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11
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aaronmk
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# Database access
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2 |
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3 |
1869
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aaronmk
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import copy
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4 |
2127
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import operator
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5 |
11
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aaronmk
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import re
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6 |
865
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aaronmk
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import warnings
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7 |
11
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aaronmk
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8 |
300
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import exc
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9 |
1909
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import dicts
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10 |
1893
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aaronmk
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import iters
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11 |
1960
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aaronmk
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import lists
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12 |
1889
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aaronmk
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from Proxy import Proxy
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13 |
1872
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aaronmk
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import rand
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14 |
2217
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import sql_gen
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15 |
862
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import strings
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131
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import util
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17 |
11
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aaronmk
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18 |
832
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aaronmk
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##### Exceptions
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19 |
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20 |
2804
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def get_cur_query(cur, input_query=None):
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21 |
2168
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raw_query = None
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22 |
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if hasattr(cur, 'query'): raw_query = cur.query
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23 |
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elif hasattr(cur, '_last_executed'): raw_query = cur._last_executed
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24 |
2170
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aaronmk
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25 |
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if raw_query != None: return raw_query
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26 |
2804
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aaronmk
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else: return '[input] '+strings.ustr(input_query)
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27 |
14
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aaronmk
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28 |
2170
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aaronmk
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def _add_cursor_info(e, *args, **kw_args):
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29 |
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'''For params, see get_cur_query()'''
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30 |
2771
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aaronmk
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exc.add_msg(e, 'query: '+strings.ustr(get_cur_query(*args, **kw_args)))
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31 |
135
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aaronmk
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32 |
300
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aaronmk
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class DbException(exc.ExceptionWithCause):
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33 |
14
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aaronmk
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def __init__(self, msg, cause=None, cur=None):
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34 |
2145
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exc.ExceptionWithCause.__init__(self, msg, cause, cause_newline=True)
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35 |
14
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aaronmk
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if cur != None: _add_cursor_info(self, cur)
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36 |
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37 |
2143
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aaronmk
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class ExceptionWithName(DbException):
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38 |
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def __init__(self, name, cause=None):
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39 |
2484
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aaronmk
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DbException.__init__(self, 'for name: '+strings.as_tt(str(name)), cause)
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40 |
2143
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aaronmk
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self.name = name
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41 |
360
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aaronmk
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|
42 |
2240
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aaronmk
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class ExceptionWithNameValue(DbException):
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43 |
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def __init__(self, name, value, cause=None):
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44 |
2484
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aaronmk
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DbException.__init__(self, 'for name: '+strings.as_tt(str(name))
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45 |
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+'; value: '+strings.as_tt(repr(value)), cause)
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2240
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aaronmk
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self.name = name
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self.value = value
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48 |
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2306
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aaronmk
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class ConstraintException(DbException):
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def __init__(self, name, cols, cause=None):
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2484
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aaronmk
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DbException.__init__(self, 'Violated '+strings.as_tt(name)
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52 |
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+' constraint on columns: '+strings.as_tt(', '.join(cols)), cause)
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53 |
2306
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aaronmk
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self.name = name
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468
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aaronmk
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self.cols = cols
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11
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aaronmk
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2523
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aaronmk
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class MissingCastException(DbException):
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def __init__(self, type_, col, cause=None):
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DbException.__init__(self, 'Missing cast to type '+strings.as_tt(type_)
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+' on column: '+strings.as_tt(col), cause)
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self.type = type_
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self.col = col
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62 |
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2143
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aaronmk
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class NameException(DbException): pass
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64 |
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2306
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aaronmk
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class DuplicateKeyException(ConstraintException): pass
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13
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aaronmk
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67 |
2306
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aaronmk
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class NullValueException(ConstraintException): pass
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68 |
13
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aaronmk
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69 |
2240
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aaronmk
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class FunctionValueException(ExceptionWithNameValue): pass
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70 |
2239
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aaronmk
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2143
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aaronmk
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class DuplicateTableException(ExceptionWithName): pass
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72 |
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2188
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aaronmk
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class DuplicateFunctionException(ExceptionWithName): pass
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89
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aaronmk
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class EmptyRowException(DbException): pass
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865
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aaronmk
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##### Warnings
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class DbWarning(UserWarning): pass
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1930
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aaronmk
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##### Result retrieval
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def col_names(cur): return (col[0] for col in cur.description)
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def rows(cur): return iter(lambda: cur.fetchone(), None)
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def consume_rows(cur):
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'''Used to fetch all rows so result will be cached'''
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iters.consume_iter(rows(cur))
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90 |
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def next_row(cur): return rows(cur).next()
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def row(cur):
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row_ = next_row(cur)
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consume_rows(cur)
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return row_
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def next_value(cur): return next_row(cur)[0]
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def value(cur): return row(cur)[0]
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def values(cur): return iters.func_iter(lambda: next_value(cur))
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def value_or_none(cur):
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try: return value(cur)
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except StopIteration: return None
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107 |
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108 |
2762
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aaronmk
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##### Escaping
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109 |
2101
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aaronmk
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110 |
2573
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aaronmk
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def esc_name_by_module(module, name):
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111 |
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if module == 'psycopg2' or module == None: quote = '"'
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112 |
2101
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aaronmk
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elif module == 'MySQLdb': quote = '`'
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113 |
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else: raise NotImplementedError("Can't escape name for "+module+' database')
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114 |
2500
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aaronmk
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return sql_gen.esc_name(name, quote)
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115 |
2101
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aaronmk
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116 |
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def esc_name_by_engine(engine, name, **kw_args):
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117 |
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return esc_name_by_module(db_engines[engine][0], name, **kw_args)
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118 |
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119 |
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def esc_name(db, name, **kw_args):
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return esc_name_by_module(util.root_module(db.db), name, **kw_args)
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121 |
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122 |
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def qual_name(db, schema, table):
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def esc_name_(name): return esc_name(db, name)
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table = esc_name_(table)
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if schema != None: return esc_name_(schema)+'.'+table
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126 |
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else: return table
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127 |
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128 |
1869
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aaronmk
|
##### Database connections
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129 |
1849
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aaronmk
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|
130 |
2097
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aaronmk
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db_config_names = ['engine', 'host', 'user', 'password', 'database', 'schemas']
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131 |
1926
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aaronmk
|
|
132 |
1869
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aaronmk
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db_engines = {
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133 |
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'MySQL': ('MySQLdb', {'password': 'passwd', 'database': 'db'}),
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134 |
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'PostgreSQL': ('psycopg2', {}),
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135 |
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}
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136 |
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DatabaseErrors_set = set([DbException])
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138 |
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DatabaseErrors = tuple(DatabaseErrors_set)
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139 |
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def _add_module(module):
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DatabaseErrors_set.add(module.DatabaseError)
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142 |
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global DatabaseErrors
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143 |
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DatabaseErrors = tuple(DatabaseErrors_set)
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144 |
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145 |
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def db_config_str(db_config):
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146 |
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return db_config['engine']+' database '+db_config['database']
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147 |
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148 |
2448
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aaronmk
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log_debug_none = lambda msg, level=2: None
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149 |
1901
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aaronmk
|
|
150 |
1849
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aaronmk
|
class DbConn:
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151 |
2190
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aaronmk
|
def __init__(self, db_config, serializable=True, autocommit=False,
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152 |
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caching=True, log_debug=log_debug_none):
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153 |
1869
|
aaronmk
|
self.db_config = db_config
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154 |
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self.serializable = serializable
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155 |
2190
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aaronmk
|
self.autocommit = autocommit
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156 |
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self.caching = caching
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157 |
1901
|
aaronmk
|
self.log_debug = log_debug
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158 |
2193
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aaronmk
|
self.debug = log_debug != log_debug_none
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159 |
1869
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aaronmk
|
|
160 |
|
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self.__db = None
|
161 |
1889
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aaronmk
|
self.query_results = {}
|
162 |
2139
|
aaronmk
|
self._savepoint = 0
|
163 |
2671
|
aaronmk
|
self._notices_seen = set()
|
164 |
1869
|
aaronmk
|
|
165 |
|
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def __getattr__(self, name):
|
166 |
|
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if name == '__dict__': raise Exception('getting __dict__')
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167 |
|
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if name == 'db': return self._db()
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168 |
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else: raise AttributeError()
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169 |
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|
170 |
|
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def __getstate__(self):
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171 |
|
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state = copy.copy(self.__dict__) # shallow copy
|
172 |
1915
|
aaronmk
|
state['log_debug'] = None # don't pickle the debug callback
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173 |
1869
|
aaronmk
|
state['_DbConn__db'] = None # don't pickle the connection
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174 |
|
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return state
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175 |
|
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|
176 |
2165
|
aaronmk
|
def connected(self): return self.__db != None
|
177 |
|
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|
178 |
1869
|
aaronmk
|
def _db(self):
|
179 |
|
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if self.__db == None:
|
180 |
|
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# Process db_config
|
181 |
|
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db_config = self.db_config.copy() # don't modify input!
|
182 |
2097
|
aaronmk
|
schemas = db_config.pop('schemas', None)
|
183 |
1869
|
aaronmk
|
module_name, mappings = db_engines[db_config.pop('engine')]
|
184 |
|
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module = __import__(module_name)
|
185 |
|
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_add_module(module)
|
186 |
|
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for orig, new in mappings.iteritems():
|
187 |
|
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try: util.rename_key(db_config, orig, new)
|
188 |
|
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except KeyError: pass
|
189 |
|
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|
190 |
|
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# Connect
|
191 |
|
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self.__db = module.connect(**db_config)
|
192 |
|
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|
193 |
|
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# Configure connection
|
194 |
2676
|
aaronmk
|
if self.serializable and not self.autocommit: self.run_query(
|
195 |
2678
|
aaronmk
|
'SET TRANSACTION ISOLATION LEVEL SERIALIZABLE', log_level=4)
|
196 |
2101
|
aaronmk
|
if schemas != None:
|
197 |
|
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schemas_ = ''.join((esc_name(self, s)+', '
|
198 |
|
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for s in schemas.split(',')))
|
199 |
2792
|
aaronmk
|
self.run_query("SELECT set_config('search_path', "
|
200 |
|
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+self.esc_value(schemas_)
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201 |
|
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+" || current_setting('search_path'), false)", log_level=3)
|
202 |
1869
|
aaronmk
|
|
203 |
|
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return self.__db
|
204 |
1889
|
aaronmk
|
|
205 |
1891
|
aaronmk
|
class DbCursor(Proxy):
|
206 |
1927
|
aaronmk
|
def __init__(self, outer):
|
207 |
1891
|
aaronmk
|
Proxy.__init__(self, outer.db.cursor())
|
208 |
2191
|
aaronmk
|
self.outer = outer
|
209 |
1927
|
aaronmk
|
self.query_results = outer.query_results
|
210 |
1894
|
aaronmk
|
self.query_lookup = None
|
211 |
1891
|
aaronmk
|
self.result = []
|
212 |
1889
|
aaronmk
|
|
213 |
2802
|
aaronmk
|
def execute(self, query):
|
214 |
2764
|
aaronmk
|
self._is_insert = query.startswith('INSERT')
|
215 |
2797
|
aaronmk
|
self.query_lookup = query
|
216 |
2148
|
aaronmk
|
try:
|
217 |
2191
|
aaronmk
|
try:
|
218 |
2802
|
aaronmk
|
cur = self.inner.execute(query)
|
219 |
2191
|
aaronmk
|
self.outer.do_autocommit()
|
220 |
2802
|
aaronmk
|
finally: self.query = get_cur_query(self.inner, query)
|
221 |
1904
|
aaronmk
|
except Exception, e:
|
222 |
2802
|
aaronmk
|
_add_cursor_info(e, self, query)
|
223 |
1904
|
aaronmk
|
self.result = e # cache the exception as the result
|
224 |
|
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self._cache_result()
|
225 |
|
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raise
|
226 |
2800
|
aaronmk
|
if self.rowcount == 0 and query.startswith('SELECT'): # empty SELECT
|
227 |
|
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consume_rows(self) # fetch all rows so result will be cached
|
228 |
2762
|
aaronmk
|
return cur
|
229 |
1894
|
aaronmk
|
|
230 |
1891
|
aaronmk
|
def fetchone(self):
|
231 |
|
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row = self.inner.fetchone()
|
232 |
1899
|
aaronmk
|
if row != None: self.result.append(row)
|
233 |
|
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# otherwise, fetched all rows
|
234 |
1904
|
aaronmk
|
else: self._cache_result()
|
235 |
|
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return row
|
236 |
|
|
|
237 |
|
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def _cache_result(self):
|
238 |
1906
|
aaronmk
|
# For inserts, only cache exceptions since inserts are not
|
239 |
|
|
# idempotent, but an invalid insert will always be invalid
|
240 |
1930
|
aaronmk
|
if self.query_results != None and (not self._is_insert
|
241 |
1906
|
aaronmk
|
or isinstance(self.result, Exception)):
|
242 |
|
|
|
243 |
1894
|
aaronmk
|
assert self.query_lookup != None
|
244 |
1916
|
aaronmk
|
self.query_results[self.query_lookup] = self.CacheCursor(
|
245 |
|
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util.dict_subset(dicts.AttrsDictView(self),
|
246 |
|
|
['query', 'result', 'rowcount', 'description']))
|
247 |
1906
|
aaronmk
|
|
248 |
1916
|
aaronmk
|
class CacheCursor:
|
249 |
|
|
def __init__(self, cached_result): self.__dict__ = cached_result
|
250 |
|
|
|
251 |
1927
|
aaronmk
|
def execute(self, *args, **kw_args):
|
252 |
1916
|
aaronmk
|
if isinstance(self.result, Exception): raise self.result
|
253 |
|
|
# otherwise, result is a rows list
|
254 |
|
|
self.iter = iter(self.result)
|
255 |
|
|
|
256 |
|
|
def fetchone(self):
|
257 |
|
|
try: return self.iter.next()
|
258 |
|
|
except StopIteration: return None
|
259 |
1891
|
aaronmk
|
|
260 |
2212
|
aaronmk
|
def esc_value(self, value):
|
261 |
2663
|
aaronmk
|
try: str_ = self.mogrify('%s', [value])
|
262 |
|
|
except NotImplementedError, e:
|
263 |
|
|
module = util.root_module(self.db)
|
264 |
|
|
if module == 'MySQLdb':
|
265 |
|
|
import _mysql
|
266 |
|
|
str_ = _mysql.escape_string(value)
|
267 |
|
|
else: raise e
|
268 |
2374
|
aaronmk
|
return strings.to_unicode(str_)
|
269 |
2212
|
aaronmk
|
|
270 |
2347
|
aaronmk
|
def esc_name(self, name): return esc_name(self, name) # calls global func
|
271 |
|
|
|
272 |
2814
|
aaronmk
|
def std_code(self, str_):
|
273 |
|
|
'''Standardizes SQL code.
|
274 |
|
|
* Ensures that string literals are prefixed by `E`
|
275 |
|
|
'''
|
276 |
|
|
if str_.startswith("'"): str_ = 'E'+str_
|
277 |
|
|
return str_
|
278 |
|
|
|
279 |
2665
|
aaronmk
|
def can_mogrify(self):
|
280 |
2663
|
aaronmk
|
module = util.root_module(self.db)
|
281 |
2665
|
aaronmk
|
return module == 'psycopg2'
|
282 |
2663
|
aaronmk
|
|
283 |
2665
|
aaronmk
|
def mogrify(self, query, params=None):
|
284 |
|
|
if self.can_mogrify(): return self.db.cursor().mogrify(query, params)
|
285 |
|
|
else: raise NotImplementedError("Can't mogrify query")
|
286 |
|
|
|
287 |
2671
|
aaronmk
|
def print_notices(self):
|
288 |
2725
|
aaronmk
|
if hasattr(self.db, 'notices'):
|
289 |
|
|
for msg in self.db.notices:
|
290 |
|
|
if msg not in self._notices_seen:
|
291 |
|
|
self._notices_seen.add(msg)
|
292 |
|
|
self.log_debug(msg, level=2)
|
293 |
2671
|
aaronmk
|
|
294 |
2793
|
aaronmk
|
def run_query(self, query, cacheable=False, log_level=2,
|
295 |
2464
|
aaronmk
|
debug_msg_ref=None):
|
296 |
2445
|
aaronmk
|
'''
|
297 |
2464
|
aaronmk
|
@param log_ignore_excs The log_level will be increased by 2 if the query
|
298 |
|
|
throws one of these exceptions.
|
299 |
2664
|
aaronmk
|
@param debug_msg_ref If specified, the log message will be returned in
|
300 |
|
|
this instead of being output. This allows you to filter log messages
|
301 |
|
|
depending on the result of the query.
|
302 |
2445
|
aaronmk
|
'''
|
303 |
2167
|
aaronmk
|
assert query != None
|
304 |
|
|
|
305 |
2047
|
aaronmk
|
if not self.caching: cacheable = False
|
306 |
1903
|
aaronmk
|
used_cache = False
|
307 |
2664
|
aaronmk
|
|
308 |
|
|
def log_msg(query):
|
309 |
|
|
if used_cache: cache_status = 'cache hit'
|
310 |
|
|
elif cacheable: cache_status = 'cache miss'
|
311 |
|
|
else: cache_status = 'non-cacheable'
|
312 |
|
|
return 'DB query: '+cache_status+':\n'+strings.as_code(query, 'SQL')
|
313 |
|
|
|
314 |
1903
|
aaronmk
|
try:
|
315 |
1927
|
aaronmk
|
# Get cursor
|
316 |
|
|
if cacheable:
|
317 |
|
|
try:
|
318 |
2797
|
aaronmk
|
cur = self.query_results[query]
|
319 |
1927
|
aaronmk
|
used_cache = True
|
320 |
|
|
except KeyError: cur = self.DbCursor(self)
|
321 |
|
|
else: cur = self.db.cursor()
|
322 |
|
|
|
323 |
2664
|
aaronmk
|
# Log query
|
324 |
|
|
if self.debug and debug_msg_ref == None: # log before running
|
325 |
|
|
self.log_debug(log_msg(query), log_level)
|
326 |
|
|
|
327 |
1927
|
aaronmk
|
# Run query
|
328 |
2793
|
aaronmk
|
cur.execute(query)
|
329 |
1903
|
aaronmk
|
finally:
|
330 |
2671
|
aaronmk
|
self.print_notices()
|
331 |
2664
|
aaronmk
|
if self.debug and debug_msg_ref != None: # return after running
|
332 |
2793
|
aaronmk
|
debug_msg_ref[0] = log_msg(str(get_cur_query(cur, query)))
|
333 |
1903
|
aaronmk
|
|
334 |
|
|
return cur
|
335 |
1914
|
aaronmk
|
|
336 |
2797
|
aaronmk
|
def is_cached(self, query): return query in self.query_results
|
337 |
2139
|
aaronmk
|
|
338 |
2683
|
aaronmk
|
def with_autocommit(self, func, autocommit=True):
|
339 |
2801
|
aaronmk
|
import psycopg2.extensions
|
340 |
|
|
if autocommit:
|
341 |
|
|
isolation_level = psycopg2.extensions.ISOLATION_LEVEL_AUTOCOMMIT
|
342 |
|
|
else: isolation_level = psycopg2.extensions.ISOLATION_LEVEL_SERIALIZABLE
|
343 |
|
|
|
344 |
|
|
prev_isolation_level = self.db.isolation_level
|
345 |
|
|
self.db.set_isolation_level(isolation_level)
|
346 |
2683
|
aaronmk
|
try: return func()
|
347 |
2801
|
aaronmk
|
finally: self.db.set_isolation_level(prev_isolation_level)
|
348 |
2683
|
aaronmk
|
|
349 |
2139
|
aaronmk
|
def with_savepoint(self, func):
|
350 |
2171
|
aaronmk
|
savepoint = 'level_'+str(self._savepoint)
|
351 |
2443
|
aaronmk
|
self.run_query('SAVEPOINT '+savepoint, log_level=4)
|
352 |
2139
|
aaronmk
|
self._savepoint += 1
|
353 |
2683
|
aaronmk
|
try:
|
354 |
2139
|
aaronmk
|
try: return_val = func()
|
355 |
|
|
finally:
|
356 |
|
|
self._savepoint -= 1
|
357 |
|
|
assert self._savepoint >= 0
|
358 |
|
|
except:
|
359 |
2443
|
aaronmk
|
self.run_query('ROLLBACK TO SAVEPOINT '+savepoint, log_level=4)
|
360 |
2139
|
aaronmk
|
raise
|
361 |
|
|
else:
|
362 |
2443
|
aaronmk
|
self.run_query('RELEASE SAVEPOINT '+savepoint, log_level=4)
|
363 |
2191
|
aaronmk
|
self.do_autocommit()
|
364 |
2139
|
aaronmk
|
return return_val
|
365 |
2191
|
aaronmk
|
|
366 |
|
|
def do_autocommit(self):
|
367 |
|
|
'''Autocommits if outside savepoint'''
|
368 |
|
|
assert self._savepoint >= 0
|
369 |
|
|
if self.autocommit and self._savepoint == 0:
|
370 |
2668
|
aaronmk
|
self.log_debug('Autocommitting')
|
371 |
2191
|
aaronmk
|
self.db.commit()
|
372 |
2643
|
aaronmk
|
|
373 |
2819
|
aaronmk
|
def col_info(self, col):
|
374 |
2643
|
aaronmk
|
table = sql_gen.Table('columns', 'information_schema')
|
375 |
2821
|
aaronmk
|
cols = ['data_type', 'column_default',
|
376 |
|
|
cast(self, 'boolean', 'is_nullable')]
|
377 |
2643
|
aaronmk
|
|
378 |
|
|
conds = [('table_name', col.table.name), ('column_name', col.name)]
|
379 |
|
|
schema = col.table.schema
|
380 |
|
|
if schema != None: conds.append(('table_schema', schema))
|
381 |
|
|
|
382 |
2819
|
aaronmk
|
type_, default, nullable = row(select(self, table, cols, conds,
|
383 |
|
|
order_by='table_schema', limit=1, log_level=3))
|
384 |
2643
|
aaronmk
|
# TODO: order_by search_path schema order
|
385 |
2819
|
aaronmk
|
default = sql_gen.as_Code(default, self)
|
386 |
|
|
|
387 |
|
|
return sql_gen.TypedCol(col.name, type_, default, nullable)
|
388 |
1849
|
aaronmk
|
|
389 |
1869
|
aaronmk
|
connect = DbConn
|
390 |
|
|
|
391 |
832
|
aaronmk
|
##### Recoverable querying
|
392 |
15
|
aaronmk
|
|
393 |
2139
|
aaronmk
|
def with_savepoint(db, func): return db.with_savepoint(func)
|
394 |
11
|
aaronmk
|
|
395 |
2791
|
aaronmk
|
def run_query(db, query, recover=None, cacheable=False, log_level=2,
|
396 |
|
|
log_ignore_excs=None, **kw_args):
|
397 |
2794
|
aaronmk
|
'''For params, see DbConn.run_query()'''
|
398 |
830
|
aaronmk
|
if recover == None: recover = False
|
399 |
2464
|
aaronmk
|
if log_ignore_excs == None: log_ignore_excs = ()
|
400 |
|
|
log_ignore_excs = tuple(log_ignore_excs)
|
401 |
830
|
aaronmk
|
|
402 |
2666
|
aaronmk
|
debug_msg_ref = None # usually, db.run_query() logs query before running it
|
403 |
|
|
# But if filtering with log_ignore_excs, wait until after exception parsing
|
404 |
|
|
if log_ignore_excs != () or not db.can_mogrify(): debug_msg_ref = [None]
|
405 |
|
|
|
406 |
2148
|
aaronmk
|
try:
|
407 |
2464
|
aaronmk
|
try:
|
408 |
2794
|
aaronmk
|
def run(): return db.run_query(query, cacheable, log_level,
|
409 |
2793
|
aaronmk
|
debug_msg_ref, **kw_args)
|
410 |
2796
|
aaronmk
|
if recover and not db.is_cached(query):
|
411 |
2464
|
aaronmk
|
return with_savepoint(db, run)
|
412 |
|
|
else: return run() # don't need savepoint if cached
|
413 |
|
|
except Exception, e:
|
414 |
|
|
if not recover: raise # need savepoint to run index_cols()
|
415 |
|
|
msg = exc.str_(e)
|
416 |
|
|
|
417 |
|
|
match = re.search(r'duplicate key value violates unique constraint '
|
418 |
2493
|
aaronmk
|
r'"((_?[^\W_]+)_.+?)"', msg)
|
419 |
2464
|
aaronmk
|
if match:
|
420 |
|
|
constraint, table = match.groups()
|
421 |
|
|
try: cols = index_cols(db, table, constraint)
|
422 |
|
|
except NotImplementedError: raise e
|
423 |
|
|
else: raise DuplicateKeyException(constraint, cols, e)
|
424 |
|
|
|
425 |
2493
|
aaronmk
|
match = re.search(r'null value in column "(.+?)" violates not-null'
|
426 |
2464
|
aaronmk
|
r' constraint', msg)
|
427 |
|
|
if match: raise NullValueException('NOT NULL', [match.group(1)], e)
|
428 |
|
|
|
429 |
|
|
match = re.search(r'\b(?:invalid input (?:syntax|value)\b.*?'
|
430 |
|
|
r'|date/time field value out of range): "(.+?)"\n'
|
431 |
2535
|
aaronmk
|
r'(?:(?s).*?)\bfunction "(.+?)"', msg)
|
432 |
2464
|
aaronmk
|
if match:
|
433 |
|
|
value, name = match.groups()
|
434 |
|
|
raise FunctionValueException(name, strings.to_unicode(value), e)
|
435 |
|
|
|
436 |
2526
|
aaronmk
|
match = re.search(r'column "(.+?)" is of type (.+?) but expression '
|
437 |
2523
|
aaronmk
|
r'is of type', msg)
|
438 |
|
|
if match:
|
439 |
|
|
col, type_ = match.groups()
|
440 |
|
|
raise MissingCastException(type_, col, e)
|
441 |
|
|
|
442 |
2493
|
aaronmk
|
match = re.search(r'relation "(.+?)" already exists', msg)
|
443 |
2464
|
aaronmk
|
if match: raise DuplicateTableException(match.group(1), e)
|
444 |
|
|
|
445 |
2493
|
aaronmk
|
match = re.search(r'function "(.+?)" already exists', msg)
|
446 |
2464
|
aaronmk
|
if match: raise DuplicateFunctionException(match.group(1), e)
|
447 |
|
|
|
448 |
|
|
raise # no specific exception raised
|
449 |
|
|
except log_ignore_excs:
|
450 |
|
|
log_level += 2
|
451 |
|
|
raise
|
452 |
|
|
finally:
|
453 |
2666
|
aaronmk
|
if debug_msg_ref != None and debug_msg_ref[0] != None:
|
454 |
|
|
db.log_debug(debug_msg_ref[0], log_level)
|
455 |
830
|
aaronmk
|
|
456 |
832
|
aaronmk
|
##### Basic queries
|
457 |
|
|
|
458 |
2153
|
aaronmk
|
def next_version(name):
|
459 |
2163
|
aaronmk
|
version = 1 # first existing name was version 0
|
460 |
2586
|
aaronmk
|
match = re.match(r'^(.*)#(\d+)$', name)
|
461 |
2153
|
aaronmk
|
if match:
|
462 |
2586
|
aaronmk
|
name, version = match.groups()
|
463 |
|
|
version = int(version)+1
|
464 |
2588
|
aaronmk
|
return sql_gen.add_suffix(name, '#'+str(version))
|
465 |
2153
|
aaronmk
|
|
466 |
2789
|
aaronmk
|
def run_query_into(db, query, into=None, add_indexes_=False, **kw_args):
|
467 |
2085
|
aaronmk
|
'''Outputs a query to a temp table.
|
468 |
|
|
For params, see run_query().
|
469 |
|
|
'''
|
470 |
2789
|
aaronmk
|
if into == None: return run_query(db, query, **kw_args)
|
471 |
2790
|
aaronmk
|
|
472 |
|
|
assert isinstance(into, sql_gen.Table)
|
473 |
|
|
|
474 |
|
|
kw_args['recover'] = True
|
475 |
|
|
kw_args.setdefault('log_ignore_excs', (DuplicateTableException,))
|
476 |
|
|
|
477 |
|
|
temp = not db.autocommit # tables are permanent in autocommit mode
|
478 |
|
|
# "temporary tables cannot specify a schema name", so remove schema
|
479 |
|
|
if temp: into.schema = None
|
480 |
|
|
|
481 |
|
|
# Create table
|
482 |
|
|
while True:
|
483 |
|
|
create_query = 'CREATE'
|
484 |
|
|
if temp: create_query += ' TEMP'
|
485 |
|
|
create_query += ' TABLE '+into.to_str(db)+' AS\n'+query
|
486 |
2385
|
aaronmk
|
|
487 |
2790
|
aaronmk
|
try:
|
488 |
|
|
cur = run_query(db, create_query, **kw_args)
|
489 |
|
|
# CREATE TABLE AS sets rowcount to # rows in query
|
490 |
|
|
break
|
491 |
|
|
except DuplicateTableException, e:
|
492 |
|
|
into.name = next_version(into.name)
|
493 |
|
|
# try again with next version of name
|
494 |
|
|
|
495 |
|
|
if add_indexes_: add_indexes(db, into)
|
496 |
|
|
|
497 |
|
|
return cur
|
498 |
2085
|
aaronmk
|
|
499 |
2120
|
aaronmk
|
order_by_pkey = object() # tells mk_select() to order by the pkey
|
500 |
|
|
|
501 |
2199
|
aaronmk
|
distinct_on_all = object() # tells mk_select() to SELECT DISTINCT ON all columns
|
502 |
|
|
|
503 |
2233
|
aaronmk
|
def mk_select(db, tables, fields=None, conds=None, distinct_on=[], limit=None,
|
504 |
2293
|
aaronmk
|
start=None, order_by=order_by_pkey, default_table=None):
|
505 |
1981
|
aaronmk
|
'''
|
506 |
2121
|
aaronmk
|
@param tables The single table to select from, or a list of tables to join
|
507 |
2280
|
aaronmk
|
together, with tables after the first being sql_gen.Join objects
|
508 |
1981
|
aaronmk
|
@param fields Use None to select all fields in the table
|
509 |
2377
|
aaronmk
|
@param conds WHERE conditions: [(compare_left_side, compare_right_side),...]
|
510 |
2379
|
aaronmk
|
* container can be any iterable type
|
511 |
2399
|
aaronmk
|
* compare_left_side: sql_gen.Code|str (for col name)
|
512 |
|
|
* compare_right_side: sql_gen.ValueCond|literal value
|
513 |
2199
|
aaronmk
|
@param distinct_on The columns to SELECT DISTINCT ON, or distinct_on_all to
|
514 |
|
|
use all columns
|
515 |
2786
|
aaronmk
|
@return query
|
516 |
1981
|
aaronmk
|
'''
|
517 |
2315
|
aaronmk
|
# Parse tables param
|
518 |
2121
|
aaronmk
|
if not lists.is_seq(tables): tables = [tables]
|
519 |
2141
|
aaronmk
|
tables = list(tables) # don't modify input! (list() copies input)
|
520 |
2315
|
aaronmk
|
table0 = sql_gen.as_Table(tables.pop(0)) # first table is separate
|
521 |
2121
|
aaronmk
|
|
522 |
2315
|
aaronmk
|
# Parse other params
|
523 |
2376
|
aaronmk
|
if conds == None: conds = []
|
524 |
2650
|
aaronmk
|
elif dicts.is_dict(conds): conds = conds.items()
|
525 |
2379
|
aaronmk
|
conds = list(conds) # don't modify input! (list() copies input)
|
526 |
135
|
aaronmk
|
assert limit == None or type(limit) == int
|
527 |
865
|
aaronmk
|
assert start == None or type(start) == int
|
528 |
2315
|
aaronmk
|
if order_by is order_by_pkey:
|
529 |
|
|
if distinct_on != []: order_by = None
|
530 |
|
|
else: order_by = pkey(db, table0, recover=True)
|
531 |
865
|
aaronmk
|
|
532 |
2315
|
aaronmk
|
query = 'SELECT'
|
533 |
2056
|
aaronmk
|
|
534 |
2315
|
aaronmk
|
def parse_col(col): return sql_gen.as_Col(col, default_table).to_str(db)
|
535 |
2056
|
aaronmk
|
|
536 |
2200
|
aaronmk
|
# DISTINCT ON columns
|
537 |
2233
|
aaronmk
|
if distinct_on != []:
|
538 |
2467
|
aaronmk
|
query += '\nDISTINCT'
|
539 |
2254
|
aaronmk
|
if distinct_on is not distinct_on_all:
|
540 |
2200
|
aaronmk
|
query += ' ON ('+(', '.join(map(parse_col, distinct_on)))+')'
|
541 |
|
|
|
542 |
|
|
# Columns
|
543 |
2467
|
aaronmk
|
query += '\n'
|
544 |
1135
|
aaronmk
|
if fields == None: query += '*'
|
545 |
2765
|
aaronmk
|
else:
|
546 |
|
|
assert fields != []
|
547 |
|
|
query += '\n, '.join(map(parse_col, fields))
|
548 |
2200
|
aaronmk
|
|
549 |
|
|
# Main table
|
550 |
2467
|
aaronmk
|
query += '\nFROM '+table0.to_str(db)
|
551 |
865
|
aaronmk
|
|
552 |
2122
|
aaronmk
|
# Add joins
|
553 |
2271
|
aaronmk
|
left_table = table0
|
554 |
2263
|
aaronmk
|
for join_ in tables:
|
555 |
|
|
table = join_.table
|
556 |
2238
|
aaronmk
|
|
557 |
2343
|
aaronmk
|
# Parse special values
|
558 |
|
|
if join_.type_ is sql_gen.filter_out: # filter no match
|
559 |
2376
|
aaronmk
|
conds.append((sql_gen.Col(table_not_null_col(db, table), table),
|
560 |
|
|
None))
|
561 |
2343
|
aaronmk
|
|
562 |
2467
|
aaronmk
|
query += '\n'+join_.to_str(db, left_table)
|
563 |
2122
|
aaronmk
|
|
564 |
|
|
left_table = table
|
565 |
|
|
|
566 |
865
|
aaronmk
|
missing = True
|
567 |
2376
|
aaronmk
|
if conds != []:
|
568 |
2576
|
aaronmk
|
if len(conds) == 1: whitespace = ' '
|
569 |
|
|
else: whitespace = '\n'
|
570 |
2578
|
aaronmk
|
query += '\n'+sql_gen.combine_conds([sql_gen.ColValueCond(l, r)
|
571 |
|
|
.to_str(db) for l, r in conds], 'WHERE')
|
572 |
865
|
aaronmk
|
missing = False
|
573 |
2227
|
aaronmk
|
if order_by != None:
|
574 |
2467
|
aaronmk
|
query += '\nORDER BY '+sql_gen.as_Col(order_by, table0).to_str(db)
|
575 |
|
|
if limit != None: query += '\nLIMIT '+str(limit); missing = False
|
576 |
865
|
aaronmk
|
if start != None:
|
577 |
2467
|
aaronmk
|
if start != 0: query += '\nOFFSET '+str(start)
|
578 |
865
|
aaronmk
|
missing = False
|
579 |
|
|
if missing: warnings.warn(DbWarning(
|
580 |
|
|
'SELECT statement missing a WHERE, LIMIT, or OFFSET clause: '+query))
|
581 |
|
|
|
582 |
2786
|
aaronmk
|
return query
|
583 |
11
|
aaronmk
|
|
584 |
2054
|
aaronmk
|
def select(db, *args, **kw_args):
|
585 |
|
|
'''For params, see mk_select() and run_query()'''
|
586 |
|
|
recover = kw_args.pop('recover', None)
|
587 |
|
|
cacheable = kw_args.pop('cacheable', True)
|
588 |
2442
|
aaronmk
|
log_level = kw_args.pop('log_level', 2)
|
589 |
2054
|
aaronmk
|
|
590 |
2791
|
aaronmk
|
return run_query(db, mk_select(db, *args, **kw_args), recover, cacheable,
|
591 |
|
|
log_level=log_level)
|
592 |
2054
|
aaronmk
|
|
593 |
2788
|
aaronmk
|
def mk_insert_select(db, table, cols=None, select_query=None, returning=None,
|
594 |
|
|
embeddable=False):
|
595 |
1960
|
aaronmk
|
'''
|
596 |
|
|
@param returning str|None An inserted column (such as pkey) to return
|
597 |
2070
|
aaronmk
|
@param embeddable Whether the query should be embeddable as a nested SELECT.
|
598 |
2073
|
aaronmk
|
Warning: If you set this and cacheable=True when the query is run, the
|
599 |
|
|
query will be fully cached, not just if it raises an exception.
|
600 |
1960
|
aaronmk
|
'''
|
601 |
2754
|
aaronmk
|
table = sql_gen.remove_table_rename(sql_gen.as_Table(table))
|
602 |
2318
|
aaronmk
|
if cols == []: cols = None # no cols (all defaults) = unknown col names
|
603 |
2646
|
aaronmk
|
if cols != None:
|
604 |
|
|
cols = [sql_gen.to_name_only_col(v, table).to_str(db) for v in cols]
|
605 |
2063
|
aaronmk
|
if select_query == None: select_query = 'DEFAULT VALUES'
|
606 |
2327
|
aaronmk
|
if returning != None: returning = sql_gen.as_Col(returning, table)
|
607 |
2063
|
aaronmk
|
|
608 |
|
|
# Build query
|
609 |
2497
|
aaronmk
|
first_line = 'INSERT INTO '+table.to_str(db)
|
610 |
|
|
query = first_line
|
611 |
2467
|
aaronmk
|
if cols != None: query += '\n('+', '.join(cols)+')'
|
612 |
|
|
query += '\n'+select_query
|
613 |
2063
|
aaronmk
|
|
614 |
|
|
if returning != None:
|
615 |
2743
|
aaronmk
|
query += '\nRETURNING '+sql_gen.to_name_only_col(returning).to_str(db)
|
616 |
2063
|
aaronmk
|
|
617 |
2070
|
aaronmk
|
if embeddable:
|
618 |
2327
|
aaronmk
|
assert returning != None
|
619 |
|
|
|
620 |
2070
|
aaronmk
|
# Create function
|
621 |
2513
|
aaronmk
|
function_name = sql_gen.clean_name(first_line)
|
622 |
2327
|
aaronmk
|
return_type = 'SETOF '+returning.to_str(db)+'%TYPE'
|
623 |
2189
|
aaronmk
|
while True:
|
624 |
|
|
try:
|
625 |
2698
|
aaronmk
|
function = sql_gen.TempFunction(function_name, db.autocommit)
|
626 |
2194
|
aaronmk
|
|
627 |
2189
|
aaronmk
|
function_query = '''\
|
628 |
2698
|
aaronmk
|
CREATE FUNCTION '''+function.to_str(db)+'''()
|
629 |
2467
|
aaronmk
|
RETURNS '''+return_type+'''
|
630 |
|
|
LANGUAGE sql
|
631 |
|
|
AS $$
|
632 |
2788
|
aaronmk
|
'''+query+''';
|
633 |
2467
|
aaronmk
|
$$;
|
634 |
2070
|
aaronmk
|
'''
|
635 |
2446
|
aaronmk
|
run_query(db, function_query, recover=True, cacheable=True,
|
636 |
2464
|
aaronmk
|
log_ignore_excs=(DuplicateFunctionException,))
|
637 |
2189
|
aaronmk
|
break # this version was successful
|
638 |
|
|
except DuplicateFunctionException, e:
|
639 |
|
|
function_name = next_version(function_name)
|
640 |
|
|
# try again with next version of name
|
641 |
2070
|
aaronmk
|
|
642 |
2337
|
aaronmk
|
# Return query that uses function
|
643 |
2698
|
aaronmk
|
func_table = sql_gen.NamedTable('f', sql_gen.FunctionCall(function),
|
644 |
2742
|
aaronmk
|
[returning]) # AS clause requires function alias
|
645 |
2787
|
aaronmk
|
return mk_select(db, func_table, start=0, order_by=None)
|
646 |
2070
|
aaronmk
|
|
647 |
2787
|
aaronmk
|
return query
|
648 |
2066
|
aaronmk
|
|
649 |
|
|
def insert_select(db, *args, **kw_args):
|
650 |
2085
|
aaronmk
|
'''For params, see mk_insert_select() and run_query_into()
|
651 |
2386
|
aaronmk
|
@param into sql_gen.Table with suggested name of temp table to put RETURNING
|
652 |
|
|
values in
|
653 |
2072
|
aaronmk
|
'''
|
654 |
2386
|
aaronmk
|
into = kw_args.pop('into', None)
|
655 |
|
|
if into != None: kw_args['embeddable'] = True
|
656 |
2066
|
aaronmk
|
recover = kw_args.pop('recover', None)
|
657 |
|
|
cacheable = kw_args.pop('cacheable', True)
|
658 |
2673
|
aaronmk
|
log_level = kw_args.pop('log_level', 2)
|
659 |
2066
|
aaronmk
|
|
660 |
2789
|
aaronmk
|
return run_query_into(db, mk_insert_select(db, *args, **kw_args), into,
|
661 |
2787
|
aaronmk
|
recover=recover, cacheable=cacheable, log_level=log_level)
|
662 |
2063
|
aaronmk
|
|
663 |
2738
|
aaronmk
|
default = sql_gen.default # tells insert() to use the default value for a column
|
664 |
2066
|
aaronmk
|
|
665 |
2063
|
aaronmk
|
def insert(db, table, row, *args, **kw_args):
|
666 |
2085
|
aaronmk
|
'''For params, see insert_select()'''
|
667 |
1960
|
aaronmk
|
if lists.is_seq(row): cols = None
|
668 |
|
|
else:
|
669 |
|
|
cols = row.keys()
|
670 |
|
|
row = row.values()
|
671 |
2738
|
aaronmk
|
row = list(row) # ensure that "== []" works
|
672 |
1960
|
aaronmk
|
|
673 |
2738
|
aaronmk
|
if row == []: query = None
|
674 |
|
|
else: query = sql_gen.Values(row).to_str(db)
|
675 |
1961
|
aaronmk
|
|
676 |
2788
|
aaronmk
|
return insert_select(db, table, cols, query, *args, **kw_args)
|
677 |
11
|
aaronmk
|
|
678 |
2402
|
aaronmk
|
def mk_update(db, table, changes=None, cond=None):
|
679 |
|
|
'''
|
680 |
|
|
@param changes [(col, new_value),...]
|
681 |
|
|
* container can be any iterable type
|
682 |
|
|
* col: sql_gen.Code|str (for col name)
|
683 |
|
|
* new_value: sql_gen.Code|literal value
|
684 |
|
|
@param cond sql_gen.Code WHERE condition. e.g. use sql_gen.*Cond objects.
|
685 |
|
|
@return str query
|
686 |
|
|
'''
|
687 |
|
|
query = 'UPDATE '+sql_gen.as_Table(table).to_str(db)+'\nSET\n'
|
688 |
2405
|
aaronmk
|
query += ',\n'.join((sql_gen.to_name_only_col(col, table).to_str(db)+' = '
|
689 |
2402
|
aaronmk
|
+sql_gen.as_Value(new_value).to_str(db) for col, new_value in changes))
|
690 |
2467
|
aaronmk
|
if cond != None: query += '\nWHERE\n'+cond.to_str(db)
|
691 |
2402
|
aaronmk
|
|
692 |
|
|
return query
|
693 |
|
|
|
694 |
|
|
def update(db, *args, **kw_args):
|
695 |
|
|
'''For params, see mk_update() and run_query()'''
|
696 |
|
|
recover = kw_args.pop('recover', None)
|
697 |
|
|
|
698 |
2791
|
aaronmk
|
return run_query(db, mk_update(db, *args, **kw_args), recover)
|
699 |
2402
|
aaronmk
|
|
700 |
135
|
aaronmk
|
def last_insert_id(db):
|
701 |
1849
|
aaronmk
|
module = util.root_module(db.db)
|
702 |
135
|
aaronmk
|
if module == 'psycopg2': return value(run_query(db, 'SELECT lastval()'))
|
703 |
|
|
elif module == 'MySQLdb': return db.insert_id()
|
704 |
|
|
else: return None
|
705 |
13
|
aaronmk
|
|
706 |
2394
|
aaronmk
|
def mk_flatten_mapping(db, into, cols, preserve=[], as_items=False):
|
707 |
2383
|
aaronmk
|
'''Creates a mapping from original column names (which may have collisions)
|
708 |
2415
|
aaronmk
|
to names that will be distinct among the columns' tables.
|
709 |
2383
|
aaronmk
|
This is meant to be used for several tables that are being joined together.
|
710 |
2415
|
aaronmk
|
@param cols The columns to combine. Duplicates will be removed.
|
711 |
|
|
@param into The table for the new columns.
|
712 |
2394
|
aaronmk
|
@param preserve [sql_gen.Col...] Columns not to rename. Note that these
|
713 |
|
|
columns will be included in the mapping even if they are not in cols.
|
714 |
|
|
The tables of the provided Col objects will be changed to into, so make
|
715 |
|
|
copies of them if you want to keep the original tables.
|
716 |
|
|
@param as_items Whether to return a list of dict items instead of a dict
|
717 |
2383
|
aaronmk
|
@return dict(orig_col=new_col, ...)
|
718 |
|
|
* orig_col: sql_gen.Col(orig_col_name, orig_table)
|
719 |
2392
|
aaronmk
|
* new_col: sql_gen.Col(orig_col_name, into)
|
720 |
|
|
* All mappings use the into table so its name can easily be
|
721 |
2383
|
aaronmk
|
changed for all columns at once
|
722 |
|
|
'''
|
723 |
2415
|
aaronmk
|
cols = lists.uniqify(cols)
|
724 |
|
|
|
725 |
2394
|
aaronmk
|
items = []
|
726 |
2389
|
aaronmk
|
for col in preserve:
|
727 |
2390
|
aaronmk
|
orig_col = copy.copy(col)
|
728 |
2392
|
aaronmk
|
col.table = into
|
729 |
2394
|
aaronmk
|
items.append((orig_col, col))
|
730 |
|
|
preserve = set(preserve)
|
731 |
|
|
for col in cols:
|
732 |
2716
|
aaronmk
|
if col not in preserve:
|
733 |
|
|
items.append((col, sql_gen.Col(str(col), into, col.srcs)))
|
734 |
2394
|
aaronmk
|
|
735 |
|
|
if not as_items: items = dict(items)
|
736 |
|
|
return items
|
737 |
2383
|
aaronmk
|
|
738 |
2393
|
aaronmk
|
def flatten(db, into, joins, cols, limit=None, start=None, **kw_args):
|
739 |
2391
|
aaronmk
|
'''For params, see mk_flatten_mapping()
|
740 |
|
|
@return See return value of mk_flatten_mapping()
|
741 |
|
|
'''
|
742 |
2394
|
aaronmk
|
items = mk_flatten_mapping(db, into, cols, as_items=True, **kw_args)
|
743 |
|
|
cols = [sql_gen.NamedCol(new.name, old) for old, new in items]
|
744 |
2786
|
aaronmk
|
run_query_into(db, mk_select(db, joins, cols, limit=limit, start=start),
|
745 |
2392
|
aaronmk
|
into=into)
|
746 |
2394
|
aaronmk
|
return dict(items)
|
747 |
2391
|
aaronmk
|
|
748 |
2751
|
aaronmk
|
def mk_track_data_error(db, errors_table, cols, value, error_code, error):
|
749 |
2810
|
aaronmk
|
assert cols != ()
|
750 |
|
|
|
751 |
2751
|
aaronmk
|
cols = map(sql_gen.to_name_only_col, cols)
|
752 |
|
|
|
753 |
|
|
columns_cols = ['column']
|
754 |
|
|
columns = sql_gen.NamedValues('columns', columns_cols,
|
755 |
|
|
[[c.name] for c in cols])
|
756 |
|
|
values_cols = ['value', 'error_code', 'error']
|
757 |
|
|
values = sql_gen.NamedValues('values', values_cols,
|
758 |
|
|
[value, error_code, error])
|
759 |
|
|
|
760 |
|
|
select_cols = columns_cols+values_cols
|
761 |
|
|
name_only_cols = map(sql_gen.to_name_only_col, select_cols)
|
762 |
2755
|
aaronmk
|
errors_table = sql_gen.NamedTable('errors', errors_table)
|
763 |
2751
|
aaronmk
|
joins = [columns, sql_gen.Join(values, type_='CROSS'),
|
764 |
|
|
sql_gen.Join(errors_table, dict(zip(name_only_cols, select_cols)),
|
765 |
|
|
sql_gen.filter_out)]
|
766 |
|
|
|
767 |
|
|
return mk_insert_select(db, errors_table, name_only_cols,
|
768 |
2787
|
aaronmk
|
mk_select(db, joins, select_cols, order_by=None))
|
769 |
2751
|
aaronmk
|
|
770 |
2810
|
aaronmk
|
def track_data_error(db, errors_table, cols, *args, **kw_args):
|
771 |
2758
|
aaronmk
|
'''
|
772 |
|
|
@param errors_table If None, does nothing.
|
773 |
|
|
'''
|
774 |
2810
|
aaronmk
|
if errors_table == None or cols == (): return
|
775 |
|
|
run_query(db, mk_track_data_error(db, errors_table, cols, *args, **kw_args),
|
776 |
2758
|
aaronmk
|
cacheable=True, log_level=4)
|
777 |
|
|
|
778 |
2704
|
aaronmk
|
def cast(db, type_, col, errors_table=None):
|
779 |
|
|
'''Casts an (unrenamed) column or value.
|
780 |
2769
|
aaronmk
|
If errors_table set and col has srcs, saves errors in errors_table (using
|
781 |
|
|
col's srcs attr as the source columns) and converts errors to warnings.
|
782 |
2820
|
aaronmk
|
@param col str|sql_gen.Col|sql_gen.Literal
|
783 |
2704
|
aaronmk
|
@param errors_table None|sql_gen.Table|str
|
784 |
|
|
'''
|
785 |
2820
|
aaronmk
|
col = sql_gen.as_Col(col)
|
786 |
2769
|
aaronmk
|
save_errors = (errors_table != None and isinstance(col, sql_gen.Col)
|
787 |
|
|
and col.srcs != ())
|
788 |
|
|
if not save_errors: # can't save errors
|
789 |
|
|
return sql_gen.CustomCode(col.to_str(db)+'::'+type_) # just cast
|
790 |
2704
|
aaronmk
|
|
791 |
|
|
assert not isinstance(col, sql_gen.NamedCol)
|
792 |
|
|
|
793 |
2770
|
aaronmk
|
errors_table = sql_gen.as_Table(errors_table)
|
794 |
|
|
srcs = map(sql_gen.to_name_only_col, col.srcs)
|
795 |
|
|
function_name = str(sql_gen.FunctionCall(type_, *srcs))
|
796 |
2704
|
aaronmk
|
function = sql_gen.TempFunction(function_name, db.autocommit)
|
797 |
|
|
|
798 |
2718
|
aaronmk
|
while True:
|
799 |
|
|
# Create function definition
|
800 |
|
|
query = '''\
|
801 |
2704
|
aaronmk
|
CREATE FUNCTION '''+function.to_str(db)+'''(value text)
|
802 |
|
|
RETURNS '''+type_+'''
|
803 |
|
|
LANGUAGE plpgsql
|
804 |
|
|
STRICT
|
805 |
|
|
AS $$
|
806 |
|
|
BEGIN
|
807 |
|
|
/* The explicit cast to the return type is needed to make the cast happen
|
808 |
|
|
inside the try block. (Implicit casts to the return type happen at the end
|
809 |
|
|
of the function, outside any block.) */
|
810 |
|
|
RETURN value::'''+type_+''';
|
811 |
|
|
EXCEPTION
|
812 |
|
|
WHEN data_exception THEN
|
813 |
|
|
-- Save error in errors table.
|
814 |
2751
|
aaronmk
|
-- Insert the value and error for *each* source column.
|
815 |
|
|
'''+mk_track_data_error(db, errors_table, srcs,
|
816 |
|
|
*map(sql_gen.CustomCode, ['value', 'SQLSTATE', 'SQLERRM']))+''';
|
817 |
2704
|
aaronmk
|
|
818 |
|
|
RAISE WARNING '%', SQLERRM;
|
819 |
|
|
RETURN NULL;
|
820 |
|
|
END;
|
821 |
|
|
$$;
|
822 |
|
|
'''
|
823 |
2718
|
aaronmk
|
|
824 |
|
|
# Create function
|
825 |
|
|
try:
|
826 |
|
|
run_query(db, query, recover=True, cacheable=True,
|
827 |
|
|
log_ignore_excs=(DuplicateFunctionException,))
|
828 |
|
|
break # successful
|
829 |
|
|
except DuplicateFunctionException:
|
830 |
2770
|
aaronmk
|
function.name = next_version(function.name)
|
831 |
|
|
# try again with next version of name
|
832 |
2704
|
aaronmk
|
|
833 |
|
|
return sql_gen.FunctionCall(function, col)
|
834 |
|
|
|
835 |
2414
|
aaronmk
|
##### Database structure queries
|
836 |
|
|
|
837 |
2426
|
aaronmk
|
def table_row_count(db, table, recover=None):
|
838 |
2786
|
aaronmk
|
return value(run_query(db, mk_select(db, table, [sql_gen.row_count],
|
839 |
2443
|
aaronmk
|
order_by=None, start=0), recover=recover, log_level=3))
|
840 |
2426
|
aaronmk
|
|
841 |
2414
|
aaronmk
|
def table_cols(db, table, recover=None):
|
842 |
|
|
return list(col_names(select(db, table, limit=0, order_by=None,
|
843 |
2443
|
aaronmk
|
recover=recover, log_level=4)))
|
844 |
2414
|
aaronmk
|
|
845 |
2291
|
aaronmk
|
def pkey(db, table, recover=None):
|
846 |
832
|
aaronmk
|
'''Assumed to be first column in table'''
|
847 |
2339
|
aaronmk
|
return table_cols(db, table, recover)[0]
|
848 |
832
|
aaronmk
|
|
849 |
2559
|
aaronmk
|
not_null_col = 'not_null_col'
|
850 |
2340
|
aaronmk
|
|
851 |
|
|
def table_not_null_col(db, table, recover=None):
|
852 |
|
|
'''Name assumed to be the value of not_null_col. If not found, uses pkey.'''
|
853 |
|
|
if not_null_col in table_cols(db, table, recover): return not_null_col
|
854 |
|
|
else: return pkey(db, table, recover)
|
855 |
|
|
|
856 |
853
|
aaronmk
|
def index_cols(db, table, index):
|
857 |
|
|
'''Can also use this for UNIQUE constraints, because a UNIQUE index is
|
858 |
|
|
automatically created. When you don't know whether something is a UNIQUE
|
859 |
|
|
constraint or a UNIQUE index, use this function.'''
|
860 |
1909
|
aaronmk
|
module = util.root_module(db.db)
|
861 |
|
|
if module == 'psycopg2':
|
862 |
|
|
return list(values(run_query(db, '''\
|
863 |
853
|
aaronmk
|
SELECT attname
|
864 |
866
|
aaronmk
|
FROM
|
865 |
|
|
(
|
866 |
|
|
SELECT attnum, attname
|
867 |
|
|
FROM pg_index
|
868 |
|
|
JOIN pg_class index ON index.oid = indexrelid
|
869 |
|
|
JOIN pg_class table_ ON table_.oid = indrelid
|
870 |
|
|
JOIN pg_attribute ON attrelid = indrelid AND attnum = ANY (indkey)
|
871 |
|
|
WHERE
|
872 |
2782
|
aaronmk
|
table_.relname = '''+db.esc_value(table)+'''
|
873 |
|
|
AND index.relname = '''+db.esc_value(index)+'''
|
874 |
866
|
aaronmk
|
UNION
|
875 |
|
|
SELECT attnum, attname
|
876 |
|
|
FROM
|
877 |
|
|
(
|
878 |
|
|
SELECT
|
879 |
|
|
indrelid
|
880 |
|
|
, (regexp_matches(indexprs, E':varattno (\\\\d+)', 'g'))[1]::int
|
881 |
|
|
AS indkey
|
882 |
|
|
FROM pg_index
|
883 |
|
|
JOIN pg_class index ON index.oid = indexrelid
|
884 |
|
|
JOIN pg_class table_ ON table_.oid = indrelid
|
885 |
|
|
WHERE
|
886 |
2782
|
aaronmk
|
table_.relname = '''+db.esc_value(table)+'''
|
887 |
|
|
AND index.relname = '''+db.esc_value(index)+'''
|
888 |
866
|
aaronmk
|
) s
|
889 |
|
|
JOIN pg_attribute ON attrelid = indrelid AND attnum = indkey
|
890 |
|
|
) s
|
891 |
853
|
aaronmk
|
ORDER BY attnum
|
892 |
2782
|
aaronmk
|
'''
|
893 |
|
|
, cacheable=True, log_level=4)))
|
894 |
1909
|
aaronmk
|
else: raise NotImplementedError("Can't list index columns for "+module+
|
895 |
|
|
' database')
|
896 |
853
|
aaronmk
|
|
897 |
464
|
aaronmk
|
def constraint_cols(db, table, constraint):
|
898 |
1849
|
aaronmk
|
module = util.root_module(db.db)
|
899 |
464
|
aaronmk
|
if module == 'psycopg2':
|
900 |
|
|
return list(values(run_query(db, '''\
|
901 |
|
|
SELECT attname
|
902 |
|
|
FROM pg_constraint
|
903 |
|
|
JOIN pg_class ON pg_class.oid = conrelid
|
904 |
|
|
JOIN pg_attribute ON attrelid = conrelid AND attnum = ANY (conkey)
|
905 |
|
|
WHERE
|
906 |
2783
|
aaronmk
|
relname = '''+db.esc_value(table)+'''
|
907 |
|
|
AND conname = '''+db.esc_value(constraint)+'''
|
908 |
464
|
aaronmk
|
ORDER BY attnum
|
909 |
2783
|
aaronmk
|
'''
|
910 |
|
|
)))
|
911 |
464
|
aaronmk
|
else: raise NotImplementedError("Can't list constraint columns for "+module+
|
912 |
|
|
' database')
|
913 |
|
|
|
914 |
2096
|
aaronmk
|
row_num_col = '_row_num'
|
915 |
|
|
|
916 |
2688
|
aaronmk
|
def add_index(db, exprs, table=None, unique=False):
|
917 |
|
|
'''Adds an index on column(s) or expression(s) if it doesn't already exist.
|
918 |
2538
|
aaronmk
|
Currently, only function calls are supported as expressions.
|
919 |
|
|
'''
|
920 |
2688
|
aaronmk
|
if not lists.is_seq(exprs): exprs = [exprs]
|
921 |
2538
|
aaronmk
|
|
922 |
2688
|
aaronmk
|
# Parse exprs
|
923 |
|
|
old_exprs = exprs[:]
|
924 |
|
|
exprs = []
|
925 |
|
|
cols = []
|
926 |
|
|
for i, expr in enumerate(old_exprs):
|
927 |
|
|
expr = copy.deepcopy(expr) # don't modify input!
|
928 |
2823
|
aaronmk
|
expr = sql_gen.as_Col(expr, table)
|
929 |
2688
|
aaronmk
|
|
930 |
2823
|
aaronmk
|
# Handle nullable columns
|
931 |
|
|
expr = sql_gen.ensure_not_null(db, expr)
|
932 |
|
|
|
933 |
2688
|
aaronmk
|
# Extract col
|
934 |
|
|
if isinstance(expr, sql_gen.FunctionCall):
|
935 |
|
|
col = expr.args[0]
|
936 |
|
|
expr = sql_gen.Expr(expr)
|
937 |
|
|
else: col = expr
|
938 |
2823
|
aaronmk
|
assert isinstance(col, sql_gen.Col)
|
939 |
2688
|
aaronmk
|
|
940 |
|
|
# Extract table
|
941 |
|
|
if table == None:
|
942 |
|
|
assert sql_gen.is_table_col(col)
|
943 |
|
|
table = col.table
|
944 |
|
|
|
945 |
|
|
col.table = None
|
946 |
|
|
|
947 |
|
|
exprs.append(expr)
|
948 |
|
|
cols.append(col)
|
949 |
2408
|
aaronmk
|
|
950 |
2688
|
aaronmk
|
table = sql_gen.as_Table(table)
|
951 |
|
|
index = sql_gen.Table(str(sql_gen.Col(','.join(map(str, cols)), table)))
|
952 |
|
|
|
953 |
|
|
str_ = 'CREATE'
|
954 |
|
|
if unique: str_ += ' UNIQUE'
|
955 |
|
|
str_ += ' INDEX '+index.to_str(db)+' ON '+table.to_str(db)+' ('+(
|
956 |
|
|
', '.join((v.to_str(db) for v in exprs)))+')'
|
957 |
|
|
|
958 |
|
|
try: run_query(db, str_, recover=True, cacheable=True, log_level=3)
|
959 |
2408
|
aaronmk
|
except DuplicateTableException: pass # index already existed
|
960 |
|
|
|
961 |
2686
|
aaronmk
|
def add_pkey(db, table, cols=None, recover=None):
|
962 |
|
|
'''Adds a primary key.
|
963 |
|
|
@param cols [sql_gen.Col,...] The columns in the primary key.
|
964 |
|
|
Defaults to the first column in the table.
|
965 |
2406
|
aaronmk
|
@pre The table must not already have a primary key.
|
966 |
|
|
'''
|
967 |
|
|
table = sql_gen.as_Table(table)
|
968 |
2686
|
aaronmk
|
if cols == None: cols = [pkey(db, table, recover)]
|
969 |
|
|
col_strs = [sql_gen.to_name_only_col(v).to_str(db) for v in cols]
|
970 |
2406
|
aaronmk
|
|
971 |
2781
|
aaronmk
|
run_query(db, 'ALTER TABLE '+table.to_str(db)+' ADD PRIMARY KEY ('
|
972 |
|
|
+(', '.join(col_strs))+')', recover=True, cacheable=True, log_level=3,
|
973 |
|
|
log_ignore_excs=(DuplicateTableException,))
|
974 |
2406
|
aaronmk
|
|
975 |
2772
|
aaronmk
|
already_indexed = object() # tells add_indexes() the pkey has already been added
|
976 |
|
|
|
977 |
|
|
def add_indexes(db, table, has_pkey=True):
|
978 |
|
|
'''Adds an index on all columns in a table.
|
979 |
|
|
@param has_pkey bool|already_indexed Whether a pkey instead of a regular
|
980 |
|
|
index should be added on the first column.
|
981 |
|
|
* If already_indexed, the pkey is assumed to have already been added
|
982 |
|
|
'''
|
983 |
|
|
cols = table_cols(db, table)
|
984 |
|
|
if has_pkey:
|
985 |
|
|
if has_pkey is not already_indexed: add_pkey(db, table)
|
986 |
|
|
cols = cols[1:]
|
987 |
|
|
for col in cols: add_index(db, col, table)
|
988 |
|
|
|
989 |
2086
|
aaronmk
|
def add_row_num(db, table):
|
990 |
2117
|
aaronmk
|
'''Adds a row number column to a table. Its name is in row_num_col. It will
|
991 |
|
|
be the primary key.'''
|
992 |
2320
|
aaronmk
|
table = sql_gen.as_Table(table).to_str(db)
|
993 |
2096
|
aaronmk
|
run_query(db, 'ALTER TABLE '+table+' ADD COLUMN '+row_num_col
|
994 |
2443
|
aaronmk
|
+' serial NOT NULL PRIMARY KEY', log_level=3)
|
995 |
2086
|
aaronmk
|
|
996 |
2760
|
aaronmk
|
def create_table(db, table, cols, has_pkey=True, col_indexes=True):
|
997 |
2675
|
aaronmk
|
'''Creates a table.
|
998 |
2681
|
aaronmk
|
@param cols [sql_gen.TypedCol,...] The column names and types
|
999 |
|
|
@param has_pkey If set, the first column becomes the primary key.
|
1000 |
2760
|
aaronmk
|
@param col_indexes bool|[ref]
|
1001 |
|
|
* If True, indexes will be added on all non-pkey columns.
|
1002 |
|
|
* If a list reference, [0] will be set to a function to do this.
|
1003 |
|
|
This can be used to delay index creation until the table is populated.
|
1004 |
2675
|
aaronmk
|
'''
|
1005 |
|
|
table = sql_gen.as_Table(table)
|
1006 |
|
|
|
1007 |
2681
|
aaronmk
|
if has_pkey:
|
1008 |
|
|
cols[0] = pkey = copy.copy(cols[0]) # don't modify input!
|
1009 |
|
|
pkey.type += ' NOT NULL PRIMARY KEY'
|
1010 |
|
|
|
1011 |
2675
|
aaronmk
|
str_ = 'CREATE TABLE '+table.to_str(db)+' (\n'
|
1012 |
2681
|
aaronmk
|
str_ += '\n, '.join(v.to_str(db) for v in cols)
|
1013 |
|
|
str_ += '\n);\n'
|
1014 |
2675
|
aaronmk
|
run_query(db, str_, cacheable=True, log_level=2)
|
1015 |
2760
|
aaronmk
|
|
1016 |
|
|
# Add indexes
|
1017 |
2773
|
aaronmk
|
if has_pkey: has_pkey = already_indexed
|
1018 |
|
|
def add_indexes_(): add_indexes(db, table, has_pkey)
|
1019 |
|
|
if isinstance(col_indexes, list): col_indexes[0] = add_indexes_ # defer
|
1020 |
|
|
elif col_indexes: add_indexes_() # add now
|
1021 |
2675
|
aaronmk
|
|
1022 |
2684
|
aaronmk
|
def vacuum(db, table):
|
1023 |
|
|
table = sql_gen.as_Table(table)
|
1024 |
|
|
db.with_autocommit(lambda: run_query(db, 'VACUUM ANALYZE '+table.to_str(db),
|
1025 |
|
|
log_level=3))
|
1026 |
|
|
|
1027 |
2732
|
aaronmk
|
def truncate(db, table, schema='public'):
|
1028 |
2777
|
aaronmk
|
table = sql_gen.as_Table(table, schema)
|
1029 |
2733
|
aaronmk
|
return run_query(db, 'TRUNCATE '+table.to_str(db)+' CASCADE')
|
1030 |
2732
|
aaronmk
|
|
1031 |
2729
|
aaronmk
|
def tables(db, schema_like='public', table_like='%', exact=False):
|
1032 |
|
|
if exact: compare = '='
|
1033 |
|
|
else: compare = 'LIKE'
|
1034 |
|
|
|
1035 |
1849
|
aaronmk
|
module = util.root_module(db.db)
|
1036 |
832
|
aaronmk
|
if module == 'psycopg2':
|
1037 |
2779
|
aaronmk
|
conds = [('schemaname', sql_gen.CompareCond(schema_like, compare)),
|
1038 |
|
|
('tablename', sql_gen.CompareCond(table_like, compare))]
|
1039 |
|
|
return values(select(db, 'pg_tables', ['tablename'], conds,
|
1040 |
|
|
order_by='tablename', log_level=4))
|
1041 |
1968
|
aaronmk
|
elif module == 'MySQLdb':
|
1042 |
2779
|
aaronmk
|
return values(run_query(db, 'SHOW TABLES LIKE '+db.esc_value(table_like)
|
1043 |
|
|
, cacheable=True, log_level=4))
|
1044 |
832
|
aaronmk
|
else: raise NotImplementedError("Can't list tables for "+module+' database')
|
1045 |
830
|
aaronmk
|
|
1046 |
2726
|
aaronmk
|
def table_exists(db, table):
|
1047 |
|
|
table = sql_gen.as_Table(table)
|
1048 |
2730
|
aaronmk
|
return list(tables(db, table.schema, table.name, exact=True)) != []
|
1049 |
2726
|
aaronmk
|
|
1050 |
|
|
def errors_table(db, table, if_exists=True):
|
1051 |
|
|
'''
|
1052 |
|
|
@param if_exists If set, returns None if the errors table doesn't exist
|
1053 |
|
|
@return None|sql_gen.Table
|
1054 |
|
|
'''
|
1055 |
|
|
table = sql_gen.as_Table(table)
|
1056 |
|
|
if table.srcs != (): table = table.srcs[0]
|
1057 |
|
|
|
1058 |
|
|
errors_table = sql_gen.suffixed_table(table, '.errors')
|
1059 |
|
|
if if_exists and not table_exists(db, errors_table): return None
|
1060 |
|
|
return errors_table
|
1061 |
|
|
|
1062 |
833
|
aaronmk
|
##### Database management
|
1063 |
|
|
|
1064 |
1968
|
aaronmk
|
def empty_db(db, schema='public', **kw_args):
|
1065 |
|
|
'''For kw_args, see tables()'''
|
1066 |
|
|
for table in tables(db, schema, **kw_args): truncate(db, table, schema)
|
1067 |
833
|
aaronmk
|
|
1068 |
832
|
aaronmk
|
##### Heuristic queries
|
1069 |
|
|
|
1070 |
2104
|
aaronmk
|
def put(db, table, row, pkey_=None, row_ct_ref=None):
|
1071 |
1554
|
aaronmk
|
'''Recovers from errors.
|
1072 |
2077
|
aaronmk
|
Only works under PostgreSQL (uses INSERT RETURNING).
|
1073 |
|
|
'''
|
1074 |
2642
|
aaronmk
|
row = sql_gen.ColDict(db, table, row)
|
1075 |
2104
|
aaronmk
|
if pkey_ == None: pkey_ = pkey(db, table, recover=True)
|
1076 |
|
|
|
1077 |
471
|
aaronmk
|
try:
|
1078 |
2149
|
aaronmk
|
cur = insert(db, table, row, pkey_, recover=True)
|
1079 |
1554
|
aaronmk
|
if row_ct_ref != None and cur.rowcount >= 0:
|
1080 |
|
|
row_ct_ref[0] += cur.rowcount
|
1081 |
|
|
return value(cur)
|
1082 |
471
|
aaronmk
|
except DuplicateKeyException, e:
|
1083 |
2653
|
aaronmk
|
row = sql_gen.ColDict(db, table,
|
1084 |
|
|
util.dict_subset_right_join(row, e.cols))
|
1085 |
|
|
return value(select(db, table, [pkey_], row, recover=True))
|
1086 |
471
|
aaronmk
|
|
1087 |
473
|
aaronmk
|
def get(db, table, row, pkey, row_ct_ref=None, create=False):
|
1088 |
830
|
aaronmk
|
'''Recovers from errors'''
|
1089 |
2209
|
aaronmk
|
try: return value(select(db, table, [pkey], row, limit=1, recover=True))
|
1090 |
14
|
aaronmk
|
except StopIteration:
|
1091 |
40
|
aaronmk
|
if not create: raise
|
1092 |
471
|
aaronmk
|
return put(db, table, row, pkey, row_ct_ref) # insert new row
|
1093 |
2078
|
aaronmk
|
|
1094 |
2593
|
aaronmk
|
def is_func_result(col):
|
1095 |
|
|
return col.table.name.find('(') >= 0 and col.name == 'result'
|
1096 |
|
|
|
1097 |
2592
|
aaronmk
|
def into_table_name(out_table, in_tables0, mapping, is_func):
|
1098 |
2615
|
aaronmk
|
def in_col_str(in_col):
|
1099 |
|
|
in_col = sql_gen.remove_col_rename(in_col)
|
1100 |
|
|
if isinstance(in_col, sql_gen.Col):
|
1101 |
|
|
table = in_col.table
|
1102 |
|
|
if table == in_tables0:
|
1103 |
|
|
in_col = sql_gen.to_name_only_col(in_col)
|
1104 |
|
|
elif is_func_result(in_col): in_col = table # omit col name
|
1105 |
|
|
return str(in_col)
|
1106 |
|
|
|
1107 |
2580
|
aaronmk
|
str_ = str(out_table)
|
1108 |
|
|
if is_func:
|
1109 |
2615
|
aaronmk
|
str_ += '('
|
1110 |
2580
|
aaronmk
|
|
1111 |
2615
|
aaronmk
|
try: value_in_col = mapping['value']
|
1112 |
|
|
except KeyError:
|
1113 |
2654
|
aaronmk
|
str_ += ', '.join((str(k)+'='+in_col_str(v)
|
1114 |
2615
|
aaronmk
|
for k, v in mapping.iteritems()))
|
1115 |
|
|
else: str_ += in_col_str(value_in_col)
|
1116 |
|
|
|
1117 |
|
|
str_ += ')'
|
1118 |
2812
|
aaronmk
|
else:
|
1119 |
|
|
out_col = 'rank'
|
1120 |
|
|
try: in_col = mapping[out_col]
|
1121 |
|
|
except KeyError: str_ += '_pkeys'
|
1122 |
|
|
else: # has a rank column, so hierarchical
|
1123 |
|
|
str_ += '['+str(out_col)+'='+in_col_str(in_col)+']'
|
1124 |
2580
|
aaronmk
|
return str_
|
1125 |
|
|
|
1126 |
2508
|
aaronmk
|
def put_table(db, out_table, in_tables, mapping, row_ct_ref=None, into=None,
|
1127 |
2805
|
aaronmk
|
default=None, is_func=False, on_error=exc.raise_):
|
1128 |
2078
|
aaronmk
|
'''Recovers from errors.
|
1129 |
|
|
Only works under PostgreSQL (uses INSERT RETURNING).
|
1130 |
2131
|
aaronmk
|
@param in_tables The main input table to select from, followed by a list of
|
1131 |
|
|
tables to join with it using the main input table's pkey
|
1132 |
2312
|
aaronmk
|
@param mapping dict(out_table_col=in_table_col, ...)
|
1133 |
2612
|
aaronmk
|
* out_table_col: str (*not* sql_gen.Col)
|
1134 |
|
|
* in_table_col: sql_gen.Col|literal-value
|
1135 |
2489
|
aaronmk
|
@param into The table to contain the output and input pkeys.
|
1136 |
2574
|
aaronmk
|
Defaults to `out_table.name+'_pkeys'`.
|
1137 |
2509
|
aaronmk
|
@param default The *output* column to use as the pkey for missing rows.
|
1138 |
|
|
If this output column does not exist in the mapping, uses None.
|
1139 |
2552
|
aaronmk
|
@param is_func Whether out_table is the name of a SQL function, not a table
|
1140 |
2312
|
aaronmk
|
@return sql_gen.Col Where the output pkeys are made available
|
1141 |
2078
|
aaronmk
|
'''
|
1142 |
2329
|
aaronmk
|
out_table = sql_gen.as_Table(out_table)
|
1143 |
2312
|
aaronmk
|
|
1144 |
2450
|
aaronmk
|
def log_debug(msg): db.log_debug(msg, level=1.5)
|
1145 |
2505
|
aaronmk
|
def col_ustr(str_):
|
1146 |
2567
|
aaronmk
|
return strings.repr_no_u(sql_gen.remove_col_rename(str_))
|
1147 |
2450
|
aaronmk
|
|
1148 |
2768
|
aaronmk
|
out_pkey = pkey(db, out_table, recover=True)
|
1149 |
|
|
out_pkey_col = sql_gen.as_Col(out_pkey, out_table)
|
1150 |
|
|
|
1151 |
|
|
if mapping == {}: # need at least one column for INSERT SELECT
|
1152 |
|
|
mapping = {out_pkey: None} # ColDict will replace with default value
|
1153 |
|
|
|
1154 |
2486
|
aaronmk
|
log_debug('********** New iteration **********')
|
1155 |
2505
|
aaronmk
|
log_debug('Inserting these input columns into '+strings.as_tt(
|
1156 |
|
|
out_table.to_str(db))+':\n'+strings.as_table(mapping, ustr=col_ustr))
|
1157 |
2463
|
aaronmk
|
|
1158 |
2382
|
aaronmk
|
# Create input joins from list of input tables
|
1159 |
|
|
in_tables_ = in_tables[:] # don't modify input!
|
1160 |
|
|
in_tables0 = in_tables_.pop(0) # first table is separate
|
1161 |
2735
|
aaronmk
|
errors_table_ = errors_table(db, in_tables0)
|
1162 |
2279
|
aaronmk
|
in_pkey = pkey(db, in_tables0, recover=True)
|
1163 |
2285
|
aaronmk
|
in_pkey_col = sql_gen.as_Col(in_pkey, in_tables0)
|
1164 |
2460
|
aaronmk
|
input_joins = [in_tables0]+[sql_gen.Join(v,
|
1165 |
|
|
{in_pkey: sql_gen.join_same_not_null}) for v in in_tables_]
|
1166 |
2131
|
aaronmk
|
|
1167 |
2592
|
aaronmk
|
if into == None:
|
1168 |
|
|
into = into_table_name(out_table, in_tables0, mapping, is_func)
|
1169 |
|
|
into = sql_gen.as_Table(into)
|
1170 |
|
|
|
1171 |
2702
|
aaronmk
|
# Set column sources
|
1172 |
|
|
in_cols = filter(sql_gen.is_table_col, mapping.values())
|
1173 |
|
|
for col in in_cols:
|
1174 |
|
|
if col.table == in_tables0: col.set_srcs(sql_gen.src_self)
|
1175 |
|
|
|
1176 |
2486
|
aaronmk
|
log_debug('Joining together input tables into temp table')
|
1177 |
2395
|
aaronmk
|
# Place in new table for speed and so don't modify input if values edited
|
1178 |
2584
|
aaronmk
|
in_table = sql_gen.Table('in')
|
1179 |
2702
|
aaronmk
|
mapping = dicts.join(mapping, flatten(db, in_table, input_joins, in_cols,
|
1180 |
|
|
preserve=[in_pkey_col], start=0))
|
1181 |
2395
|
aaronmk
|
input_joins = [in_table]
|
1182 |
2486
|
aaronmk
|
db.log_debug('Temp table: '+strings.as_tt(in_table.to_str(db)), level=2)
|
1183 |
2395
|
aaronmk
|
|
1184 |
2656
|
aaronmk
|
mapping = sql_gen.ColDict(db, out_table, mapping)
|
1185 |
|
|
# after applying dicts.join() because that returns a plain dict
|
1186 |
|
|
|
1187 |
2509
|
aaronmk
|
# Resolve default value column
|
1188 |
|
|
try: default = mapping[default]
|
1189 |
|
|
except KeyError:
|
1190 |
|
|
if default != None:
|
1191 |
|
|
db.log_debug('Default value column '
|
1192 |
|
|
+strings.as_tt(strings.repr_no_u(default))
|
1193 |
2511
|
aaronmk
|
+' does not exist in mapping, falling back to None', level=2.1)
|
1194 |
2509
|
aaronmk
|
default = None
|
1195 |
|
|
|
1196 |
2387
|
aaronmk
|
pkeys_names = [in_pkey, out_pkey]
|
1197 |
2236
|
aaronmk
|
pkeys_cols = [in_pkey_col, out_pkey_col]
|
1198 |
|
|
|
1199 |
2201
|
aaronmk
|
pkeys_table_exists_ref = [False]
|
1200 |
2420
|
aaronmk
|
def insert_into_pkeys(joins, cols):
|
1201 |
2786
|
aaronmk
|
query = mk_select(db, joins, cols, order_by=None, start=0)
|
1202 |
2201
|
aaronmk
|
if pkeys_table_exists_ref[0]:
|
1203 |
2786
|
aaronmk
|
insert_select(db, into, pkeys_names, query)
|
1204 |
2201
|
aaronmk
|
else:
|
1205 |
2786
|
aaronmk
|
run_query_into(db, query, into=into)
|
1206 |
2201
|
aaronmk
|
pkeys_table_exists_ref[0] = True
|
1207 |
|
|
|
1208 |
2429
|
aaronmk
|
limit_ref = [None]
|
1209 |
2380
|
aaronmk
|
conds = set()
|
1210 |
2811
|
aaronmk
|
distinct_on = sql_gen.ColDict(db, out_table)
|
1211 |
2325
|
aaronmk
|
def mk_main_select(joins, cols):
|
1212 |
2811
|
aaronmk
|
distinct_on_cols = [c.to_Col() for c in distinct_on.values()]
|
1213 |
|
|
return mk_select(db, joins, cols, conds, distinct_on_cols,
|
1214 |
2429
|
aaronmk
|
limit=limit_ref[0], start=0)
|
1215 |
2132
|
aaronmk
|
|
1216 |
2519
|
aaronmk
|
exc_strs = set()
|
1217 |
2309
|
aaronmk
|
def log_exc(e):
|
1218 |
2519
|
aaronmk
|
e_str = exc.str_(e, first_line_only=True)
|
1219 |
|
|
log_debug('Caught exception: '+e_str)
|
1220 |
|
|
assert e_str not in exc_strs # avoid infinite loops
|
1221 |
|
|
exc_strs.add(e_str)
|
1222 |
2735
|
aaronmk
|
|
1223 |
2451
|
aaronmk
|
def remove_all_rows():
|
1224 |
2450
|
aaronmk
|
log_debug('Returning NULL for all rows')
|
1225 |
2429
|
aaronmk
|
limit_ref[0] = 0 # just create an empty pkeys table
|
1226 |
2735
|
aaronmk
|
|
1227 |
2758
|
aaronmk
|
def ignore(in_col, value, e):
|
1228 |
|
|
track_data_error(db, errors_table_, in_col.srcs, value, e.cause.pgcode,
|
1229 |
|
|
e.cause.pgerror)
|
1230 |
|
|
|
1231 |
2545
|
aaronmk
|
in_col_str = strings.as_tt(repr(in_col))
|
1232 |
2544
|
aaronmk
|
db.log_debug('Adding index on '+in_col_str+' to enable fast filtering',
|
1233 |
|
|
level=2.5)
|
1234 |
2537
|
aaronmk
|
add_index(db, in_col)
|
1235 |
2735
|
aaronmk
|
|
1236 |
2545
|
aaronmk
|
log_debug('Ignoring rows with '+in_col_str+' = '
|
1237 |
|
|
+strings.as_tt(repr(value)))
|
1238 |
2758
|
aaronmk
|
def remove_rows(in_col, value, e):
|
1239 |
|
|
ignore(in_col, value, e)
|
1240 |
2378
|
aaronmk
|
cond = (in_col, sql_gen.CompareCond(value, '!='))
|
1241 |
|
|
assert cond not in conds # avoid infinite loops
|
1242 |
2380
|
aaronmk
|
conds.add(cond)
|
1243 |
2758
|
aaronmk
|
def invalid2null(in_col, value, e):
|
1244 |
|
|
ignore(in_col, value, e)
|
1245 |
2403
|
aaronmk
|
update(db, in_table, [(in_col, None)],
|
1246 |
|
|
sql_gen.ColValueCond(in_col, value))
|
1247 |
2245
|
aaronmk
|
|
1248 |
2589
|
aaronmk
|
def insert_pkeys_table(which):
|
1249 |
|
|
return sql_gen.Table(sql_gen.add_suffix(in_table.name,
|
1250 |
|
|
'_insert_'+which+'_pkeys'))
|
1251 |
|
|
insert_out_pkeys = insert_pkeys_table('out')
|
1252 |
|
|
insert_in_pkeys = insert_pkeys_table('in')
|
1253 |
|
|
|
1254 |
2206
|
aaronmk
|
# Do inserts and selects
|
1255 |
2642
|
aaronmk
|
join_cols = sql_gen.ColDict(db, out_table)
|
1256 |
2206
|
aaronmk
|
while True:
|
1257 |
2521
|
aaronmk
|
if limit_ref[0] == 0: # special case
|
1258 |
|
|
log_debug('Creating an empty pkeys table')
|
1259 |
2786
|
aaronmk
|
cur = run_query_into(db, mk_select(db, out_table, [out_pkey],
|
1260 |
2521
|
aaronmk
|
limit=limit_ref[0]), into=insert_out_pkeys)
|
1261 |
|
|
break # don't do main case
|
1262 |
|
|
|
1263 |
2303
|
aaronmk
|
has_joins = join_cols != {}
|
1264 |
|
|
|
1265 |
2305
|
aaronmk
|
# Prepare to insert new rows
|
1266 |
2325
|
aaronmk
|
insert_joins = input_joins[:] # don't modify original!
|
1267 |
2403
|
aaronmk
|
insert_args = dict(recover=True, cacheable=False)
|
1268 |
2303
|
aaronmk
|
if has_joins:
|
1269 |
2325
|
aaronmk
|
insert_joins.append(sql_gen.Join(out_table, join_cols,
|
1270 |
|
|
sql_gen.filter_out))
|
1271 |
|
|
else:
|
1272 |
2404
|
aaronmk
|
insert_args.update(dict(returning=out_pkey, into=insert_out_pkeys))
|
1273 |
2786
|
aaronmk
|
main_select = mk_main_select(insert_joins, mapping.values())
|
1274 |
2303
|
aaronmk
|
|
1275 |
2486
|
aaronmk
|
log_debug('Trying to insert new rows')
|
1276 |
2206
|
aaronmk
|
try:
|
1277 |
2518
|
aaronmk
|
cur = insert_select(db, out_table, mapping.keys(), main_select,
|
1278 |
|
|
**insert_args)
|
1279 |
2357
|
aaronmk
|
break # insert successful
|
1280 |
2206
|
aaronmk
|
except DuplicateKeyException, e:
|
1281 |
2309
|
aaronmk
|
log_exc(e)
|
1282 |
|
|
|
1283 |
2258
|
aaronmk
|
old_join_cols = join_cols.copy()
|
1284 |
2811
|
aaronmk
|
distinct_on.update(util.dict_subset(mapping, e.cols))
|
1285 |
2565
|
aaronmk
|
join_cols.update(util.dict_subset_right_join(mapping, e.cols))
|
1286 |
2486
|
aaronmk
|
log_debug('Ignoring existing rows, comparing on these columns:\n'
|
1287 |
2505
|
aaronmk
|
+strings.as_inline_table(join_cols, ustr=col_ustr))
|
1288 |
2258
|
aaronmk
|
assert join_cols != old_join_cols # avoid infinite loops
|
1289 |
2230
|
aaronmk
|
except NullValueException, e:
|
1290 |
2309
|
aaronmk
|
log_exc(e)
|
1291 |
|
|
|
1292 |
2230
|
aaronmk
|
out_col, = e.cols
|
1293 |
|
|
try: in_col = mapping[out_col]
|
1294 |
2356
|
aaronmk
|
except KeyError:
|
1295 |
2486
|
aaronmk
|
log_debug('Missing mapping for NOT NULL column '+out_col)
|
1296 |
2451
|
aaronmk
|
remove_all_rows()
|
1297 |
2758
|
aaronmk
|
else: remove_rows(in_col, None, e)
|
1298 |
2542
|
aaronmk
|
except FunctionValueException, e:
|
1299 |
|
|
log_exc(e)
|
1300 |
|
|
|
1301 |
|
|
func_name = e.name
|
1302 |
|
|
value = e.value
|
1303 |
|
|
for out_col, in_col in mapping.iteritems():
|
1304 |
2758
|
aaronmk
|
in_col = sql_gen.unwrap_func_call(in_col, func_name)
|
1305 |
|
|
invalid2null(in_col, value, e)
|
1306 |
2525
|
aaronmk
|
except MissingCastException, e:
|
1307 |
|
|
log_exc(e)
|
1308 |
|
|
|
1309 |
|
|
out_col = e.col
|
1310 |
2706
|
aaronmk
|
type_ = e.type
|
1311 |
|
|
|
1312 |
2724
|
aaronmk
|
log_debug('Casting '+strings.as_tt(out_col)+' input to '
|
1313 |
|
|
+strings.as_tt(type_))
|
1314 |
2735
|
aaronmk
|
def wrap_func(col): return cast(db, type_, col, errors_table_)
|
1315 |
2705
|
aaronmk
|
mapping[out_col] = sql_gen.wrap(wrap_func, mapping[out_col])
|
1316 |
2429
|
aaronmk
|
except DatabaseErrors, e:
|
1317 |
|
|
log_exc(e)
|
1318 |
|
|
|
1319 |
2808
|
aaronmk
|
log_debug('No handler for exception')
|
1320 |
|
|
on_error(e)
|
1321 |
2451
|
aaronmk
|
remove_all_rows()
|
1322 |
2358
|
aaronmk
|
# after exception handled, rerun loop with additional constraints
|
1323 |
2132
|
aaronmk
|
|
1324 |
2357
|
aaronmk
|
if row_ct_ref != None and cur.rowcount >= 0:
|
1325 |
|
|
row_ct_ref[0] += cur.rowcount
|
1326 |
|
|
|
1327 |
|
|
if has_joins:
|
1328 |
|
|
select_joins = input_joins+[sql_gen.Join(out_table, join_cols)]
|
1329 |
2486
|
aaronmk
|
log_debug('Getting output table pkeys of existing/inserted rows')
|
1330 |
2420
|
aaronmk
|
insert_into_pkeys(select_joins, pkeys_cols)
|
1331 |
2357
|
aaronmk
|
else:
|
1332 |
2404
|
aaronmk
|
add_row_num(db, insert_out_pkeys) # for joining with input pkeys
|
1333 |
2357
|
aaronmk
|
|
1334 |
2486
|
aaronmk
|
log_debug('Getting input table pkeys of inserted rows')
|
1335 |
2786
|
aaronmk
|
run_query_into(db, mk_main_select(input_joins, [in_pkey]),
|
1336 |
2404
|
aaronmk
|
into=insert_in_pkeys)
|
1337 |
|
|
add_row_num(db, insert_in_pkeys) # for joining with output pkeys
|
1338 |
2357
|
aaronmk
|
|
1339 |
2428
|
aaronmk
|
assert table_row_count(db, insert_out_pkeys) == table_row_count(db,
|
1340 |
|
|
insert_in_pkeys)
|
1341 |
|
|
|
1342 |
2486
|
aaronmk
|
log_debug('Combining output and input pkeys in inserted order')
|
1343 |
2404
|
aaronmk
|
pkey_joins = [insert_in_pkeys, sql_gen.Join(insert_out_pkeys,
|
1344 |
2357
|
aaronmk
|
{row_num_col: sql_gen.join_same_not_null})]
|
1345 |
2420
|
aaronmk
|
insert_into_pkeys(pkey_joins, pkeys_names)
|
1346 |
2357
|
aaronmk
|
|
1347 |
2486
|
aaronmk
|
db.log_debug('Adding pkey on pkeys table to enable fast joins', level=2.5)
|
1348 |
2594
|
aaronmk
|
add_pkey(db, into)
|
1349 |
2407
|
aaronmk
|
|
1350 |
2508
|
aaronmk
|
log_debug('Setting pkeys of missing rows to '+strings.as_tt(repr(default)))
|
1351 |
2489
|
aaronmk
|
missing_rows_joins = input_joins+[sql_gen.Join(into,
|
1352 |
2357
|
aaronmk
|
{in_pkey: sql_gen.join_same_not_null}, sql_gen.filter_out)]
|
1353 |
|
|
# must use join_same_not_null or query will take forever
|
1354 |
2420
|
aaronmk
|
insert_into_pkeys(missing_rows_joins,
|
1355 |
2508
|
aaronmk
|
[in_pkey_col, sql_gen.NamedCol(out_pkey, default)])
|
1356 |
2357
|
aaronmk
|
|
1357 |
2489
|
aaronmk
|
assert table_row_count(db, into) == table_row_count(db, in_table)
|
1358 |
2428
|
aaronmk
|
|
1359 |
2702
|
aaronmk
|
srcs = []
|
1360 |
|
|
if is_func: srcs = sql_gen.cols_srcs(in_cols)
|
1361 |
|
|
return sql_gen.Col(out_pkey, into, srcs)
|
1362 |
2115
|
aaronmk
|
|
1363 |
|
|
##### Data cleanup
|
1364 |
|
|
|
1365 |
2290
|
aaronmk
|
def cleanup_table(db, table, cols):
|
1366 |
2677
|
aaronmk
|
table = sql_gen.as_Table(table)
|
1367 |
|
|
cols = map(sql_gen.as_Col, cols)
|
1368 |
2115
|
aaronmk
|
|
1369 |
2677
|
aaronmk
|
expr = ('nullif(nullif(trim(both from %s), '+db.esc_value('')+'), '
|
1370 |
|
|
+db.esc_value(r'\N')+')')
|
1371 |
|
|
changes = [(v, sql_gen.CustomCode(expr % v.to_str(db)))
|
1372 |
|
|
for v in cols]
|
1373 |
2115
|
aaronmk
|
|
1374 |
2677
|
aaronmk
|
update(db, table, changes)
|