1
|
# Database access
|
2
|
|
3
|
import copy
|
4
|
import operator
|
5
|
import re
|
6
|
import warnings
|
7
|
|
8
|
import exc
|
9
|
import dicts
|
10
|
import iters
|
11
|
import lists
|
12
|
from Proxy import Proxy
|
13
|
import rand
|
14
|
import sql_gen
|
15
|
import strings
|
16
|
import util
|
17
|
|
18
|
##### Exceptions
|
19
|
|
20
|
def get_cur_query(cur, input_query=None):
|
21
|
raw_query = None
|
22
|
if hasattr(cur, 'query'): raw_query = cur.query
|
23
|
elif hasattr(cur, '_last_executed'): raw_query = cur._last_executed
|
24
|
|
25
|
if raw_query != None: return raw_query
|
26
|
else: return '[input] '+strings.ustr(input_query)
|
27
|
|
28
|
def _add_cursor_info(e, *args, **kw_args):
|
29
|
'''For params, see get_cur_query()'''
|
30
|
exc.add_msg(e, 'query: '+strings.ustr(get_cur_query(*args, **kw_args)))
|
31
|
|
32
|
class DbException(exc.ExceptionWithCause):
|
33
|
def __init__(self, msg, cause=None, cur=None):
|
34
|
exc.ExceptionWithCause.__init__(self, msg, cause, cause_newline=True)
|
35
|
if cur != None: _add_cursor_info(self, cur)
|
36
|
|
37
|
class ExceptionWithName(DbException):
|
38
|
def __init__(self, name, cause=None):
|
39
|
DbException.__init__(self, 'for name: '+strings.as_tt(str(name)), cause)
|
40
|
self.name = name
|
41
|
|
42
|
class ExceptionWithNameValue(DbException):
|
43
|
def __init__(self, name, value, cause=None):
|
44
|
DbException.__init__(self, 'for name: '+strings.as_tt(str(name))
|
45
|
+'; value: '+strings.as_tt(repr(value)), cause)
|
46
|
self.name = name
|
47
|
self.value = value
|
48
|
|
49
|
class ConstraintException(DbException):
|
50
|
def __init__(self, name, cols, cause=None):
|
51
|
DbException.__init__(self, 'Violated '+strings.as_tt(name)
|
52
|
+' constraint on columns: '+strings.as_tt(', '.join(cols)), cause)
|
53
|
self.name = name
|
54
|
self.cols = cols
|
55
|
|
56
|
class MissingCastException(DbException):
|
57
|
def __init__(self, type_, col, cause=None):
|
58
|
DbException.__init__(self, 'Missing cast to type '+strings.as_tt(type_)
|
59
|
+' on column: '+strings.as_tt(col), cause)
|
60
|
self.type = type_
|
61
|
self.col = col
|
62
|
|
63
|
class NameException(DbException): pass
|
64
|
|
65
|
class DuplicateKeyException(ConstraintException): pass
|
66
|
|
67
|
class NullValueException(ConstraintException): pass
|
68
|
|
69
|
class FunctionValueException(ExceptionWithNameValue): pass
|
70
|
|
71
|
class DuplicateTableException(ExceptionWithName): pass
|
72
|
|
73
|
class DuplicateFunctionException(ExceptionWithName): pass
|
74
|
|
75
|
class EmptyRowException(DbException): pass
|
76
|
|
77
|
##### Warnings
|
78
|
|
79
|
class DbWarning(UserWarning): pass
|
80
|
|
81
|
##### Result retrieval
|
82
|
|
83
|
def col_names(cur): return (col[0] for col in cur.description)
|
84
|
|
85
|
def rows(cur): return iter(lambda: cur.fetchone(), None)
|
86
|
|
87
|
def consume_rows(cur):
|
88
|
'''Used to fetch all rows so result will be cached'''
|
89
|
iters.consume_iter(rows(cur))
|
90
|
|
91
|
def next_row(cur): return rows(cur).next()
|
92
|
|
93
|
def row(cur):
|
94
|
row_ = next_row(cur)
|
95
|
consume_rows(cur)
|
96
|
return row_
|
97
|
|
98
|
def next_value(cur): return next_row(cur)[0]
|
99
|
|
100
|
def value(cur): return row(cur)[0]
|
101
|
|
102
|
def values(cur): return iters.func_iter(lambda: next_value(cur))
|
103
|
|
104
|
def value_or_none(cur):
|
105
|
try: return value(cur)
|
106
|
except StopIteration: return None
|
107
|
|
108
|
##### Escaping
|
109
|
|
110
|
def esc_name_by_module(module, name):
|
111
|
if module == 'psycopg2' or module == None: quote = '"'
|
112
|
elif module == 'MySQLdb': quote = '`'
|
113
|
else: raise NotImplementedError("Can't escape name for "+module+' database')
|
114
|
return sql_gen.esc_name(name, quote)
|
115
|
|
116
|
def esc_name_by_engine(engine, name, **kw_args):
|
117
|
return esc_name_by_module(db_engines[engine][0], name, **kw_args)
|
118
|
|
119
|
def esc_name(db, name, **kw_args):
|
120
|
return esc_name_by_module(util.root_module(db.db), name, **kw_args)
|
121
|
|
122
|
def qual_name(db, schema, table):
|
123
|
def esc_name_(name): return esc_name(db, name)
|
124
|
table = esc_name_(table)
|
125
|
if schema != None: return esc_name_(schema)+'.'+table
|
126
|
else: return table
|
127
|
|
128
|
##### Database connections
|
129
|
|
130
|
db_config_names = ['engine', 'host', 'user', 'password', 'database', 'schemas']
|
131
|
|
132
|
db_engines = {
|
133
|
'MySQL': ('MySQLdb', {'password': 'passwd', 'database': 'db'}),
|
134
|
'PostgreSQL': ('psycopg2', {}),
|
135
|
}
|
136
|
|
137
|
DatabaseErrors_set = set([DbException])
|
138
|
DatabaseErrors = tuple(DatabaseErrors_set)
|
139
|
|
140
|
def _add_module(module):
|
141
|
DatabaseErrors_set.add(module.DatabaseError)
|
142
|
global DatabaseErrors
|
143
|
DatabaseErrors = tuple(DatabaseErrors_set)
|
144
|
|
145
|
def db_config_str(db_config):
|
146
|
return db_config['engine']+' database '+db_config['database']
|
147
|
|
148
|
log_debug_none = lambda msg, level=2: None
|
149
|
|
150
|
class DbConn:
|
151
|
def __init__(self, db_config, serializable=True, autocommit=False,
|
152
|
caching=True, log_debug=log_debug_none):
|
153
|
self.db_config = db_config
|
154
|
self.serializable = serializable
|
155
|
self.autocommit = autocommit
|
156
|
self.caching = caching
|
157
|
self.log_debug = log_debug
|
158
|
self.debug = log_debug != log_debug_none
|
159
|
|
160
|
self.__db = None
|
161
|
self.query_results = {}
|
162
|
self._savepoint = 0
|
163
|
self._notices_seen = set()
|
164
|
|
165
|
def __getattr__(self, name):
|
166
|
if name == '__dict__': raise Exception('getting __dict__')
|
167
|
if name == 'db': return self._db()
|
168
|
else: raise AttributeError()
|
169
|
|
170
|
def __getstate__(self):
|
171
|
state = copy.copy(self.__dict__) # shallow copy
|
172
|
state['log_debug'] = None # don't pickle the debug callback
|
173
|
state['_DbConn__db'] = None # don't pickle the connection
|
174
|
return state
|
175
|
|
176
|
def connected(self): return self.__db != None
|
177
|
|
178
|
def _db(self):
|
179
|
if self.__db == None:
|
180
|
# Process db_config
|
181
|
db_config = self.db_config.copy() # don't modify input!
|
182
|
schemas = db_config.pop('schemas', None)
|
183
|
module_name, mappings = db_engines[db_config.pop('engine')]
|
184
|
module = __import__(module_name)
|
185
|
_add_module(module)
|
186
|
for orig, new in mappings.iteritems():
|
187
|
try: util.rename_key(db_config, orig, new)
|
188
|
except KeyError: pass
|
189
|
|
190
|
# Connect
|
191
|
self.__db = module.connect(**db_config)
|
192
|
|
193
|
# Configure connection
|
194
|
if self.serializable and not self.autocommit: self.run_query(
|
195
|
'SET TRANSACTION ISOLATION LEVEL SERIALIZABLE', log_level=4)
|
196
|
if schemas != None:
|
197
|
schemas_ = ''.join((esc_name(self, s)+', '
|
198
|
for s in schemas.split(',')))
|
199
|
self.run_query("SELECT set_config('search_path', "
|
200
|
+self.esc_value(schemas_)
|
201
|
+" || current_setting('search_path'), false)", log_level=3)
|
202
|
|
203
|
return self.__db
|
204
|
|
205
|
class DbCursor(Proxy):
|
206
|
def __init__(self, outer):
|
207
|
Proxy.__init__(self, outer.db.cursor())
|
208
|
self.outer = outer
|
209
|
self.query_results = outer.query_results
|
210
|
self.query_lookup = None
|
211
|
self.result = []
|
212
|
|
213
|
def execute(self, query):
|
214
|
self._is_insert = query.startswith('INSERT')
|
215
|
self.query_lookup = query
|
216
|
try:
|
217
|
try:
|
218
|
cur = self.inner.execute(query)
|
219
|
self.outer.do_autocommit()
|
220
|
finally: self.query = get_cur_query(self.inner, query)
|
221
|
except Exception, e:
|
222
|
_add_cursor_info(e, self, query)
|
223
|
self.result = e # cache the exception as the result
|
224
|
self._cache_result()
|
225
|
raise
|
226
|
if self.rowcount == 0 and query.startswith('SELECT'): # empty SELECT
|
227
|
consume_rows(self) # fetch all rows so result will be cached
|
228
|
return cur
|
229
|
|
230
|
def fetchone(self):
|
231
|
row = self.inner.fetchone()
|
232
|
if row != None: self.result.append(row)
|
233
|
# otherwise, fetched all rows
|
234
|
else: self._cache_result()
|
235
|
return row
|
236
|
|
237
|
def _cache_result(self):
|
238
|
# For inserts, only cache exceptions since inserts are not
|
239
|
# idempotent, but an invalid insert will always be invalid
|
240
|
if self.query_results != None and (not self._is_insert
|
241
|
or isinstance(self.result, Exception)):
|
242
|
|
243
|
assert self.query_lookup != None
|
244
|
self.query_results[self.query_lookup] = self.CacheCursor(
|
245
|
util.dict_subset(dicts.AttrsDictView(self),
|
246
|
['query', 'result', 'rowcount', 'description']))
|
247
|
|
248
|
class CacheCursor:
|
249
|
def __init__(self, cached_result): self.__dict__ = cached_result
|
250
|
|
251
|
def execute(self, *args, **kw_args):
|
252
|
if isinstance(self.result, Exception): raise self.result
|
253
|
# otherwise, result is a rows list
|
254
|
self.iter = iter(self.result)
|
255
|
|
256
|
def fetchone(self):
|
257
|
try: return self.iter.next()
|
258
|
except StopIteration: return None
|
259
|
|
260
|
def esc_value(self, value):
|
261
|
try: str_ = self.mogrify('%s', [value])
|
262
|
except NotImplementedError, e:
|
263
|
module = util.root_module(self.db)
|
264
|
if module == 'MySQLdb':
|
265
|
import _mysql
|
266
|
str_ = _mysql.escape_string(value)
|
267
|
else: raise e
|
268
|
return strings.to_unicode(str_)
|
269
|
|
270
|
def esc_name(self, name): return esc_name(self, name) # calls global func
|
271
|
|
272
|
def std_code(self, str_):
|
273
|
'''Standardizes SQL code.
|
274
|
* Ensures that string literals are prefixed by `E`
|
275
|
'''
|
276
|
if str_.startswith("'"): str_ = 'E'+str_
|
277
|
return str_
|
278
|
|
279
|
def can_mogrify(self):
|
280
|
module = util.root_module(self.db)
|
281
|
return module == 'psycopg2'
|
282
|
|
283
|
def mogrify(self, query, params=None):
|
284
|
if self.can_mogrify(): return self.db.cursor().mogrify(query, params)
|
285
|
else: raise NotImplementedError("Can't mogrify query")
|
286
|
|
287
|
def print_notices(self):
|
288
|
if hasattr(self.db, 'notices'):
|
289
|
for msg in self.db.notices:
|
290
|
if msg not in self._notices_seen:
|
291
|
self._notices_seen.add(msg)
|
292
|
self.log_debug(msg, level=2)
|
293
|
|
294
|
def run_query(self, query, cacheable=False, log_level=2,
|
295
|
debug_msg_ref=None):
|
296
|
'''
|
297
|
@param log_ignore_excs The log_level will be increased by 2 if the query
|
298
|
throws one of these exceptions.
|
299
|
@param debug_msg_ref If specified, the log message will be returned in
|
300
|
this instead of being output. This allows you to filter log messages
|
301
|
depending on the result of the query.
|
302
|
'''
|
303
|
assert query != None
|
304
|
|
305
|
if not self.caching: cacheable = False
|
306
|
used_cache = False
|
307
|
|
308
|
def log_msg(query):
|
309
|
if used_cache: cache_status = 'cache hit'
|
310
|
elif cacheable: cache_status = 'cache miss'
|
311
|
else: cache_status = 'non-cacheable'
|
312
|
return 'DB query: '+cache_status+':\n'+strings.as_code(query, 'SQL')
|
313
|
|
314
|
try:
|
315
|
# Get cursor
|
316
|
if cacheable:
|
317
|
try:
|
318
|
cur = self.query_results[query]
|
319
|
used_cache = True
|
320
|
except KeyError: cur = self.DbCursor(self)
|
321
|
else: cur = self.db.cursor()
|
322
|
|
323
|
# Log query
|
324
|
if self.debug and debug_msg_ref == None: # log before running
|
325
|
self.log_debug(log_msg(query), log_level)
|
326
|
|
327
|
# Run query
|
328
|
cur.execute(query)
|
329
|
finally:
|
330
|
self.print_notices()
|
331
|
if self.debug and debug_msg_ref != None: # return after running
|
332
|
debug_msg_ref[0] = log_msg(str(get_cur_query(cur, query)))
|
333
|
|
334
|
return cur
|
335
|
|
336
|
def is_cached(self, query): return query in self.query_results
|
337
|
|
338
|
def with_autocommit(self, func, autocommit=True):
|
339
|
import psycopg2.extensions
|
340
|
if autocommit:
|
341
|
isolation_level = psycopg2.extensions.ISOLATION_LEVEL_AUTOCOMMIT
|
342
|
else: isolation_level = psycopg2.extensions.ISOLATION_LEVEL_SERIALIZABLE
|
343
|
|
344
|
prev_isolation_level = self.db.isolation_level
|
345
|
self.db.set_isolation_level(isolation_level)
|
346
|
try: return func()
|
347
|
finally: self.db.set_isolation_level(prev_isolation_level)
|
348
|
|
349
|
def with_savepoint(self, func):
|
350
|
savepoint = 'level_'+str(self._savepoint)
|
351
|
self.run_query('SAVEPOINT '+savepoint, log_level=4)
|
352
|
self._savepoint += 1
|
353
|
try:
|
354
|
try: return_val = func()
|
355
|
finally:
|
356
|
self._savepoint -= 1
|
357
|
assert self._savepoint >= 0
|
358
|
except:
|
359
|
self.run_query('ROLLBACK TO SAVEPOINT '+savepoint, log_level=4)
|
360
|
raise
|
361
|
else:
|
362
|
self.run_query('RELEASE SAVEPOINT '+savepoint, log_level=4)
|
363
|
self.do_autocommit()
|
364
|
return return_val
|
365
|
|
366
|
def do_autocommit(self):
|
367
|
'''Autocommits if outside savepoint'''
|
368
|
assert self._savepoint >= 0
|
369
|
if self.autocommit and self._savepoint == 0:
|
370
|
self.log_debug('Autocommitting')
|
371
|
self.db.commit()
|
372
|
|
373
|
def col_info(self, col):
|
374
|
table = sql_gen.Table('columns', 'information_schema')
|
375
|
cols = ['data_type', 'column_default',
|
376
|
cast(self, 'boolean', 'is_nullable')]
|
377
|
|
378
|
conds = [('table_name', col.table.name), ('column_name', col.name)]
|
379
|
schema = col.table.schema
|
380
|
if schema != None: conds.append(('table_schema', schema))
|
381
|
|
382
|
type_, default, nullable = row(select(self, table, cols, conds,
|
383
|
order_by='table_schema', limit=1, log_level=3))
|
384
|
# TODO: order_by search_path schema order
|
385
|
default = sql_gen.as_Code(default, self)
|
386
|
|
387
|
return sql_gen.TypedCol(col.name, type_, default, nullable)
|
388
|
|
389
|
connect = DbConn
|
390
|
|
391
|
##### Recoverable querying
|
392
|
|
393
|
def with_savepoint(db, func): return db.with_savepoint(func)
|
394
|
|
395
|
def run_query(db, query, recover=None, cacheable=False, log_level=2,
|
396
|
log_ignore_excs=None, **kw_args):
|
397
|
'''For params, see DbConn.run_query()'''
|
398
|
if recover == None: recover = False
|
399
|
if log_ignore_excs == None: log_ignore_excs = ()
|
400
|
log_ignore_excs = tuple(log_ignore_excs)
|
401
|
|
402
|
debug_msg_ref = None # usually, db.run_query() logs query before running it
|
403
|
# But if filtering with log_ignore_excs, wait until after exception parsing
|
404
|
if log_ignore_excs != () or not db.can_mogrify(): debug_msg_ref = [None]
|
405
|
|
406
|
try:
|
407
|
try:
|
408
|
def run(): return db.run_query(query, cacheable, log_level,
|
409
|
debug_msg_ref, **kw_args)
|
410
|
if recover and not db.is_cached(query):
|
411
|
return with_savepoint(db, run)
|
412
|
else: return run() # don't need savepoint if cached
|
413
|
except Exception, e:
|
414
|
if not recover: raise # need savepoint to run index_cols()
|
415
|
msg = exc.str_(e)
|
416
|
|
417
|
match = re.search(r'duplicate key value violates unique constraint '
|
418
|
r'"((_?[^\W_]+)_.+?)"', msg)
|
419
|
if match:
|
420
|
constraint, table = match.groups()
|
421
|
try: cols = index_cols(db, table, constraint)
|
422
|
except NotImplementedError: raise e
|
423
|
else: raise DuplicateKeyException(constraint, cols, e)
|
424
|
|
425
|
match = re.search(r'null value in column "(.+?)" violates not-null'
|
426
|
r' constraint', msg)
|
427
|
if match: raise NullValueException('NOT NULL', [match.group(1)], e)
|
428
|
|
429
|
match = re.search(r'\b(?:invalid input (?:syntax|value)\b.*?'
|
430
|
r'|date/time field value out of range): "(.+?)"\n'
|
431
|
r'(?:(?s).*?)\bfunction "(.+?)"', msg)
|
432
|
if match:
|
433
|
value, name = match.groups()
|
434
|
raise FunctionValueException(name, strings.to_unicode(value), e)
|
435
|
|
436
|
match = re.search(r'column "(.+?)" is of type (.+?) but expression '
|
437
|
r'is of type', msg)
|
438
|
if match:
|
439
|
col, type_ = match.groups()
|
440
|
raise MissingCastException(type_, col, e)
|
441
|
|
442
|
match = re.search(r'relation "(.+?)" already exists', msg)
|
443
|
if match: raise DuplicateTableException(match.group(1), e)
|
444
|
|
445
|
match = re.search(r'function "(.+?)" already exists', msg)
|
446
|
if match: raise DuplicateFunctionException(match.group(1), e)
|
447
|
|
448
|
raise # no specific exception raised
|
449
|
except log_ignore_excs:
|
450
|
log_level += 2
|
451
|
raise
|
452
|
finally:
|
453
|
if debug_msg_ref != None and debug_msg_ref[0] != None:
|
454
|
db.log_debug(debug_msg_ref[0], log_level)
|
455
|
|
456
|
##### Basic queries
|
457
|
|
458
|
def next_version(name):
|
459
|
version = 1 # first existing name was version 0
|
460
|
match = re.match(r'^(.*)#(\d+)$', name)
|
461
|
if match:
|
462
|
name, version = match.groups()
|
463
|
version = int(version)+1
|
464
|
return sql_gen.add_suffix(name, '#'+str(version))
|
465
|
|
466
|
def run_query_into(db, query, into=None, add_indexes_=False, **kw_args):
|
467
|
'''Outputs a query to a temp table.
|
468
|
For params, see run_query().
|
469
|
'''
|
470
|
if into == None: return run_query(db, query, **kw_args)
|
471
|
|
472
|
assert isinstance(into, sql_gen.Table)
|
473
|
|
474
|
kw_args['recover'] = True
|
475
|
kw_args.setdefault('log_ignore_excs', (DuplicateTableException,))
|
476
|
|
477
|
temp = not db.autocommit # tables are permanent in autocommit mode
|
478
|
# "temporary tables cannot specify a schema name", so remove schema
|
479
|
if temp: into.schema = None
|
480
|
|
481
|
# Create table
|
482
|
while True:
|
483
|
create_query = 'CREATE'
|
484
|
if temp: create_query += ' TEMP'
|
485
|
create_query += ' TABLE '+into.to_str(db)+' AS\n'+query
|
486
|
|
487
|
try:
|
488
|
cur = run_query(db, create_query, **kw_args)
|
489
|
# CREATE TABLE AS sets rowcount to # rows in query
|
490
|
break
|
491
|
except DuplicateTableException, e:
|
492
|
into.name = next_version(into.name)
|
493
|
# try again with next version of name
|
494
|
|
495
|
if add_indexes_: add_indexes(db, into)
|
496
|
|
497
|
return cur
|
498
|
|
499
|
order_by_pkey = object() # tells mk_select() to order by the pkey
|
500
|
|
501
|
distinct_on_all = object() # tells mk_select() to SELECT DISTINCT ON all columns
|
502
|
|
503
|
def mk_select(db, tables, fields=None, conds=None, distinct_on=[], limit=None,
|
504
|
start=None, order_by=order_by_pkey, default_table=None):
|
505
|
'''
|
506
|
@param tables The single table to select from, or a list of tables to join
|
507
|
together, with tables after the first being sql_gen.Join objects
|
508
|
@param fields Use None to select all fields in the table
|
509
|
@param conds WHERE conditions: [(compare_left_side, compare_right_side),...]
|
510
|
* container can be any iterable type
|
511
|
* compare_left_side: sql_gen.Code|str (for col name)
|
512
|
* compare_right_side: sql_gen.ValueCond|literal value
|
513
|
@param distinct_on The columns to SELECT DISTINCT ON, or distinct_on_all to
|
514
|
use all columns
|
515
|
@return query
|
516
|
'''
|
517
|
# Parse tables param
|
518
|
if not lists.is_seq(tables): tables = [tables]
|
519
|
tables = list(tables) # don't modify input! (list() copies input)
|
520
|
table0 = sql_gen.as_Table(tables.pop(0)) # first table is separate
|
521
|
|
522
|
# Parse other params
|
523
|
if conds == None: conds = []
|
524
|
elif dicts.is_dict(conds): conds = conds.items()
|
525
|
conds = list(conds) # don't modify input! (list() copies input)
|
526
|
assert limit == None or type(limit) == int
|
527
|
assert start == None or type(start) == int
|
528
|
if order_by is order_by_pkey:
|
529
|
if distinct_on != []: order_by = None
|
530
|
else: order_by = pkey(db, table0, recover=True)
|
531
|
|
532
|
query = 'SELECT'
|
533
|
|
534
|
def parse_col(col): return sql_gen.as_Col(col, default_table).to_str(db)
|
535
|
|
536
|
# DISTINCT ON columns
|
537
|
if distinct_on != []:
|
538
|
query += '\nDISTINCT'
|
539
|
if distinct_on is not distinct_on_all:
|
540
|
query += ' ON ('+(', '.join(map(parse_col, distinct_on)))+')'
|
541
|
|
542
|
# Columns
|
543
|
query += '\n'
|
544
|
if fields == None: query += '*'
|
545
|
else:
|
546
|
assert fields != []
|
547
|
query += '\n, '.join(map(parse_col, fields))
|
548
|
|
549
|
# Main table
|
550
|
query += '\nFROM '+table0.to_str(db)
|
551
|
|
552
|
# Add joins
|
553
|
left_table = table0
|
554
|
for join_ in tables:
|
555
|
table = join_.table
|
556
|
|
557
|
# Parse special values
|
558
|
if join_.type_ is sql_gen.filter_out: # filter no match
|
559
|
conds.append((sql_gen.Col(table_not_null_col(db, table), table),
|
560
|
None))
|
561
|
|
562
|
query += '\n'+join_.to_str(db, left_table)
|
563
|
|
564
|
left_table = table
|
565
|
|
566
|
missing = True
|
567
|
if conds != []:
|
568
|
if len(conds) == 1: whitespace = ' '
|
569
|
else: whitespace = '\n'
|
570
|
query += '\n'+sql_gen.combine_conds([sql_gen.ColValueCond(l, r)
|
571
|
.to_str(db) for l, r in conds], 'WHERE')
|
572
|
missing = False
|
573
|
if order_by != None:
|
574
|
query += '\nORDER BY '+sql_gen.as_Col(order_by, table0).to_str(db)
|
575
|
if limit != None: query += '\nLIMIT '+str(limit); missing = False
|
576
|
if start != None:
|
577
|
if start != 0: query += '\nOFFSET '+str(start)
|
578
|
missing = False
|
579
|
if missing: warnings.warn(DbWarning(
|
580
|
'SELECT statement missing a WHERE, LIMIT, or OFFSET clause: '+query))
|
581
|
|
582
|
return query
|
583
|
|
584
|
def select(db, *args, **kw_args):
|
585
|
'''For params, see mk_select() and run_query()'''
|
586
|
recover = kw_args.pop('recover', None)
|
587
|
cacheable = kw_args.pop('cacheable', True)
|
588
|
log_level = kw_args.pop('log_level', 2)
|
589
|
|
590
|
return run_query(db, mk_select(db, *args, **kw_args), recover, cacheable,
|
591
|
log_level=log_level)
|
592
|
|
593
|
def mk_insert_select(db, table, cols=None, select_query=None, returning=None,
|
594
|
embeddable=False):
|
595
|
'''
|
596
|
@param returning str|None An inserted column (such as pkey) to return
|
597
|
@param embeddable Whether the query should be embeddable as a nested SELECT.
|
598
|
Warning: If you set this and cacheable=True when the query is run, the
|
599
|
query will be fully cached, not just if it raises an exception.
|
600
|
'''
|
601
|
table = sql_gen.remove_table_rename(sql_gen.as_Table(table))
|
602
|
if cols == []: cols = None # no cols (all defaults) = unknown col names
|
603
|
if cols != None:
|
604
|
cols = [sql_gen.to_name_only_col(v, table).to_str(db) for v in cols]
|
605
|
if select_query == None: select_query = 'DEFAULT VALUES'
|
606
|
if returning != None: returning = sql_gen.as_Col(returning, table)
|
607
|
|
608
|
# Build query
|
609
|
first_line = 'INSERT INTO '+table.to_str(db)
|
610
|
query = first_line
|
611
|
if cols != None: query += '\n('+', '.join(cols)+')'
|
612
|
query += '\n'+select_query
|
613
|
|
614
|
if returning != None:
|
615
|
query += '\nRETURNING '+sql_gen.to_name_only_col(returning).to_str(db)
|
616
|
|
617
|
if embeddable:
|
618
|
assert returning != None
|
619
|
|
620
|
# Create function
|
621
|
function_name = sql_gen.clean_name(first_line)
|
622
|
return_type = 'SETOF '+returning.to_str(db)+'%TYPE'
|
623
|
while True:
|
624
|
try:
|
625
|
function = sql_gen.TempFunction(function_name, db.autocommit)
|
626
|
|
627
|
function_query = '''\
|
628
|
CREATE FUNCTION '''+function.to_str(db)+'''()
|
629
|
RETURNS '''+return_type+'''
|
630
|
LANGUAGE sql
|
631
|
AS $$
|
632
|
'''+query+''';
|
633
|
$$;
|
634
|
'''
|
635
|
run_query(db, function_query, recover=True, cacheable=True,
|
636
|
log_ignore_excs=(DuplicateFunctionException,))
|
637
|
break # this version was successful
|
638
|
except DuplicateFunctionException, e:
|
639
|
function_name = next_version(function_name)
|
640
|
# try again with next version of name
|
641
|
|
642
|
# Return query that uses function
|
643
|
func_table = sql_gen.NamedTable('f', sql_gen.FunctionCall(function),
|
644
|
[returning]) # AS clause requires function alias
|
645
|
return mk_select(db, func_table, start=0, order_by=None)
|
646
|
|
647
|
return query
|
648
|
|
649
|
def insert_select(db, *args, **kw_args):
|
650
|
'''For params, see mk_insert_select() and run_query_into()
|
651
|
@param into sql_gen.Table with suggested name of temp table to put RETURNING
|
652
|
values in
|
653
|
'''
|
654
|
into = kw_args.pop('into', None)
|
655
|
if into != None: kw_args['embeddable'] = True
|
656
|
recover = kw_args.pop('recover', None)
|
657
|
cacheable = kw_args.pop('cacheable', True)
|
658
|
log_level = kw_args.pop('log_level', 2)
|
659
|
|
660
|
return run_query_into(db, mk_insert_select(db, *args, **kw_args), into,
|
661
|
recover=recover, cacheable=cacheable, log_level=log_level)
|
662
|
|
663
|
default = sql_gen.default # tells insert() to use the default value for a column
|
664
|
|
665
|
def insert(db, table, row, *args, **kw_args):
|
666
|
'''For params, see insert_select()'''
|
667
|
if lists.is_seq(row): cols = None
|
668
|
else:
|
669
|
cols = row.keys()
|
670
|
row = row.values()
|
671
|
row = list(row) # ensure that "== []" works
|
672
|
|
673
|
if row == []: query = None
|
674
|
else: query = sql_gen.Values(row).to_str(db)
|
675
|
|
676
|
return insert_select(db, table, cols, query, *args, **kw_args)
|
677
|
|
678
|
def mk_update(db, table, changes=None, cond=None):
|
679
|
'''
|
680
|
@param changes [(col, new_value),...]
|
681
|
* container can be any iterable type
|
682
|
* col: sql_gen.Code|str (for col name)
|
683
|
* new_value: sql_gen.Code|literal value
|
684
|
@param cond sql_gen.Code WHERE condition. e.g. use sql_gen.*Cond objects.
|
685
|
@return str query
|
686
|
'''
|
687
|
query = 'UPDATE '+sql_gen.as_Table(table).to_str(db)+'\nSET\n'
|
688
|
query += ',\n'.join((sql_gen.to_name_only_col(col, table).to_str(db)+' = '
|
689
|
+sql_gen.as_Value(new_value).to_str(db) for col, new_value in changes))
|
690
|
if cond != None: query += '\nWHERE\n'+cond.to_str(db)
|
691
|
|
692
|
return query
|
693
|
|
694
|
def update(db, *args, **kw_args):
|
695
|
'''For params, see mk_update() and run_query()'''
|
696
|
recover = kw_args.pop('recover', None)
|
697
|
|
698
|
return run_query(db, mk_update(db, *args, **kw_args), recover)
|
699
|
|
700
|
def last_insert_id(db):
|
701
|
module = util.root_module(db.db)
|
702
|
if module == 'psycopg2': return value(run_query(db, 'SELECT lastval()'))
|
703
|
elif module == 'MySQLdb': return db.insert_id()
|
704
|
else: return None
|
705
|
|
706
|
def mk_flatten_mapping(db, into, cols, preserve=[], as_items=False):
|
707
|
'''Creates a mapping from original column names (which may have collisions)
|
708
|
to names that will be distinct among the columns' tables.
|
709
|
This is meant to be used for several tables that are being joined together.
|
710
|
@param cols The columns to combine. Duplicates will be removed.
|
711
|
@param into The table for the new columns.
|
712
|
@param preserve [sql_gen.Col...] Columns not to rename. Note that these
|
713
|
columns will be included in the mapping even if they are not in cols.
|
714
|
The tables of the provided Col objects will be changed to into, so make
|
715
|
copies of them if you want to keep the original tables.
|
716
|
@param as_items Whether to return a list of dict items instead of a dict
|
717
|
@return dict(orig_col=new_col, ...)
|
718
|
* orig_col: sql_gen.Col(orig_col_name, orig_table)
|
719
|
* new_col: sql_gen.Col(orig_col_name, into)
|
720
|
* All mappings use the into table so its name can easily be
|
721
|
changed for all columns at once
|
722
|
'''
|
723
|
cols = lists.uniqify(cols)
|
724
|
|
725
|
items = []
|
726
|
for col in preserve:
|
727
|
orig_col = copy.copy(col)
|
728
|
col.table = into
|
729
|
items.append((orig_col, col))
|
730
|
preserve = set(preserve)
|
731
|
for col in cols:
|
732
|
if col not in preserve:
|
733
|
items.append((col, sql_gen.Col(str(col), into, col.srcs)))
|
734
|
|
735
|
if not as_items: items = dict(items)
|
736
|
return items
|
737
|
|
738
|
def flatten(db, into, joins, cols, limit=None, start=None, **kw_args):
|
739
|
'''For params, see mk_flatten_mapping()
|
740
|
@return See return value of mk_flatten_mapping()
|
741
|
'''
|
742
|
items = mk_flatten_mapping(db, into, cols, as_items=True, **kw_args)
|
743
|
cols = [sql_gen.NamedCol(new.name, old) for old, new in items]
|
744
|
run_query_into(db, mk_select(db, joins, cols, limit=limit, start=start),
|
745
|
into=into)
|
746
|
return dict(items)
|
747
|
|
748
|
def mk_track_data_error(db, errors_table, cols, value, error_code, error):
|
749
|
assert cols != ()
|
750
|
|
751
|
cols = map(sql_gen.to_name_only_col, cols)
|
752
|
|
753
|
columns_cols = ['column']
|
754
|
columns = sql_gen.NamedValues('columns', columns_cols,
|
755
|
[[c.name] for c in cols])
|
756
|
values_cols = ['value', 'error_code', 'error']
|
757
|
values = sql_gen.NamedValues('values', values_cols,
|
758
|
[value, error_code, error])
|
759
|
|
760
|
select_cols = columns_cols+values_cols
|
761
|
name_only_cols = map(sql_gen.to_name_only_col, select_cols)
|
762
|
errors_table = sql_gen.NamedTable('errors', errors_table)
|
763
|
joins = [columns, sql_gen.Join(values, type_='CROSS'),
|
764
|
sql_gen.Join(errors_table, dict(zip(name_only_cols, select_cols)),
|
765
|
sql_gen.filter_out)]
|
766
|
|
767
|
return mk_insert_select(db, errors_table, name_only_cols,
|
768
|
mk_select(db, joins, select_cols, order_by=None))
|
769
|
|
770
|
def track_data_error(db, errors_table, cols, *args, **kw_args):
|
771
|
'''
|
772
|
@param errors_table If None, does nothing.
|
773
|
'''
|
774
|
if errors_table == None or cols == (): return
|
775
|
run_query(db, mk_track_data_error(db, errors_table, cols, *args, **kw_args),
|
776
|
cacheable=True, log_level=4)
|
777
|
|
778
|
def cast(db, type_, col, errors_table=None):
|
779
|
'''Casts an (unrenamed) column or value.
|
780
|
If errors_table set and col has srcs, saves errors in errors_table (using
|
781
|
col's srcs attr as the source columns) and converts errors to warnings.
|
782
|
@param col str|sql_gen.Col|sql_gen.Literal
|
783
|
@param errors_table None|sql_gen.Table|str
|
784
|
'''
|
785
|
col = sql_gen.as_Col(col)
|
786
|
save_errors = (errors_table != None and isinstance(col, sql_gen.Col)
|
787
|
and col.srcs != ())
|
788
|
if not save_errors: # can't save errors
|
789
|
return sql_gen.CustomCode(col.to_str(db)+'::'+type_) # just cast
|
790
|
|
791
|
assert not isinstance(col, sql_gen.NamedCol)
|
792
|
|
793
|
errors_table = sql_gen.as_Table(errors_table)
|
794
|
srcs = map(sql_gen.to_name_only_col, col.srcs)
|
795
|
function_name = str(sql_gen.FunctionCall(type_, *srcs))
|
796
|
function = sql_gen.TempFunction(function_name, db.autocommit)
|
797
|
|
798
|
while True:
|
799
|
# Create function definition
|
800
|
query = '''\
|
801
|
CREATE FUNCTION '''+function.to_str(db)+'''(value text)
|
802
|
RETURNS '''+type_+'''
|
803
|
LANGUAGE plpgsql
|
804
|
STRICT
|
805
|
AS $$
|
806
|
BEGIN
|
807
|
/* The explicit cast to the return type is needed to make the cast happen
|
808
|
inside the try block. (Implicit casts to the return type happen at the end
|
809
|
of the function, outside any block.) */
|
810
|
RETURN value::'''+type_+''';
|
811
|
EXCEPTION
|
812
|
WHEN data_exception THEN
|
813
|
-- Save error in errors table.
|
814
|
-- Insert the value and error for *each* source column.
|
815
|
'''+mk_track_data_error(db, errors_table, srcs,
|
816
|
*map(sql_gen.CustomCode, ['value', 'SQLSTATE', 'SQLERRM']))+''';
|
817
|
|
818
|
RAISE WARNING '%', SQLERRM;
|
819
|
RETURN NULL;
|
820
|
END;
|
821
|
$$;
|
822
|
'''
|
823
|
|
824
|
# Create function
|
825
|
try:
|
826
|
run_query(db, query, recover=True, cacheable=True,
|
827
|
log_ignore_excs=(DuplicateFunctionException,))
|
828
|
break # successful
|
829
|
except DuplicateFunctionException:
|
830
|
function.name = next_version(function.name)
|
831
|
# try again with next version of name
|
832
|
|
833
|
return sql_gen.FunctionCall(function, col)
|
834
|
|
835
|
##### Database structure queries
|
836
|
|
837
|
def table_row_count(db, table, recover=None):
|
838
|
return value(run_query(db, mk_select(db, table, [sql_gen.row_count],
|
839
|
order_by=None, start=0), recover=recover, log_level=3))
|
840
|
|
841
|
def table_cols(db, table, recover=None):
|
842
|
return list(col_names(select(db, table, limit=0, order_by=None,
|
843
|
recover=recover, log_level=4)))
|
844
|
|
845
|
def pkey(db, table, recover=None):
|
846
|
'''Assumed to be first column in table'''
|
847
|
return table_cols(db, table, recover)[0]
|
848
|
|
849
|
not_null_col = 'not_null_col'
|
850
|
|
851
|
def table_not_null_col(db, table, recover=None):
|
852
|
'''Name assumed to be the value of not_null_col. If not found, uses pkey.'''
|
853
|
if not_null_col in table_cols(db, table, recover): return not_null_col
|
854
|
else: return pkey(db, table, recover)
|
855
|
|
856
|
def index_cols(db, table, index):
|
857
|
'''Can also use this for UNIQUE constraints, because a UNIQUE index is
|
858
|
automatically created. When you don't know whether something is a UNIQUE
|
859
|
constraint or a UNIQUE index, use this function.'''
|
860
|
module = util.root_module(db.db)
|
861
|
if module == 'psycopg2':
|
862
|
return list(values(run_query(db, '''\
|
863
|
SELECT attname
|
864
|
FROM
|
865
|
(
|
866
|
SELECT attnum, attname
|
867
|
FROM pg_index
|
868
|
JOIN pg_class index ON index.oid = indexrelid
|
869
|
JOIN pg_class table_ ON table_.oid = indrelid
|
870
|
JOIN pg_attribute ON attrelid = indrelid AND attnum = ANY (indkey)
|
871
|
WHERE
|
872
|
table_.relname = '''+db.esc_value(table)+'''
|
873
|
AND index.relname = '''+db.esc_value(index)+'''
|
874
|
UNION
|
875
|
SELECT attnum, attname
|
876
|
FROM
|
877
|
(
|
878
|
SELECT
|
879
|
indrelid
|
880
|
, (regexp_matches(indexprs, E':varattno (\\\\d+)', 'g'))[1]::int
|
881
|
AS indkey
|
882
|
FROM pg_index
|
883
|
JOIN pg_class index ON index.oid = indexrelid
|
884
|
JOIN pg_class table_ ON table_.oid = indrelid
|
885
|
WHERE
|
886
|
table_.relname = '''+db.esc_value(table)+'''
|
887
|
AND index.relname = '''+db.esc_value(index)+'''
|
888
|
) s
|
889
|
JOIN pg_attribute ON attrelid = indrelid AND attnum = indkey
|
890
|
) s
|
891
|
ORDER BY attnum
|
892
|
'''
|
893
|
, cacheable=True, log_level=4)))
|
894
|
else: raise NotImplementedError("Can't list index columns for "+module+
|
895
|
' database')
|
896
|
|
897
|
def constraint_cols(db, table, constraint):
|
898
|
module = util.root_module(db.db)
|
899
|
if module == 'psycopg2':
|
900
|
return list(values(run_query(db, '''\
|
901
|
SELECT attname
|
902
|
FROM pg_constraint
|
903
|
JOIN pg_class ON pg_class.oid = conrelid
|
904
|
JOIN pg_attribute ON attrelid = conrelid AND attnum = ANY (conkey)
|
905
|
WHERE
|
906
|
relname = '''+db.esc_value(table)+'''
|
907
|
AND conname = '''+db.esc_value(constraint)+'''
|
908
|
ORDER BY attnum
|
909
|
'''
|
910
|
)))
|
911
|
else: raise NotImplementedError("Can't list constraint columns for "+module+
|
912
|
' database')
|
913
|
|
914
|
row_num_col = '_row_num'
|
915
|
|
916
|
def add_index(db, exprs, table=None, unique=False):
|
917
|
'''Adds an index on column(s) or expression(s) if it doesn't already exist.
|
918
|
Currently, only function calls are supported as expressions.
|
919
|
'''
|
920
|
if not lists.is_seq(exprs): exprs = [exprs]
|
921
|
|
922
|
# Parse exprs
|
923
|
old_exprs = exprs[:]
|
924
|
exprs = []
|
925
|
cols = []
|
926
|
for i, expr in enumerate(old_exprs):
|
927
|
expr = copy.deepcopy(expr) # don't modify input!
|
928
|
expr = sql_gen.as_Col(expr, table)
|
929
|
|
930
|
# Handle nullable columns
|
931
|
expr = sql_gen.ensure_not_null(db, expr)
|
932
|
|
933
|
# Extract col
|
934
|
if isinstance(expr, sql_gen.FunctionCall):
|
935
|
col = expr.args[0]
|
936
|
expr = sql_gen.Expr(expr)
|
937
|
else: col = expr
|
938
|
assert isinstance(col, sql_gen.Col)
|
939
|
|
940
|
# Extract table
|
941
|
if table == None:
|
942
|
assert sql_gen.is_table_col(col)
|
943
|
table = col.table
|
944
|
|
945
|
col.table = None
|
946
|
|
947
|
exprs.append(expr)
|
948
|
cols.append(col)
|
949
|
|
950
|
table = sql_gen.as_Table(table)
|
951
|
index = sql_gen.Table(str(sql_gen.Col(','.join(map(str, cols)), table)))
|
952
|
|
953
|
str_ = 'CREATE'
|
954
|
if unique: str_ += ' UNIQUE'
|
955
|
str_ += ' INDEX '+index.to_str(db)+' ON '+table.to_str(db)+' ('+(
|
956
|
', '.join((v.to_str(db) for v in exprs)))+')'
|
957
|
|
958
|
try: run_query(db, str_, recover=True, cacheable=True, log_level=3)
|
959
|
except DuplicateTableException: pass # index already existed
|
960
|
|
961
|
def add_pkey(db, table, cols=None, recover=None):
|
962
|
'''Adds a primary key.
|
963
|
@param cols [sql_gen.Col,...] The columns in the primary key.
|
964
|
Defaults to the first column in the table.
|
965
|
@pre The table must not already have a primary key.
|
966
|
'''
|
967
|
table = sql_gen.as_Table(table)
|
968
|
if cols == None: cols = [pkey(db, table, recover)]
|
969
|
col_strs = [sql_gen.to_name_only_col(v).to_str(db) for v in cols]
|
970
|
|
971
|
run_query(db, 'ALTER TABLE '+table.to_str(db)+' ADD PRIMARY KEY ('
|
972
|
+(', '.join(col_strs))+')', recover=True, cacheable=True, log_level=3,
|
973
|
log_ignore_excs=(DuplicateTableException,))
|
974
|
|
975
|
already_indexed = object() # tells add_indexes() the pkey has already been added
|
976
|
|
977
|
def add_indexes(db, table, has_pkey=True):
|
978
|
'''Adds an index on all columns in a table.
|
979
|
@param has_pkey bool|already_indexed Whether a pkey instead of a regular
|
980
|
index should be added on the first column.
|
981
|
* If already_indexed, the pkey is assumed to have already been added
|
982
|
'''
|
983
|
cols = table_cols(db, table)
|
984
|
if has_pkey:
|
985
|
if has_pkey is not already_indexed: add_pkey(db, table)
|
986
|
cols = cols[1:]
|
987
|
for col in cols: add_index(db, col, table)
|
988
|
|
989
|
def add_row_num(db, table):
|
990
|
'''Adds a row number column to a table. Its name is in row_num_col. It will
|
991
|
be the primary key.'''
|
992
|
table = sql_gen.as_Table(table).to_str(db)
|
993
|
run_query(db, 'ALTER TABLE '+table+' ADD COLUMN '+row_num_col
|
994
|
+' serial NOT NULL PRIMARY KEY', log_level=3)
|
995
|
|
996
|
def create_table(db, table, cols, has_pkey=True, col_indexes=True):
|
997
|
'''Creates a table.
|
998
|
@param cols [sql_gen.TypedCol,...] The column names and types
|
999
|
@param has_pkey If set, the first column becomes the primary key.
|
1000
|
@param col_indexes bool|[ref]
|
1001
|
* If True, indexes will be added on all non-pkey columns.
|
1002
|
* If a list reference, [0] will be set to a function to do this.
|
1003
|
This can be used to delay index creation until the table is populated.
|
1004
|
'''
|
1005
|
table = sql_gen.as_Table(table)
|
1006
|
|
1007
|
if has_pkey:
|
1008
|
cols[0] = pkey = copy.copy(cols[0]) # don't modify input!
|
1009
|
pkey.type += ' NOT NULL PRIMARY KEY'
|
1010
|
|
1011
|
str_ = 'CREATE TABLE '+table.to_str(db)+' (\n'
|
1012
|
str_ += '\n, '.join(v.to_str(db) for v in cols)
|
1013
|
str_ += '\n);\n'
|
1014
|
run_query(db, str_, cacheable=True, log_level=2)
|
1015
|
|
1016
|
# Add indexes
|
1017
|
if has_pkey: has_pkey = already_indexed
|
1018
|
def add_indexes_(): add_indexes(db, table, has_pkey)
|
1019
|
if isinstance(col_indexes, list): col_indexes[0] = add_indexes_ # defer
|
1020
|
elif col_indexes: add_indexes_() # add now
|
1021
|
|
1022
|
def vacuum(db, table):
|
1023
|
table = sql_gen.as_Table(table)
|
1024
|
db.with_autocommit(lambda: run_query(db, 'VACUUM ANALYZE '+table.to_str(db),
|
1025
|
log_level=3))
|
1026
|
|
1027
|
def truncate(db, table, schema='public'):
|
1028
|
table = sql_gen.as_Table(table, schema)
|
1029
|
return run_query(db, 'TRUNCATE '+table.to_str(db)+' CASCADE')
|
1030
|
|
1031
|
def tables(db, schema_like='public', table_like='%', exact=False):
|
1032
|
if exact: compare = '='
|
1033
|
else: compare = 'LIKE'
|
1034
|
|
1035
|
module = util.root_module(db.db)
|
1036
|
if module == 'psycopg2':
|
1037
|
conds = [('schemaname', sql_gen.CompareCond(schema_like, compare)),
|
1038
|
('tablename', sql_gen.CompareCond(table_like, compare))]
|
1039
|
return values(select(db, 'pg_tables', ['tablename'], conds,
|
1040
|
order_by='tablename', log_level=4))
|
1041
|
elif module == 'MySQLdb':
|
1042
|
return values(run_query(db, 'SHOW TABLES LIKE '+db.esc_value(table_like)
|
1043
|
, cacheable=True, log_level=4))
|
1044
|
else: raise NotImplementedError("Can't list tables for "+module+' database')
|
1045
|
|
1046
|
def table_exists(db, table):
|
1047
|
table = sql_gen.as_Table(table)
|
1048
|
return list(tables(db, table.schema, table.name, exact=True)) != []
|
1049
|
|
1050
|
def errors_table(db, table, if_exists=True):
|
1051
|
'''
|
1052
|
@param if_exists If set, returns None if the errors table doesn't exist
|
1053
|
@return None|sql_gen.Table
|
1054
|
'''
|
1055
|
table = sql_gen.as_Table(table)
|
1056
|
if table.srcs != (): table = table.srcs[0]
|
1057
|
|
1058
|
errors_table = sql_gen.suffixed_table(table, '.errors')
|
1059
|
if if_exists and not table_exists(db, errors_table): return None
|
1060
|
return errors_table
|
1061
|
|
1062
|
##### Database management
|
1063
|
|
1064
|
def empty_db(db, schema='public', **kw_args):
|
1065
|
'''For kw_args, see tables()'''
|
1066
|
for table in tables(db, schema, **kw_args): truncate(db, table, schema)
|
1067
|
|
1068
|
##### Heuristic queries
|
1069
|
|
1070
|
def put(db, table, row, pkey_=None, row_ct_ref=None):
|
1071
|
'''Recovers from errors.
|
1072
|
Only works under PostgreSQL (uses INSERT RETURNING).
|
1073
|
'''
|
1074
|
row = sql_gen.ColDict(db, table, row)
|
1075
|
if pkey_ == None: pkey_ = pkey(db, table, recover=True)
|
1076
|
|
1077
|
try:
|
1078
|
cur = insert(db, table, row, pkey_, recover=True)
|
1079
|
if row_ct_ref != None and cur.rowcount >= 0:
|
1080
|
row_ct_ref[0] += cur.rowcount
|
1081
|
return value(cur)
|
1082
|
except DuplicateKeyException, e:
|
1083
|
row = sql_gen.ColDict(db, table,
|
1084
|
util.dict_subset_right_join(row, e.cols))
|
1085
|
return value(select(db, table, [pkey_], row, recover=True))
|
1086
|
|
1087
|
def get(db, table, row, pkey, row_ct_ref=None, create=False):
|
1088
|
'''Recovers from errors'''
|
1089
|
try: return value(select(db, table, [pkey], row, limit=1, recover=True))
|
1090
|
except StopIteration:
|
1091
|
if not create: raise
|
1092
|
return put(db, table, row, pkey, row_ct_ref) # insert new row
|
1093
|
|
1094
|
def is_func_result(col):
|
1095
|
return col.table.name.find('(') >= 0 and col.name == 'result'
|
1096
|
|
1097
|
def into_table_name(out_table, in_tables0, mapping, is_func):
|
1098
|
def in_col_str(in_col):
|
1099
|
in_col = sql_gen.remove_col_rename(in_col)
|
1100
|
if isinstance(in_col, sql_gen.Col):
|
1101
|
table = in_col.table
|
1102
|
if table == in_tables0:
|
1103
|
in_col = sql_gen.to_name_only_col(in_col)
|
1104
|
elif is_func_result(in_col): in_col = table # omit col name
|
1105
|
return str(in_col)
|
1106
|
|
1107
|
str_ = str(out_table)
|
1108
|
if is_func:
|
1109
|
str_ += '('
|
1110
|
|
1111
|
try: value_in_col = mapping['value']
|
1112
|
except KeyError:
|
1113
|
str_ += ', '.join((str(k)+'='+in_col_str(v)
|
1114
|
for k, v in mapping.iteritems()))
|
1115
|
else: str_ += in_col_str(value_in_col)
|
1116
|
|
1117
|
str_ += ')'
|
1118
|
else:
|
1119
|
out_col = 'rank'
|
1120
|
try: in_col = mapping[out_col]
|
1121
|
except KeyError: str_ += '_pkeys'
|
1122
|
else: # has a rank column, so hierarchical
|
1123
|
str_ += '['+str(out_col)+'='+in_col_str(in_col)+']'
|
1124
|
return str_
|
1125
|
|
1126
|
def put_table(db, out_table, in_tables, mapping, row_ct_ref=None, into=None,
|
1127
|
default=None, is_func=False, on_error=exc.raise_):
|
1128
|
'''Recovers from errors.
|
1129
|
Only works under PostgreSQL (uses INSERT RETURNING).
|
1130
|
@param in_tables The main input table to select from, followed by a list of
|
1131
|
tables to join with it using the main input table's pkey
|
1132
|
@param mapping dict(out_table_col=in_table_col, ...)
|
1133
|
* out_table_col: str (*not* sql_gen.Col)
|
1134
|
* in_table_col: sql_gen.Col|literal-value
|
1135
|
@param into The table to contain the output and input pkeys.
|
1136
|
Defaults to `out_table.name+'_pkeys'`.
|
1137
|
@param default The *output* column to use as the pkey for missing rows.
|
1138
|
If this output column does not exist in the mapping, uses None.
|
1139
|
@param is_func Whether out_table is the name of a SQL function, not a table
|
1140
|
@return sql_gen.Col Where the output pkeys are made available
|
1141
|
'''
|
1142
|
out_table = sql_gen.as_Table(out_table)
|
1143
|
|
1144
|
def log_debug(msg): db.log_debug(msg, level=1.5)
|
1145
|
def col_ustr(str_):
|
1146
|
return strings.repr_no_u(sql_gen.remove_col_rename(str_))
|
1147
|
|
1148
|
out_pkey = pkey(db, out_table, recover=True)
|
1149
|
out_pkey_col = sql_gen.as_Col(out_pkey, out_table)
|
1150
|
|
1151
|
if mapping == {}: # need at least one column for INSERT SELECT
|
1152
|
mapping = {out_pkey: None} # ColDict will replace with default value
|
1153
|
|
1154
|
log_debug('********** New iteration **********')
|
1155
|
log_debug('Inserting these input columns into '+strings.as_tt(
|
1156
|
out_table.to_str(db))+':\n'+strings.as_table(mapping, ustr=col_ustr))
|
1157
|
|
1158
|
# Create input joins from list of input tables
|
1159
|
in_tables_ = in_tables[:] # don't modify input!
|
1160
|
in_tables0 = in_tables_.pop(0) # first table is separate
|
1161
|
errors_table_ = errors_table(db, in_tables0)
|
1162
|
in_pkey = pkey(db, in_tables0, recover=True)
|
1163
|
in_pkey_col = sql_gen.as_Col(in_pkey, in_tables0)
|
1164
|
input_joins = [in_tables0]+[sql_gen.Join(v,
|
1165
|
{in_pkey: sql_gen.join_same_not_null}) for v in in_tables_]
|
1166
|
|
1167
|
if into == None:
|
1168
|
into = into_table_name(out_table, in_tables0, mapping, is_func)
|
1169
|
into = sql_gen.as_Table(into)
|
1170
|
|
1171
|
# Set column sources
|
1172
|
in_cols = filter(sql_gen.is_table_col, mapping.values())
|
1173
|
for col in in_cols:
|
1174
|
if col.table == in_tables0: col.set_srcs(sql_gen.src_self)
|
1175
|
|
1176
|
log_debug('Joining together input tables into temp table')
|
1177
|
# Place in new table for speed and so don't modify input if values edited
|
1178
|
in_table = sql_gen.Table('in')
|
1179
|
mapping = dicts.join(mapping, flatten(db, in_table, input_joins, in_cols,
|
1180
|
preserve=[in_pkey_col], start=0))
|
1181
|
input_joins = [in_table]
|
1182
|
db.log_debug('Temp table: '+strings.as_tt(in_table.to_str(db)), level=2)
|
1183
|
|
1184
|
mapping = sql_gen.ColDict(db, out_table, mapping)
|
1185
|
# after applying dicts.join() because that returns a plain dict
|
1186
|
|
1187
|
# Resolve default value column
|
1188
|
try: default = mapping[default]
|
1189
|
except KeyError:
|
1190
|
if default != None:
|
1191
|
db.log_debug('Default value column '
|
1192
|
+strings.as_tt(strings.repr_no_u(default))
|
1193
|
+' does not exist in mapping, falling back to None', level=2.1)
|
1194
|
default = None
|
1195
|
|
1196
|
pkeys_names = [in_pkey, out_pkey]
|
1197
|
pkeys_cols = [in_pkey_col, out_pkey_col]
|
1198
|
|
1199
|
pkeys_table_exists_ref = [False]
|
1200
|
def insert_into_pkeys(joins, cols):
|
1201
|
query = mk_select(db, joins, cols, order_by=None, start=0)
|
1202
|
if pkeys_table_exists_ref[0]:
|
1203
|
insert_select(db, into, pkeys_names, query)
|
1204
|
else:
|
1205
|
run_query_into(db, query, into=into)
|
1206
|
pkeys_table_exists_ref[0] = True
|
1207
|
|
1208
|
limit_ref = [None]
|
1209
|
conds = set()
|
1210
|
distinct_on = sql_gen.ColDict(db, out_table)
|
1211
|
def mk_main_select(joins, cols):
|
1212
|
distinct_on_cols = [c.to_Col() for c in distinct_on.values()]
|
1213
|
return mk_select(db, joins, cols, conds, distinct_on_cols,
|
1214
|
limit=limit_ref[0], start=0)
|
1215
|
|
1216
|
exc_strs = set()
|
1217
|
def log_exc(e):
|
1218
|
e_str = exc.str_(e, first_line_only=True)
|
1219
|
log_debug('Caught exception: '+e_str)
|
1220
|
assert e_str not in exc_strs # avoid infinite loops
|
1221
|
exc_strs.add(e_str)
|
1222
|
|
1223
|
def remove_all_rows():
|
1224
|
log_debug('Returning NULL for all rows')
|
1225
|
limit_ref[0] = 0 # just create an empty pkeys table
|
1226
|
|
1227
|
def ignore(in_col, value, e):
|
1228
|
track_data_error(db, errors_table_, in_col.srcs, value, e.cause.pgcode,
|
1229
|
e.cause.pgerror)
|
1230
|
|
1231
|
in_col_str = strings.as_tt(repr(in_col))
|
1232
|
db.log_debug('Adding index on '+in_col_str+' to enable fast filtering',
|
1233
|
level=2.5)
|
1234
|
add_index(db, in_col)
|
1235
|
|
1236
|
log_debug('Ignoring rows with '+in_col_str+' = '
|
1237
|
+strings.as_tt(repr(value)))
|
1238
|
def remove_rows(in_col, value, e):
|
1239
|
ignore(in_col, value, e)
|
1240
|
cond = (in_col, sql_gen.CompareCond(value, '!='))
|
1241
|
assert cond not in conds # avoid infinite loops
|
1242
|
conds.add(cond)
|
1243
|
def invalid2null(in_col, value, e):
|
1244
|
ignore(in_col, value, e)
|
1245
|
update(db, in_table, [(in_col, None)],
|
1246
|
sql_gen.ColValueCond(in_col, value))
|
1247
|
|
1248
|
def insert_pkeys_table(which):
|
1249
|
return sql_gen.Table(sql_gen.add_suffix(in_table.name,
|
1250
|
'_insert_'+which+'_pkeys'))
|
1251
|
insert_out_pkeys = insert_pkeys_table('out')
|
1252
|
insert_in_pkeys = insert_pkeys_table('in')
|
1253
|
|
1254
|
# Do inserts and selects
|
1255
|
join_cols = sql_gen.ColDict(db, out_table)
|
1256
|
while True:
|
1257
|
if limit_ref[0] == 0: # special case
|
1258
|
log_debug('Creating an empty pkeys table')
|
1259
|
cur = run_query_into(db, mk_select(db, out_table, [out_pkey],
|
1260
|
limit=limit_ref[0]), into=insert_out_pkeys)
|
1261
|
break # don't do main case
|
1262
|
|
1263
|
has_joins = join_cols != {}
|
1264
|
|
1265
|
# Prepare to insert new rows
|
1266
|
insert_joins = input_joins[:] # don't modify original!
|
1267
|
insert_args = dict(recover=True, cacheable=False)
|
1268
|
if has_joins:
|
1269
|
insert_joins.append(sql_gen.Join(out_table, join_cols,
|
1270
|
sql_gen.filter_out))
|
1271
|
else:
|
1272
|
insert_args.update(dict(returning=out_pkey, into=insert_out_pkeys))
|
1273
|
main_select = mk_main_select(insert_joins, mapping.values())
|
1274
|
|
1275
|
log_debug('Trying to insert new rows')
|
1276
|
try:
|
1277
|
cur = insert_select(db, out_table, mapping.keys(), main_select,
|
1278
|
**insert_args)
|
1279
|
break # insert successful
|
1280
|
except DuplicateKeyException, e:
|
1281
|
log_exc(e)
|
1282
|
|
1283
|
old_join_cols = join_cols.copy()
|
1284
|
distinct_on.update(util.dict_subset(mapping, e.cols))
|
1285
|
join_cols.update(util.dict_subset_right_join(mapping, e.cols))
|
1286
|
log_debug('Ignoring existing rows, comparing on these columns:\n'
|
1287
|
+strings.as_inline_table(join_cols, ustr=col_ustr))
|
1288
|
assert join_cols != old_join_cols # avoid infinite loops
|
1289
|
except NullValueException, e:
|
1290
|
log_exc(e)
|
1291
|
|
1292
|
out_col, = e.cols
|
1293
|
try: in_col = mapping[out_col]
|
1294
|
except KeyError:
|
1295
|
log_debug('Missing mapping for NOT NULL column '+out_col)
|
1296
|
remove_all_rows()
|
1297
|
else: remove_rows(in_col, None, e)
|
1298
|
except FunctionValueException, e:
|
1299
|
log_exc(e)
|
1300
|
|
1301
|
func_name = e.name
|
1302
|
value = e.value
|
1303
|
for out_col, in_col in mapping.iteritems():
|
1304
|
in_col = sql_gen.unwrap_func_call(in_col, func_name)
|
1305
|
invalid2null(in_col, value, e)
|
1306
|
except MissingCastException, e:
|
1307
|
log_exc(e)
|
1308
|
|
1309
|
out_col = e.col
|
1310
|
type_ = e.type
|
1311
|
|
1312
|
log_debug('Casting '+strings.as_tt(out_col)+' input to '
|
1313
|
+strings.as_tt(type_))
|
1314
|
def wrap_func(col): return cast(db, type_, col, errors_table_)
|
1315
|
mapping[out_col] = sql_gen.wrap(wrap_func, mapping[out_col])
|
1316
|
except DatabaseErrors, e:
|
1317
|
log_exc(e)
|
1318
|
|
1319
|
log_debug('No handler for exception')
|
1320
|
on_error(e)
|
1321
|
remove_all_rows()
|
1322
|
# after exception handled, rerun loop with additional constraints
|
1323
|
|
1324
|
if row_ct_ref != None and cur.rowcount >= 0:
|
1325
|
row_ct_ref[0] += cur.rowcount
|
1326
|
|
1327
|
if has_joins:
|
1328
|
select_joins = input_joins+[sql_gen.Join(out_table, join_cols)]
|
1329
|
log_debug('Getting output table pkeys of existing/inserted rows')
|
1330
|
insert_into_pkeys(select_joins, pkeys_cols)
|
1331
|
else:
|
1332
|
add_row_num(db, insert_out_pkeys) # for joining with input pkeys
|
1333
|
|
1334
|
log_debug('Getting input table pkeys of inserted rows')
|
1335
|
run_query_into(db, mk_main_select(input_joins, [in_pkey]),
|
1336
|
into=insert_in_pkeys)
|
1337
|
add_row_num(db, insert_in_pkeys) # for joining with output pkeys
|
1338
|
|
1339
|
assert table_row_count(db, insert_out_pkeys) == table_row_count(db,
|
1340
|
insert_in_pkeys)
|
1341
|
|
1342
|
log_debug('Combining output and input pkeys in inserted order')
|
1343
|
pkey_joins = [insert_in_pkeys, sql_gen.Join(insert_out_pkeys,
|
1344
|
{row_num_col: sql_gen.join_same_not_null})]
|
1345
|
insert_into_pkeys(pkey_joins, pkeys_names)
|
1346
|
|
1347
|
db.log_debug('Adding pkey on pkeys table to enable fast joins', level=2.5)
|
1348
|
add_pkey(db, into)
|
1349
|
|
1350
|
log_debug('Setting pkeys of missing rows to '+strings.as_tt(repr(default)))
|
1351
|
missing_rows_joins = input_joins+[sql_gen.Join(into,
|
1352
|
{in_pkey: sql_gen.join_same_not_null}, sql_gen.filter_out)]
|
1353
|
# must use join_same_not_null or query will take forever
|
1354
|
insert_into_pkeys(missing_rows_joins,
|
1355
|
[in_pkey_col, sql_gen.NamedCol(out_pkey, default)])
|
1356
|
|
1357
|
assert table_row_count(db, into) == table_row_count(db, in_table)
|
1358
|
|
1359
|
srcs = []
|
1360
|
if is_func: srcs = sql_gen.cols_srcs(in_cols)
|
1361
|
return sql_gen.Col(out_pkey, into, srcs)
|
1362
|
|
1363
|
##### Data cleanup
|
1364
|
|
1365
|
def cleanup_table(db, table, cols):
|
1366
|
table = sql_gen.as_Table(table)
|
1367
|
cols = map(sql_gen.as_Col, cols)
|
1368
|
|
1369
|
expr = ('nullif(nullif(trim(both from %s), '+db.esc_value('')+'), '
|
1370
|
+db.esc_value(r'\N')+')')
|
1371
|
changes = [(v, sql_gen.CustomCode(expr % v.to_str(db)))
|
1372
|
for v in cols]
|
1373
|
|
1374
|
update(db, table, changes)
|