
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411
        temp = not db.debug # tables are created as permanent in debug mode
412
        # "temporary tables cannot specify a schema name", so remove schema
413
        if temp: into.schema = None
414
415 2153 aaronmk
        while True:
416
            try:
417 2194 aaronmk
                create_query = 'CREATE'
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                if temp: create_query += ' TEMP'
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                create_query += ' TABLE '+into.to_str(db)+' AS '+query
420 2194 aaronmk
421
                return run_query(db, create_query, params, *args, **kw_args)
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                    # CREATE TABLE AS sets rowcount to # rows in query
423
            except DuplicateTableException, e:
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                into.name = next_version(into.name)
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                # try again with next version of name
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order_by_pkey = object() # tells mk_select() to order by the pkey
428
429 2199 aaronmk
distinct_on_all = object() # tells mk_select() to SELECT DISTINCT ON all columns
430
431 2233 aaronmk
def mk_select(db, tables, fields=None, conds=None, distinct_on=[], limit=None,
432 2293 aaronmk
    start=None, order_by=order_by_pkey, default_table=None):
433 1981 aaronmk
    '''
434 2121 aaronmk
    @param tables The single table to select from, or a list of tables to join
435 2280 aaronmk
        together, with tables after the first being sql_gen.Join objects
436 1981 aaronmk
    @param fields Use None to select all fields in the table
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    @param conds WHERE conditions: [(compare_left_side, compare_right_side),...]
438 2379 aaronmk
        * container can be any iterable type
439 2399 aaronmk
        * compare_left_side: sql_gen.Code|str (for col name)
440
        * compare_right_side: sql_gen.ValueCond|literal value
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    @param distinct_on The columns to SELECT DISTINCT ON, or distinct_on_all to
442
        use all columns
443 2054 aaronmk
    @return tuple(query, params)
444 1981 aaronmk
    '''
445 2315 aaronmk
    # Parse tables param
446 2121 aaronmk
    if not lists.is_seq(tables): tables = [tables]
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    tables = list(tables) # don't modify input! (list() copies input)
448 2315 aaronmk
    table0 = sql_gen.as_Table(tables.pop(0)) # first table is separate
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450 2315 aaronmk
    # Parse other params
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    if conds == None: conds = []
452
    elif isinstance(conds, dict): conds = conds.items()
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    conds = list(conds) # don't modify input! (list() copies input)
454 135 aaronmk
    assert limit == None or type(limit) == int
455 865 aaronmk
    assert start == None or type(start) == int
456 2315 aaronmk
    if order_by is order_by_pkey:
457
        if distinct_on != []: order_by = None
458
        else: order_by = pkey(db, table0, recover=True)
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460 2315 aaronmk
    query = 'SELECT'
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462 2315 aaronmk
    def parse_col(col): return sql_gen.as_Col(col, default_table).to_str(db)
463 2056 aaronmk
464 2200 aaronmk
    # DISTINCT ON columns
465 2233 aaronmk
    if distinct_on != []:
466 2200 aaronmk
        query += ' DISTINCT'
467 2254 aaronmk
        if distinct_on is not distinct_on_all:
468 2200 aaronmk
            query += ' ON ('+(', '.join(map(parse_col, distinct_on)))+')'
469
470
    # Columns
471
    query += ' '
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    if fields == None: query += '*'
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    else: query += ', '.join(map(parse_col, fields))
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475
    # Main table
476 2271 aaronmk
    query += ' FROM '+table0.to_str(db)
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    # Add joins
479 2271 aaronmk
    left_table = table0
480 2263 aaronmk
    for join_ in tables:
481
        table = join_.table
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483 2343 aaronmk
        # Parse special values
484
        if join_.type_ is sql_gen.filter_out: # filter no match
485 2376 aaronmk
            conds.append((sql_gen.Col(table_not_null_col(db, table), table),
486
                None))
487 2343 aaronmk
488 2277 aaronmk
        query += ' '+join_.to_str(db, left_table)
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490
        left_table = table
491
492 865 aaronmk
    missing = True
493 2376 aaronmk
    if conds != []:
494 2410 aaronmk
        query += ' WHERE '+(' AND '.join(('('+sql_gen.ColValueCond(l, r)
495
            .to_str(db)+')' for l, r in conds)))
496 865 aaronmk
        missing = False
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    if order_by != None:
498 2285 aaronmk
        query += ' ORDER BY '+sql_gen.as_Col(order_by, table0).to_str(db)
499 865 aaronmk
    if limit != None: query += ' LIMIT '+str(limit); missing = False
500
    if start != None:
501
        if start != 0: query += ' OFFSET '+str(start)
502
        missing = False
503
    if missing: warnings.warn(DbWarning(
504
        'SELECT statement missing a WHERE, LIMIT, or OFFSET clause: '+query))
505
506 2315 aaronmk
    return (query, [])
507 11 aaronmk
508 2054 aaronmk
def select(db, *args, **kw_args):
509
    '''For params, see mk_select() and run_query()'''
510
    recover = kw_args.pop('recover', None)
511
    cacheable = kw_args.pop('cacheable', True)
512
513
    query, params = mk_select(db, *args, **kw_args)
514
    return run_query(db, query, params, recover, cacheable)
515
516 2066 aaronmk
def mk_insert_select(db, table, cols=None, select_query=None, params=None,
517 2292 aaronmk
    returning=None, embeddable=False):
518 1960 aaronmk
    '''
519
    @param returning str|None An inserted column (such as pkey) to return
520 2070 aaronmk
    @param embeddable Whether the query should be embeddable as a nested SELECT.
521 2073 aaronmk
        Warning: If you set this and cacheable=True when the query is run, the
522
        query will be fully cached, not just if it raises an exception.
523 1960 aaronmk
    '''
524 2328 aaronmk
    table = sql_gen.as_Table(table)
525 2318 aaronmk
    if cols == []: cols = None # no cols (all defaults) = unknown col names
526
    if cols != None: cols = [sql_gen.as_Col(v).to_str(db) for v in cols]
527 2063 aaronmk
    if select_query == None: select_query = 'DEFAULT VALUES'
528 2327 aaronmk
    if returning != None: returning = sql_gen.as_Col(returning, table)
529 2063 aaronmk
530
    # Build query
531 2328 aaronmk
    query = 'INSERT INTO '+table.to_str(db)
532 2318 aaronmk
    if cols != None: query += ' ('+', '.join(cols)+')'
533 2063 aaronmk
    query += ' '+select_query
534
535
    if returning != None:
536 2327 aaronmk
        returning_name = copy.copy(returning)
537
        returning_name.table = None
538
        returning_name = returning_name.to_str(db)
539
        query += ' RETURNING '+returning_name
540 2063 aaronmk
541 2070 aaronmk
    if embeddable:
542 2327 aaronmk
        assert returning != None
543
544 2070 aaronmk
        # Create function
545 2330 aaronmk
        function_name = '_'.join(['insert', table.name] + cols)
546 2327 aaronmk
        return_type = 'SETOF '+returning.to_str(db)+'%TYPE'
547 2189 aaronmk
        while True:
548
            try:
549 2327 aaronmk
                func_schema = None
550
                if not db.debug: func_schema = 'pg_temp'
551
                function = sql_gen.Table(function_name, func_schema).to_str(db)
552 2194 aaronmk
553 2189 aaronmk
                function_query = '''\
554
CREATE FUNCTION '''+function+'''() RETURNS '''+return_type+'''
555 2070 aaronmk
    LANGUAGE sql
556
    AS $$'''+mogrify(db, query, params)+''';$$;
557
'''
558 2189 aaronmk
                run_query(db, function_query, recover=True, cacheable=True)
559
                break # this version was successful
560
            except DuplicateFunctionException, e:
561
                function_name = next_version(function_name)
562
                # try again with next version of name
563 2070 aaronmk
564 2337 aaronmk
        # Return query that uses function
565
        func_table = sql_gen.NamedTable('f', sql_gen.CustomCode(function+'()'),
566
            [returning_name]) # AS clause requires function alias
567
        return mk_select(db, func_table, start=0, order_by=None)
568 2070 aaronmk
569 2066 aaronmk
    return (query, params)
570
571
def insert_select(db, *args, **kw_args):
572 2085 aaronmk
    '''For params, see mk_insert_select() and run_query_into()
573 2386 aaronmk
    @param into sql_gen.Table with suggested name of temp table to put RETURNING
574
        values in
575 2072 aaronmk
    '''
576 2386 aaronmk
    into = kw_args.pop('into', None)
577
    if into != None: kw_args['embeddable'] = True
578 2066 aaronmk
    recover = kw_args.pop('recover', None)
579
    cacheable = kw_args.pop('cacheable', True)
580
581
    query, params = mk_insert_select(db, *args, **kw_args)
582 2386 aaronmk
    return run_query_into(db, query, params, into, recover=recover,
583 2153 aaronmk
        cacheable=cacheable)
584 2063 aaronmk
585 2066 aaronmk
default = object() # tells insert() to use the default value for a column
586
587 2063 aaronmk
def insert(db, table, row, *args, **kw_args):
588 2085 aaronmk
    '''For params, see insert_select()'''
589 1960 aaronmk
    if lists.is_seq(row): cols = None
590
    else:
591
        cols = row.keys()
592
        row = row.values()
593
    row = list(row) # ensure that "!= []" works
594
595 1961 aaronmk
    # Check for special values
596
    labels = []
597
    values = []
598
    for value in row:
599 2254 aaronmk
        if value is default: labels.append('DEFAULT')
600 1961 aaronmk
        else:
601
            labels.append('%s')
602
            values.append(value)
603
604
    # Build query
605 2063 aaronmk
    if values != []: query = ' VALUES ('+(', '.join(labels))+')'
606
    else: query = None
607 1554 aaronmk
608 2064 aaronmk
    return insert_select(db, table, cols, query, values, *args, **kw_args)
609 11 aaronmk
610 2402 aaronmk
def mk_update(db, table, changes=None, cond=None):
611
    '''
612
    @param changes [(col, new_value),...]
613
        * container can be any iterable type
614
        * col: sql_gen.Code|str (for col name)
615
        * new_value: sql_gen.Code|literal value
616
    @param cond sql_gen.Code WHERE condition. e.g. use sql_gen.*Cond objects.
617
    @return str query
618
    '''
619
    query = 'UPDATE '+sql_gen.as_Table(table).to_str(db)+'\nSET\n'
620 2405 aaronmk
    query += ',\n'.join((sql_gen.to_name_only_col(col, table).to_str(db)+' = '
621 2402 aaronmk
        +sql_gen.as_Value(new_value).to_str(db) for col, new_value in changes))
622
    if cond != None: query += ' WHERE '+cond.to_str(db)
623
624
    return query
625
626
def update(db, *args, **kw_args):
627
    '''For params, see mk_update() and run_query()'''
628
    recover = kw_args.pop('recover', None)
629
630
    return run_query(db, mk_update(db, *args, **kw_args), [], recover)
631
632 135 aaronmk
def last_insert_id(db):
633 1849 aaronmk
    module = util.root_module(db.db)
634 135 aaronmk
    if module == 'psycopg2': return value(run_query(db, 'SELECT lastval()'))
635
    elif module == 'MySQLdb': return db.insert_id()
636
    else: return None
637 13 aaronmk
638 1968 aaronmk
def truncate(db, table, schema='public'):
639
    return run_query(db, 'TRUNCATE '+qual_name(db, schema, table)+' CASCADE')
640 832 aaronmk
641 2394 aaronmk
def mk_flatten_mapping(db, into, cols, preserve=[], as_items=False):
642 2383 aaronmk
    '''Creates a mapping from original column names (which may have collisions)
643 2415 aaronmk
    to names that will be distinct among the columns' tables.
644 2383 aaronmk
    This is meant to be used for several tables that are being joined together.
645 2415 aaronmk
    @param cols The columns to combine. Duplicates will be removed.
646
    @param into The table for the new columns.
647 2394 aaronmk
    @param preserve [sql_gen.Col...] Columns not to rename. Note that these
648
        columns will be included in the mapping even if they are not in cols.
649
        The tables of the provided Col objects will be changed to into, so make
650
        copies of them if you want to keep the original tables.
651
    @param as_items Whether to return a list of dict items instead of a dict
652 2383 aaronmk
    @return dict(orig_col=new_col, ...)
653
        * orig_col: sql_gen.Col(orig_col_name, orig_table)
654 2392 aaronmk
        * new_col: sql_gen.Col(orig_col_name, into)
655
        * All mappings use the into table so its name can easily be
656 2383 aaronmk
          changed for all columns at once
657
    '''
658 2415 aaronmk
    cols = lists.uniqify(cols)
659
660 2394 aaronmk
    items = []
661 2389 aaronmk
    for col in preserve:
662 2390 aaronmk
        orig_col = copy.copy(col)
663 2392 aaronmk
        col.table = into
664 2394 aaronmk
        items.append((orig_col, col))
665
    preserve = set(preserve)
666
    for col in cols:
667 2397 aaronmk
        if col not in preserve:
668
            items.append((col, sql_gen.Col(clean_name(str(col)), into)))
669 2394 aaronmk
670
    if not as_items: items = dict(items)
671
    return items
672 2383 aaronmk
673 2393 aaronmk
def flatten(db, into, joins, cols, limit=None, start=None, **kw_args):
674 2391 aaronmk
    '''For params, see mk_flatten_mapping()
675
    @return See return value of mk_flatten_mapping()
676
    '''
677 2394 aaronmk
    items = mk_flatten_mapping(db, into, cols, as_items=True, **kw_args)
678
    cols = [sql_gen.NamedCol(new.name, old) for old, new in items]
679 2391 aaronmk
    run_query_into(db, *mk_select(db, joins, cols, limit=limit, start=start),
680 2392 aaronmk
        into=into)
681 2394 aaronmk
    return dict(items)
682 2391 aaronmk
683 2414 aaronmk
##### Database structure queries
684
685 2426 aaronmk
def table_row_count(db, table, recover=None):
686
    return value(run_query(db, *mk_select(db, table, [sql_gen.row_count],
687 2430 aaronmk
        order_by=None, start=0), recover=recover))
688 2426 aaronmk
689 2414 aaronmk
def table_cols(db, table, recover=None):
690
    return list(col_names(select(db, table, limit=0, order_by=None,
691
        recover=recover)))
692
693 2291 aaronmk
def pkey(db, table, recover=None):
694 832 aaronmk
    '''Assumed to be first column in table'''
695 2339 aaronmk
    return table_cols(db, table, recover)[0]
696 832 aaronmk
697 2340 aaronmk
not_null_col = 'not_null'
698
699
def table_not_null_col(db, table, recover=None):
700
    '''Name assumed to be the value of not_null_col. If not found, uses pkey.'''
701
    if not_null_col in table_cols(db, table, recover): return not_null_col
702
    else: return pkey(db, table, recover)
703
704 853 aaronmk
def index_cols(db, table, index):
705
    '''Can also use this for UNIQUE constraints, because a UNIQUE index is
706
    automatically created. When you don't know whether something is a UNIQUE
707
    constraint or a UNIQUE index, use this function.'''
708 1909 aaronmk
    module = util.root_module(db.db)
709
    if module == 'psycopg2':
710
        return list(values(run_query(db, '''\
711 853 aaronmk
SELECT attname
712 866 aaronmk
FROM
713
(
714
        SELECT attnum, attname
715
        FROM pg_index
716
        JOIN pg_class index ON index.oid = indexrelid
717
        JOIN pg_class table_ ON table_.oid = indrelid
718
        JOIN pg_attribute ON attrelid = indrelid AND attnum = ANY (indkey)
719
        WHERE
720
            table_.relname = %(table)s
721
            AND index.relname = %(index)s
722
    UNION
723
        SELECT attnum, attname
724
        FROM
725
        (
726
            SELECT
727
                indrelid
728
                , (regexp_matches(indexprs, E':varattno (\\\\d+)', 'g'))[1]::int
729
                    AS indkey
730
            FROM pg_index
731
            JOIN pg_class index ON index.oid = indexrelid
732
            JOIN pg_class table_ ON table_.oid = indrelid
733
            WHERE
734
                table_.relname = %(table)s
735
                AND index.relname = %(index)s
736
        ) s
737
        JOIN pg_attribute ON attrelid = indrelid AND attnum = indkey
738
) s
739 853 aaronmk
ORDER BY attnum
740
''',
741 1909 aaronmk
            {'table': table, 'index': index}, cacheable=True)))
742
    else: raise NotImplementedError("Can't list index columns for "+module+
743
        ' database')
744 853 aaronmk
745 464 aaronmk
def constraint_cols(db, table, constraint):
746 1849 aaronmk
    module = util.root_module(db.db)
747 464 aaronmk
    if module == 'psycopg2':
748
        return list(values(run_query(db, '''\
749
SELECT attname
750
FROM pg_constraint
751
JOIN pg_class ON pg_class.oid = conrelid
752
JOIN pg_attribute ON attrelid = conrelid AND attnum = ANY (conkey)
753
WHERE
754
    relname = %(table)s
755
    AND conname = %(constraint)s
756
ORDER BY attnum
757
''',
758
            {'table': table, 'constraint': constraint})))
759
    else: raise NotImplementedError("Can't list constraint columns for "+module+
760
        ' database')
761
762 2096 aaronmk
row_num_col = '_row_num'
763
764 2408 aaronmk
def index_col(db, col):
765
    '''Adds an index on a column if it doesn't already exist.'''
766
    assert sql_gen.is_table_col(col)
767
768
    table = col.table
769
    index = sql_gen.as_Table(clean_name(str(col)))
770
    col = sql_gen.to_name_only_col(col)
771
    try: run_query(db, 'CREATE INDEX '+index.to_str(db)+' ON '+table.to_str(db)
772 2411 aaronmk
        +' ('+col.to_str(db)+')', recover=True, cacheable=True)
773 2408 aaronmk
    except DuplicateTableException: pass # index already existed
774
775 2406 aaronmk
def index_pkey(db, table, recover=None):
776
    '''Makes the first column in a table the primary key.
777
    @pre The table must not already have a primary key.
778
    '''
779
    table = sql_gen.as_Table(table)
780
781
    index = sql_gen.as_Table(table.name+'_pkey')
782
    col = sql_gen.to_name_only_col(pkey(db, table, recover))
783
    run_query(db, 'ALTER TABLE '+table.to_str(db)+' ADD CONSTRAINT '
784
        +index.to_str(db)+' PRIMARY KEY('+col.to_str(db)+')', recover=recover)
785
786 2086 aaronmk
def add_row_num(db, table):
787 2117 aaronmk
    '''Adds a row number column to a table. Its name is in row_num_col. It will
788
    be the primary key.'''
789 2320 aaronmk
    table = sql_gen.as_Table(table).to_str(db)
790 2096 aaronmk
    run_query(db, 'ALTER TABLE '+table+' ADD COLUMN '+row_num_col
791 2117 aaronmk
        +' serial NOT NULL PRIMARY KEY')
792 2086 aaronmk
793 1968 aaronmk
def tables(db, schema='public', table_like='%'):
794 1849 aaronmk
    module = util.root_module(db.db)
795 1968 aaronmk
    params = {'schema': schema, 'table_like': table_like}
796 832 aaronmk
    if module == 'psycopg2':
797 1968 aaronmk
        return values(run_query(db, '''\
798
SELECT tablename
799
FROM pg_tables
800
WHERE
801
    schemaname = %(schema)s
802
    AND tablename LIKE %(table_like)s
803
ORDER BY tablename
804
''',
805
            params, cacheable=True))
806
    elif module == 'MySQLdb':
807
        return values(run_query(db, 'SHOW TABLES LIKE %(table_like)s', params,
808
            cacheable=True))
809 832 aaronmk
    else: raise NotImplementedError("Can't list tables for "+module+' database')
810 830 aaronmk
811 833 aaronmk
##### Database management
812
813 1968 aaronmk
def empty_db(db, schema='public', **kw_args):
814
    '''For kw_args, see tables()'''
815
    for table in tables(db, schema, **kw_args): truncate(db, table, schema)
816 833 aaronmk
817 832 aaronmk
##### Heuristic queries
818
819 2104 aaronmk
def put(db, table, row, pkey_=None, row_ct_ref=None):
820 1554 aaronmk
    '''Recovers from errors.
821 2077 aaronmk
    Only works under PostgreSQL (uses INSERT RETURNING).
822
    '''
823 2104 aaronmk
    if pkey_ == None: pkey_ = pkey(db, table, recover=True)
824
825 471 aaronmk
    try:
826 2149 aaronmk
        cur = insert(db, table, row, pkey_, recover=True)
827 1554 aaronmk
        if row_ct_ref != None and cur.rowcount >= 0:
828
            row_ct_ref[0] += cur.rowcount
829
        return value(cur)
830 471 aaronmk
    except DuplicateKeyException, e:
831 2104 aaronmk
        return value(select(db, table, [pkey_],
832 1069 aaronmk
            util.dict_subset_right_join(row, e.cols), recover=True))
833 471 aaronmk
834 473 aaronmk
def get(db, table, row, pkey, row_ct_ref=None, create=False):
835 830 aaronmk
    '''Recovers from errors'''
836 2209 aaronmk
    try: return value(select(db, table, [pkey], row, limit=1, recover=True))
837 14 aaronmk
    except StopIteration:
838 40 aaronmk
        if not create: raise
839 471 aaronmk
        return put(db, table, row, pkey, row_ct_ref) # insert new row
840 2078 aaronmk
841 2416 aaronmk
def put_table(db, out_table, in_tables, mapping, row_ct_ref=None):
842 2078 aaronmk
    '''Recovers from errors.
843
    Only works under PostgreSQL (uses INSERT RETURNING).
844 2131 aaronmk
    @param in_tables The main input table to select from, followed by a list of
845
        tables to join with it using the main input table's pkey
846 2312 aaronmk
    @param mapping dict(out_table_col=in_table_col, ...)
847
        * out_table_col: sql_gen.Col|str
848 2323 aaronmk
        * in_table_col: sql_gen.Col Wrap literal values in a sql_gen.NamedCol
849 2312 aaronmk
    @return sql_gen.Col Where the output pkeys are made available
850 2078 aaronmk
    '''
851 2329 aaronmk
    out_table = sql_gen.as_Table(out_table)
852 2312 aaronmk
    for in_table_col in mapping.itervalues():
853
        assert isinstance(in_table_col, sql_gen.Col)
854
855 2329 aaronmk
    temp_prefix = out_table.name
856 2387 aaronmk
    pkeys = sql_gen.Table(temp_prefix+'_pkeys')
857 2131 aaronmk
858 2382 aaronmk
    # Create input joins from list of input tables
859
    in_tables_ = in_tables[:] # don't modify input!
860
    in_tables0 = in_tables_.pop(0) # first table is separate
861 2279 aaronmk
    in_pkey = pkey(db, in_tables0, recover=True)
862 2285 aaronmk
    in_pkey_col = sql_gen.as_Col(in_pkey, in_tables0)
863 2352 aaronmk
    input_joins = [in_tables0]+[sql_gen.Join(v, {in_pkey: sql_gen.join_same})
864 2382 aaronmk
        for v in in_tables_]
865 2131 aaronmk
866 2395 aaronmk
    db.log_debug('Joining together input tables')
867
    # Place in new table for speed and so don't modify input if values edited
868
    in_table = sql_gen.Table(temp_prefix+'_in')
869
    flatten_cols = filter(sql_gen.is_table_col, mapping.values())
870
    mapping = dicts.join(mapping, flatten(db, in_table, input_joins,
871
        flatten_cols, preserve=[in_pkey_col], start=0))
872
    input_joins = [in_table]
873
874 2279 aaronmk
    out_pkey = pkey(db, out_table, recover=True)
875 2285 aaronmk
    out_pkey_col = sql_gen.as_Col(out_pkey, out_table)
876 2142 aaronmk
877 2387 aaronmk
    pkeys_names = [in_pkey, out_pkey]
878 2236 aaronmk
    pkeys_cols = [in_pkey_col, out_pkey_col]
879
880 2201 aaronmk
    pkeys_table_exists_ref = [False]
881 2420 aaronmk
    def insert_into_pkeys(joins, cols):
882
        query, params = mk_select(db, joins, cols, order_by=None, start=0)
883 2201 aaronmk
        if pkeys_table_exists_ref[0]:
884 2387 aaronmk
            insert_select(db, pkeys, pkeys_names, query, params)
885 2201 aaronmk
        else:
886 2387 aaronmk
            run_query_into(db, query, params, into=pkeys)
887 2201 aaronmk
            pkeys_table_exists_ref[0] = True
888
889 2429 aaronmk
    limit_ref = [None]
890 2380 aaronmk
    conds = set()
891 2233 aaronmk
    distinct_on = []
892 2325 aaronmk
    def mk_main_select(joins, cols):
893 2429 aaronmk
        return mk_select(db, joins, cols, conds, distinct_on,
894
            limit=limit_ref[0], start=0)
895 2132 aaronmk
896 2309 aaronmk
    def log_exc(e):
897
        db.log_debug('Caught exception: '+exc.str_(e, first_line_only=True))
898 2429 aaronmk
    def remove_all_rows(msg):
899
        warnings.warn(DbWarning(msg))
900
        db.log_debug(msg.partition('\n')[0])
901
        db.log_debug('Returning NULL for all rows')
902
        limit_ref[0] = 0 # just create an empty pkeys table
903 2409 aaronmk
    def ignore(in_col, value):
904
        in_col_str = str(in_col)
905
        db.log_debug('Adding index on '+in_col_str+' to enable fast filtering')
906
        index_col(db, in_col)
907
        db.log_debug('Ignoring rows with '+in_col_str+' = '+repr(value))
908 2403 aaronmk
    def remove_rows(in_col, value):
909 2409 aaronmk
        ignore(in_col, value)
910 2378 aaronmk
        cond = (in_col, sql_gen.CompareCond(value, '!='))
911
        assert cond not in conds # avoid infinite loops
912 2380 aaronmk
        conds.add(cond)
913 2403 aaronmk
    def invalid2null(in_col, value):
914 2409 aaronmk
        ignore(in_col, value)
915 2403 aaronmk
        update(db, in_table, [(in_col, None)],
916
            sql_gen.ColValueCond(in_col, value))
917 2245 aaronmk
918 2206 aaronmk
    # Do inserts and selects
919 2257 aaronmk
    join_cols = {}
920 2404 aaronmk
    insert_out_pkeys = sql_gen.Table(temp_prefix+'_insert_out_pkeys')
921
    insert_in_pkeys = sql_gen.Table(temp_prefix+'_insert_in_pkeys')
922 2206 aaronmk
    while True:
923 2303 aaronmk
        has_joins = join_cols != {}
924
925 2305 aaronmk
        # Prepare to insert new rows
926 2325 aaronmk
        insert_joins = input_joins[:] # don't modify original!
927 2403 aaronmk
        insert_args = dict(recover=True, cacheable=False)
928 2303 aaronmk
        if has_joins:
929 2317 aaronmk
            distinct_on = [v.to_Col() for v in join_cols.values()]
930 2325 aaronmk
            insert_joins.append(sql_gen.Join(out_table, join_cols,
931
                sql_gen.filter_out))
932
        else:
933 2404 aaronmk
            insert_args.update(dict(returning=out_pkey, into=insert_out_pkeys))
934 2303 aaronmk
935 2305 aaronmk
        db.log_debug('Inserting new rows')
936 2206 aaronmk
        try:
937
            cur = insert_select(db, out_table, mapping.keys(),
938 2325 aaronmk
                *mk_main_select(insert_joins, mapping.values()), **insert_args)
939 2357 aaronmk
            break # insert successful
940 2206 aaronmk
        except DuplicateKeyException, e:
941 2309 aaronmk
            log_exc(e)
942
943 2258 aaronmk
            old_join_cols = join_cols.copy()
944 2334 aaronmk
            join_cols.update(util.dict_subset(mapping, e.cols))
945 2245 aaronmk
            db.log_debug('Ignoring existing rows, comparing on '+str(join_cols))
946 2258 aaronmk
            assert join_cols != old_join_cols # avoid infinite loops
947 2230 aaronmk
        except NullValueException, e:
948 2309 aaronmk
            log_exc(e)
949
950 2230 aaronmk
            out_col, = e.cols
951
            try: in_col = mapping[out_col]
952 2356 aaronmk
            except KeyError:
953 2429 aaronmk
                remove_all_rows('Missing mapping for NOT NULL '+out_col)
954 2403 aaronmk
            else: remove_rows(in_col, None)
955 2243 aaronmk
        except FunctionValueException, e:
956 2309 aaronmk
            log_exc(e)
957
958 2344 aaronmk
            assert e.name == out_table.name
959 2243 aaronmk
            out_col = 'value' # assume function param was named "value"
960 2403 aaronmk
            invalid2null(mapping[out_col], e.value)
961 2429 aaronmk
        except DatabaseErrors, e:
962
            log_exc(e)
963
964
            remove_all_rows('No handler for exception: '+exc.str_(e))
965 2358 aaronmk
        # after exception handled, rerun loop with additional constraints
966 2132 aaronmk
967 2357 aaronmk
    if row_ct_ref != None and cur.rowcount >= 0:
968
        row_ct_ref[0] += cur.rowcount
969
970
    if has_joins:
971
        select_joins = input_joins+[sql_gen.Join(out_table, join_cols)]
972
        db.log_debug('Getting output pkeys of existing/inserted rows')
973 2420 aaronmk
        insert_into_pkeys(select_joins, pkeys_cols)
974 2357 aaronmk
    else:
975 2404 aaronmk
        add_row_num(db, insert_out_pkeys) # for joining with input pkeys
976 2357 aaronmk
977
        db.log_debug('Getting input pkeys for rows in insert')
978
        run_query_into(db, *mk_main_select(input_joins, [in_pkey]),
979 2404 aaronmk
            into=insert_in_pkeys)
980
        add_row_num(db, insert_in_pkeys) # for joining with output pkeys
981 2357 aaronmk
982 2428 aaronmk
        assert table_row_count(db, insert_out_pkeys) == table_row_count(db,
983
            insert_in_pkeys)
984
985 2357 aaronmk
        db.log_debug('Joining together output and input pkeys')
986 2404 aaronmk
        pkey_joins = [insert_in_pkeys, sql_gen.Join(insert_out_pkeys,
987 2357 aaronmk
            {row_num_col: sql_gen.join_same_not_null})]
988 2420 aaronmk
        insert_into_pkeys(pkey_joins, pkeys_names)
989 2357 aaronmk
990 2413 aaronmk
    db.log_debug('Adding pkey on returned pkeys table to enable fast joins')
991 2407 aaronmk
    index_pkey(db, pkeys)
992
993 2357 aaronmk
    db.log_debug("Setting missing rows' pkeys to NULL")
994 2387 aaronmk
    missing_rows_joins = input_joins+[sql_gen.Join(pkeys,
995 2357 aaronmk
        {in_pkey: sql_gen.join_same_not_null}, sql_gen.filter_out)]
996
        # must use join_same_not_null or query will take forever
997 2420 aaronmk
    insert_into_pkeys(missing_rows_joins,
998
        [in_pkey_col, sql_gen.NamedCol(out_pkey, None)])
999 2357 aaronmk
1000 2428 aaronmk
    assert table_row_count(db, pkeys) == table_row_count(db, in_table)
1001
1002 2387 aaronmk
    return sql_gen.Col(out_pkey, pkeys)
1003 2115 aaronmk
1004
##### Data cleanup
1005
1006 2290 aaronmk
def cleanup_table(db, table, cols):
1007 2115 aaronmk
    def esc_name_(name): return esc_name(db, name)
1008
1009 2290 aaronmk
    table = sql_gen.as_Table(table).to_str(db)
1010 2115 aaronmk
    cols = map(esc_name_, cols)
1011
1012
    run_query(db, 'UPDATE '+table+' SET\n'+(',\n'.join(('\n'+col
1013
        +' = nullif(nullif(trim(both from '+col+"), %(null0)s), %(null1)s)"
1014
            for col in cols))),
1015
        dict(null0='', null1=r'\N'))