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Name Size Revision Age Author Comment
  _archive 1598 over 12 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  bin 3186 over 12 years Aaron Marcuse-Kubitza bin/map: by_col: Reuse existing out_db connecti...
  config 272 almost 13 years Aaron Marcuse-Kubitza Moved bien_password to new config dir
  inputs 3230 over 12 years Aaron Marcuse-Kubitza inputs/CTFS/maps/VegX.organisms.csv: Mapped Veg...
  lib 3227 over 12 years Aaron Marcuse-Kubitza xml_func.py: process(): Fixed bug where an eval...
  mappings 3229 over 12 years Aaron Marcuse-Kubitza mappings/VegX-VegBIEN.stems.csv: Sort the plant...
  schemas 3233 over 12 years Aaron Marcuse-Kubitza schemas/vegbien.sql: specimenreplicate: Removed...
  to_do 2547 over 12 years Aaron Marcuse-Kubitza to_do/timeline.doc: Updated to reflect the mont...
Makefile 10.4 KB 3156 over 12 years Aaron Marcuse-Kubitza main Makefile: python-Darwin: Added pip install...
README.TXT 2.96 KB 3205 over 12 years Aaron Marcuse-Kubitza README.TXT: Data import: Import data into VegBI...
map 1.21 KB 3140 over 12 years Aaron Marcuse-Kubitza top-level map: Added support for custom public ...

Latest revisions

# Date Author Comment
3233 07/05/2012 03:00 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: specimenreplicate: Removed no longer needed individual-column lookup indexes because the constraint-covering lookup indexes now handle lookups. This also avoids index bloat.

3232 07/05/2012 02:57 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: specimenreplicate: Added covering lookup indexes on the unique constraints to enable fast merge joins in column-based import

3231 07/05/2012 02:48 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: specimenreplicate: Added CHECK constraint which ensures that there is at least one key to sufficiently uniquely identify the specimenreplicate

3230 07/05/2012 02:44 PM Aaron Marcuse-Kubitza

inputs/CTFS/maps/VegX.organisms.csv: Mapped VegX sourceAccessionCode = VegBIEN plantobservation,specimenreplicate.sourceaccessioncode so that specimenreplicate would have a required key

3229 07/05/2012 02:38 PM Aaron Marcuse-Kubitza

mappings/VegX-VegBIEN.stems.csv: Sort the plantobservation.sourceaccessioncode/specimenreplicate.sourceaccessioncode mapping with the other _ifs so the adjacent node merging works properly and it gets created before _ignore removes voucherType

3228 07/05/2012 02:34 PM Aaron Marcuse-Kubitza

mappings/VegX-VegBIEN.stems.csv: Also map plantobservation.sourceaccessioncode to specimenreplicate.sourceaccessioncode so specimenreplicate always has a key and will never be underconstrained

3227 07/05/2012 02:12 PM Aaron Marcuse-Kubitza

xml_func.py: process(): Fixed bug where an evaluated XML function might create a node of the same name as an existing node, but these nodes would not be merged even though they referred to the same object, by merging siblings of a newly-evaluated (replaced) node if they have the same name

3226 07/05/2012 02:09 PM Aaron Marcuse-Kubitza

xml_dom.py: Added merge() and merge_adjacent()

3225 07/05/2012 02:08 PM Aaron Marcuse-Kubitza

xml_dom.py: replace_with_text(): Return the new node

3224 07/05/2012 12:33 PM Aaron Marcuse-Kubitza

mappings/VegX-VegBIEN.stems.csv: Indirect voucher mappings: Removed no longer needed ":[*_id/taxonoccurrence]" because a specimenreplicate is a taxonoccurrence, so it doesn't need to have an empty taxonoccurrence

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