Project

General

Profile

1 3077 aaronmk
# Database import/export
2
3
import exc
4
import dicts
5
import sql
6
import sql_gen
7
import strings
8
import util
9
10 3081 aaronmk
##### Data cleanup
11
12
def cleanup_table(db, table, cols):
13
    table = sql_gen.as_Table(table)
14
    cols = map(sql_gen.as_Col, cols)
15
16
    expr = ('nullif(nullif(trim(both from %s), '+db.esc_value('')+'), '
17
        +db.esc_value(r'\N')+')')
18
    changes = [(v, sql_gen.CustomCode(expr % v.to_str(db)))
19
        for v in cols]
20
21
    sql.update(db, table, changes, in_place=True)
22
23 3078 aaronmk
##### Error tracking
24
25
def track_data_error(db, errors_table, cols, value, error_code, error):
26
    '''
27
    @param errors_table If None, does nothing.
28
    '''
29
    if errors_table == None or cols == (): return
30
31
    for col in cols:
32
        try:
33
            sql.insert(db, errors_table, dict(column=col.name, value=value,
34
                error_code=error_code, error=error), recover=True,
35
                cacheable=True, log_level=4)
36
        except sql.DuplicateKeyException: pass
37
38
def cast(db, type_, col, errors_table=None):
39
    '''Casts an (unrenamed) column or value.
40
    If errors_table set and col has srcs, saves errors in errors_table (using
41
    col's srcs attr as the source columns) and converts errors to warnings.
42
    @param col str|sql_gen.Col|sql_gen.Literal
43
    @param errors_table None|sql_gen.Table|str
44
    '''
45
    col = sql_gen.as_Col(col)
46
47 3112 aaronmk
    # Don't convert exceptions to warnings for user-supplied constants
48
    if isinstance(col, sql_gen.Literal): return sql_gen.Cast(type_, col)
49
50 3078 aaronmk
    assert not isinstance(col, sql_gen.NamedCol)
51
52 3112 aaronmk
    save_errors = (errors_table != None and isinstance(col, sql_gen.Col)
53
        and col.srcs != ())
54
    function_name = type_
55
    if save_errors:
56
        errors_table = sql_gen.as_Table(errors_table)
57
58
        srcs = map(sql_gen.to_name_only_col, col.srcs)
59
        function_name = str(sql_gen.FunctionCall(function_name, *srcs))
60 3078 aaronmk
    function = db.TempFunction(function_name)
61
62
    while True:
63
        # Create function definition
64
        query = '''\
65
CREATE FUNCTION '''+function.to_str(db)+'''(value text)
66
RETURNS '''+type_+'''
67
LANGUAGE plpgsql
68 3112 aaronmk
'''
69
        if not save_errors: query += 'IMMUTABLE '
70
        query += '''\
71 3078 aaronmk
STRICT
72
AS $$
73
BEGIN
74
    /* The explicit cast to the return type is needed to make the cast happen
75
    inside the try block. (Implicit casts to the return type happen at the end
76
    of the function, outside any block.) */
77
    RETURN value::'''+type_+''';
78
EXCEPTION
79
    WHEN data_exception THEN
80 3112 aaronmk
'''
81
        if save_errors:
82
            errors_table_cols = map(sql_gen.Col,
83
                ['column', 'value', 'error_code', 'error'])
84
            query += '''\
85 3078 aaronmk
        -- Save error in errors table.
86
        DECLARE
87
            error_code text := SQLSTATE;
88
            error text := SQLERRM;
89
            "column" text;
90
        BEGIN
91
            -- Insert the value and error for *each* source column.
92
            FOR "column" IN
93
'''+sql.mk_select(db, sql_gen.NamedValues('c', None, [[c.name] for c in srcs]),
94 3298 aaronmk
    order_by=None)+'''
95 3078 aaronmk
            LOOP
96
                BEGIN
97
'''+sql.mk_insert_select(db, errors_table, errors_table_cols,
98
    sql_gen.Values(errors_table_cols).to_str(db))+''';
99
                EXCEPTION
100
                    WHEN unique_violation THEN NULL; -- continue to next row
101
                END;
102
            END LOOP;
103
        END;
104
105 3112 aaronmk
'''
106
        query += '''\
107 3078 aaronmk
        RAISE WARNING '%', SQLERRM;
108
        RETURN NULL;
109
END;
110
$$;
111
'''
112
113
        # Create function
114
        try:
115
            sql.run_query(db, query, recover=True, cacheable=True,
116
                log_ignore_excs=(sql.DuplicateException,))
117
            break # successful
118
        except sql.DuplicateException:
119
            function.name = sql.next_version(function.name)
120
            # try again with next version of name
121
122
    return sql_gen.FunctionCall(function, col)
123
124
def cast_temp_col(db, type_, col, errors_table=None):
125
    '''Like cast(), but creates a new column with the cast values if the input
126
    is a column.
127
    @return The new column or cast value
128
    '''
129
    def cast_(col): return cast(db, type_, col, errors_table)
130
131
    try: col = sql_gen.underlying_col(col)
132
    except sql_gen.NoUnderlyingTableException: return sql_gen.wrap(cast_, col)
133
134
    table = col.table
135 3173 aaronmk
    new_col = sql_gen.suffixed_col(col, '::'+strings.first_word(type_))
136 3078 aaronmk
    expr = cast_(col)
137
138
    # Add column
139
    new_typed_col = sql_gen.TypedCol(new_col.name, type_)
140 3174 aaronmk
    sql.add_col(db, table, new_typed_col, comment=repr(col)+'::'+type_)
141 3078 aaronmk
    new_col.name = new_typed_col.name # propagate any renaming
142
143 3110 aaronmk
    sql.update(db, table, [(new_col, expr)], in_place=True, recover=True)
144 3078 aaronmk
145
    return new_col
146
147
def errors_table(db, table, if_exists=True):
148
    '''
149
    @param if_exists If set, returns None if the errors table doesn't exist
150
    @return None|sql_gen.Table
151
    '''
152
    table = sql_gen.as_Table(table)
153
    if table.srcs != (): table = table.srcs[0]
154
155
    errors_table = sql_gen.suffixed_table(table, '.errors')
156
    if if_exists and not sql.table_exists(db, errors_table): return None
157
    return errors_table
158
159
##### Import
160
161 3077 aaronmk
def put(db, table, row, pkey_=None, row_ct_ref=None):
162
    '''Recovers from errors.
163
    Only works under PostgreSQL (uses INSERT RETURNING).
164
    '''
165
    row = sql_gen.ColDict(db, table, row)
166
    if pkey_ == None: pkey_ = sql.pkey(db, table, recover=True)
167
168
    try:
169 3131 aaronmk
        cur = sql.insert(db, table, row, pkey_, recover=True, log_level=3.5)
170 3077 aaronmk
        if row_ct_ref != None and cur.rowcount >= 0:
171
            row_ct_ref[0] += cur.rowcount
172
        return sql.value(cur)
173
    except sql.DuplicateKeyException, e:
174
        row = sql_gen.ColDict(db, table,
175
            util.dict_subset_right_join(row, e.cols))
176 3131 aaronmk
        return sql.value(sql.select(db, table, [pkey_], row, recover=True,
177
            log_level=3.5))
178 3208 aaronmk
    except sql.NullValueException: return None
179 3077 aaronmk
180
def get(db, table, row, pkey, row_ct_ref=None, create=False):
181
    '''Recovers from errors'''
182
    try:
183
        return sql.value(sql.select(db, table, [pkey], row, limit=1,
184
            recover=True))
185
    except StopIteration:
186
        if not create: raise
187
        return put(db, table, row, pkey, row_ct_ref) # insert new row
188
189
def is_func_result(col):
190
    return col.table.name.find('(') >= 0 and col.name == 'result'
191
192
def into_table_name(out_table, in_tables0, mapping, is_func):
193
    def in_col_str(in_col):
194
        in_col = sql_gen.remove_col_rename(in_col)
195
        if isinstance(in_col, sql_gen.Col):
196
            table = in_col.table
197
            if table == in_tables0:
198
                in_col = sql_gen.to_name_only_col(in_col)
199
            elif is_func_result(in_col): in_col = table # omit col name
200
        return str(in_col)
201
202
    str_ = str(out_table)
203
    if is_func:
204
        str_ += '('
205
206
        try: value_in_col = mapping['value']
207
        except KeyError:
208
            str_ += ', '.join((str(k)+'='+in_col_str(v)
209
                for k, v in mapping.iteritems()))
210
        else: str_ += in_col_str(value_in_col)
211
212
        str_ += ')'
213
    else:
214
        out_col = 'rank'
215
        try: in_col = mapping[out_col]
216
        except KeyError: str_ += '_pkeys'
217
        else: # has a rank column, so hierarchical
218
            str_ += '['+str(out_col)+'='+in_col_str(in_col)+']'
219
    return str_
220
221
def put_table(db, out_table, in_tables, mapping, row_ct_ref=None, into=None,
222
    default=None, is_func=False, on_error=exc.raise_):
223
    '''Recovers from errors.
224
    Only works under PostgreSQL (uses INSERT RETURNING).
225
    IMPORTANT: Must be run at the *beginning* of a transaction.
226
    @param in_tables The main input table to select from, followed by a list of
227
        tables to join with it using the main input table's pkey
228
    @param mapping dict(out_table_col=in_table_col, ...)
229
        * out_table_col: str (*not* sql_gen.Col)
230
        * in_table_col: sql_gen.Col|literal-value
231
    @param into The table to contain the output and input pkeys.
232
        Defaults to `out_table.name+'_pkeys'`.
233
    @param default The *output* column to use as the pkey for missing rows.
234
        If this output column does not exist in the mapping, uses None.
235
    @param is_func Whether out_table is the name of a SQL function, not a table
236
    @return sql_gen.Col Where the output pkeys are made available
237
    '''
238
    out_table = sql_gen.as_Table(out_table)
239
240
    def log_debug(msg): db.log_debug(msg, level=1.5)
241
    def col_ustr(str_):
242
        return strings.repr_no_u(sql_gen.remove_col_rename(str_))
243
244
    log_debug('********** New iteration **********')
245
    log_debug('Inserting these input columns into '+strings.as_tt(
246
        out_table.to_str(db))+':\n'+strings.as_table(mapping, ustr=col_ustr))
247
248
    is_function = sql.function_exists(db, out_table)
249
250
    if is_function: out_pkey = 'result'
251
    else: out_pkey = sql.pkey(db, out_table, recover=True)
252
    out_pkey_col = sql_gen.as_Col(out_pkey, out_table)
253
254
    if mapping == {}: # need at least one column for INSERT SELECT
255
        mapping = {out_pkey: None} # ColDict will replace with default value
256
257
    # Create input joins from list of input tables
258
    in_tables_ = in_tables[:] # don't modify input!
259
    in_tables0 = in_tables_.pop(0) # first table is separate
260 3078 aaronmk
    errors_table_ = errors_table(db, in_tables0)
261 3077 aaronmk
    in_pkey = sql.pkey(db, in_tables0, recover=True)
262
    in_pkey_col = sql_gen.as_Col(in_pkey, in_tables0)
263
    input_joins = [in_tables0]+[sql_gen.Join(v,
264
        {in_pkey: sql_gen.join_same_not_null}) for v in in_tables_]
265
266
    if into == None:
267
        into = into_table_name(out_table, in_tables0, mapping, is_func)
268
    into = sql_gen.as_Table(into)
269
270
    # Set column sources
271
    in_cols = filter(sql_gen.is_table_col, mapping.values())
272
    for col in in_cols:
273
        if col.table == in_tables0: col.set_srcs(sql_gen.src_self)
274
275
    log_debug('Joining together input tables into temp table')
276
    # Place in new table for speed and so don't modify input if values edited
277
    in_table = sql_gen.Table('in')
278
    mapping = dicts.join(mapping, sql.flatten(db, in_table, input_joins,
279 3298 aaronmk
        in_cols, preserve=[in_pkey_col]))
280 3077 aaronmk
    input_joins = [in_table]
281
    db.log_debug('Temp table: '+strings.as_tt(in_table.to_str(db)), level=2)
282
283
    mapping = sql_gen.ColDict(db, out_table, mapping)
284
        # after applying dicts.join() because that returns a plain dict
285
286
    # Resolve default value column
287
    if default != None:
288
        try: default = mapping[default]
289
        except KeyError:
290
            db.log_debug('Default value column '
291
                +strings.as_tt(strings.repr_no_u(default))
292
                +' does not exist in mapping, falling back to None', level=2.1)
293
            default = None
294
295 3287 aaronmk
    # Save default values for all rows since in_table may have rows deleted
296
    full_in_table = sql_gen.suffixed_table(in_table, '_full')
297
    full_in_table_cols = [in_pkey_col]
298
    if default != None:
299
        full_in_table_cols.append(default)
300
        default = sql_gen.with_table(default, full_in_table)
301
    sql.run_query_into(db, sql.mk_select(db, in_table, full_in_table_cols,
302 3304 aaronmk
        order_by=None), into=full_in_table, add_pkey_=True)
303 3287 aaronmk
304 3077 aaronmk
    pkeys_names = [in_pkey, out_pkey]
305
    pkeys_cols = [in_pkey_col, out_pkey_col]
306
307
    pkeys_table_exists_ref = [False]
308 3289 aaronmk
    def insert_into_pkeys(joins, cols, distinct=False, **kw_args):
309
        distinct_on = []
310
        if distinct: distinct_on=[in_pkey_col]
311
        query = sql.mk_select(db, joins, cols, distinct_on=distinct_on,
312 3298 aaronmk
            order_by=None)
313 3077 aaronmk
314
        if pkeys_table_exists_ref[0]:
315 3289 aaronmk
            sql.insert_select(db, into, pkeys_names, query, **kw_args)
316 3077 aaronmk
        else:
317 3304 aaronmk
            sql.run_query_into(db, query, into=into, add_pkey_=True, **kw_args)
318 3077 aaronmk
            pkeys_table_exists_ref[0] = True
319
320
    limit_ref = [None]
321 3106 aaronmk
    insert_in_table = in_table
322 3144 aaronmk
    insert_in_tables = [insert_in_table]
323 3077 aaronmk
    conds = set()
324
    distinct_on = sql_gen.ColDict(db, out_table)
325
    def mk_main_select(joins, cols):
326 3106 aaronmk
        conds_ = [(sql_gen.with_table(k, insert_in_table), v) for k, v in conds]
327
        return sql.mk_select(db, joins, cols, conds_, limit=limit_ref[0],
328 3298 aaronmk
            order_by=None)
329 3077 aaronmk
330
    exc_strs = set()
331
    def log_exc(e):
332
        e_str = exc.str_(e, first_line_only=True)
333
        log_debug('Caught exception: '+e_str)
334
        assert e_str not in exc_strs # avoid infinite loops
335
        exc_strs.add(e_str)
336
337
    def remove_all_rows():
338
        log_debug('Ignoring all rows')
339
        limit_ref[0] = 0 # just create an empty pkeys table
340
341 3294 aaronmk
    not_null_cols = set()
342 3077 aaronmk
    def ignore(in_col, value, e):
343 3078 aaronmk
        track_data_error(db, errors_table_, in_col.srcs, value,
344 3077 aaronmk
            e.cause.pgcode, e.cause.pgerror)
345
        log_debug('Ignoring rows with '+strings.as_tt(repr(in_col))+' = '
346
            +strings.as_tt(repr(value)))
347 3294 aaronmk
348
        if value != None and in_col not in not_null_cols:
349
            # Try just mapping the value to NULL
350
            sql.update(db, insert_in_table, [(in_col, None)],
351
                sql_gen.ColValueCond(in_col, value))
352 3293 aaronmk
        else:
353 3294 aaronmk
            for table in insert_in_tables: # must delete from all copies
354
                sql.add_index(db, in_col, table) # enable fast filtering
355
                filter_ = sql_gen.ColValueCond(in_col, value)
356
                sql.delete(db, table, filter_)
357
            if value == None: not_null_cols.add(in_col)
358 3077 aaronmk
359
    def insert_pkeys_table(which):
360
        return sql_gen.Table(sql_gen.concat(in_table.name,
361
            '_insert_'+which+'_pkeys'))
362
    insert_out_pkeys = insert_pkeys_table('out')
363
    insert_in_pkeys = insert_pkeys_table('in')
364
365
    # Do inserts and selects
366
    join_cols = sql_gen.ColDict(db, out_table)
367
    while True:
368
        if limit_ref[0] == 0: # special case
369
            log_debug('Creating an empty pkeys table')
370
            cur = sql.run_query_into(db, sql.mk_select(db, out_table,
371
                [out_pkey], limit=limit_ref[0]), into=insert_out_pkeys)
372
            break # don't do main case
373
374
        has_joins = join_cols != {}
375
376
        log_debug('Trying to insert new rows')
377
378
        # Prepare to insert new rows
379 3291 aaronmk
        if is_function:
380
            log_debug('Calling function on input rows')
381
            args = dict(((k.name, v) for k, v in mapping.iteritems()))
382
            func_call = sql_gen.NamedCol(out_pkey,
383
                sql_gen.FunctionCall(out_table, **args))
384 3077 aaronmk
        else:
385 3291 aaronmk
            insert_args = dict(recover=True, cacheable=False)
386
            if has_joins:
387
                insert_args.update(dict(ignore=True))
388
            else:
389
                insert_args.update(dict(returning=out_pkey,
390
                    into=insert_out_pkeys))
391
            main_select = mk_main_select([insert_in_table], [sql_gen.with_table(
392
                c, insert_in_table) for c in mapping.values()])
393 3077 aaronmk
394 3292 aaronmk
        try:
395
            cur = None
396 3077 aaronmk
            if is_function:
397 3290 aaronmk
                insert_into_pkeys(input_joins, [in_pkey_col, func_call],
398
                    recover=True)
399 3077 aaronmk
            else:
400 3292 aaronmk
                cur = sql.insert_select(db, out_table, mapping.keys(),
401 3077 aaronmk
                    main_select, **insert_args)
402
            break # insert successful
403
        except sql.MissingCastException, e:
404
            log_exc(e)
405
406
            out_col = e.col
407
            type_ = e.type
408
409
            log_debug('Casting '+strings.as_tt(out_col)+' input to '
410
                +strings.as_tt(type_))
411 3111 aaronmk
            in_col = mapping[out_col]
412
            while True:
413
                try:
414
                    mapping[out_col] = cast_temp_col(db, type_, in_col,
415
                        errors_table_)
416
                    break # cast successful
417
                except sql.InvalidValueException, e:
418
                    log_exc(e)
419
420 3294 aaronmk
                    ignore(in_col, e.value, e)
421 3077 aaronmk
        except sql.DuplicateKeyException, e:
422
            log_exc(e)
423
424 3274 aaronmk
            # Different rows violating different unique constraints not
425
            # supported
426
            assert not join_cols
427
            assert not distinct_on
428
429 3077 aaronmk
            distinct_on.update(util.dict_subset(mapping, e.cols))
430
            join_cols.update(util.dict_subset_right_join(mapping, e.cols))
431
            log_debug('Ignoring existing rows, comparing on these columns:\n'
432
                +strings.as_inline_table(join_cols, ustr=col_ustr))
433 3102 aaronmk
434
            # Uniquify input table to avoid internal duplicate keys
435
            insert_in_table = sql.distinct_table(db, insert_in_table,
436
                filter(sql_gen.is_table_col, distinct_on.values()))
437 3144 aaronmk
            insert_in_tables.append(insert_in_table)
438 3077 aaronmk
        except sql.NullValueException, e:
439
            log_exc(e)
440
441
            out_col, = e.cols
442
            try: in_col = mapping[out_col]
443
            except KeyError:
444
                log_debug('Missing mapping for NOT NULL column '+out_col)
445
                remove_all_rows()
446 3294 aaronmk
            else: ignore(in_col, None, e)
447 3077 aaronmk
        except sql.DatabaseErrors, e:
448
            log_exc(e)
449
450
            log_debug('No handler for exception')
451
            on_error(e)
452
            remove_all_rows()
453
        # after exception handled, rerun loop with additional constraints
454
455
    if cur != None and row_ct_ref != None and cur.rowcount >= 0:
456
        row_ct_ref[0] += cur.rowcount
457
458
    if is_function: pass # pkeys table already created
459
    elif has_joins:
460
        select_joins = input_joins+[sql_gen.Join(out_table, join_cols)]
461
        log_debug('Getting output table pkeys of existing/inserted rows')
462
        insert_into_pkeys(select_joins, pkeys_cols, distinct=True)
463
    else:
464
        sql.add_row_num(db, insert_out_pkeys) # for joining with input pkeys
465
466
        log_debug('Getting input table pkeys of inserted rows')
467 3285 aaronmk
        # Note that mk_main_select() does not use ORDER BY. Instead, assume that
468
        # since the SELECT query is identical to the one used in INSERT SELECT,
469
        # its rows will be retrieved in the same order.
470 3077 aaronmk
        sql.run_query_into(db, mk_main_select(input_joins, [in_pkey]),
471
            into=insert_in_pkeys)
472
        sql.add_row_num(db, insert_in_pkeys) # for joining with output pkeys
473
474
        assert sql.table_row_count(db, insert_out_pkeys) == sql.table_row_count(
475
            db, insert_in_pkeys)
476
477
        log_debug('Combining output and input pkeys in inserted order')
478
        pkey_joins = [insert_in_pkeys, sql_gen.Join(insert_out_pkeys,
479
            {sql.row_num_col: sql_gen.join_same_not_null})]
480
        insert_into_pkeys(pkey_joins, pkeys_names)
481
482
        sql.empty_temp(db, [insert_out_pkeys, insert_in_pkeys])
483
484 3187 aaronmk
    if not is_function:
485
        log_debug('Setting pkeys of missing rows to '
486
            +strings.as_tt(repr(default)))
487 3287 aaronmk
        missing_rows_joins = [full_in_table, sql_gen.Join(into,
488 3187 aaronmk
            {in_pkey: sql_gen.join_same_not_null}, sql_gen.filter_out)]
489
            # must use join_same_not_null or query will take forever
490
        insert_into_pkeys(missing_rows_joins,
491 3287 aaronmk
            [sql_gen.Col(in_pkey, full_in_table),
492
            sql_gen.NamedCol(out_pkey, default)])
493 3187 aaronmk
    # otherwise, there is already an entry for every row
494 3077 aaronmk
495 3288 aaronmk
    assert (sql.table_row_count(db, into)
496
        == sql.table_row_count(db, full_in_table))
497 3077 aaronmk
498 3288 aaronmk
    sql.empty_temp(db, insert_in_tables+[full_in_table])
499 3077 aaronmk
500
    srcs = []
501
    if is_func: srcs = sql_gen.cols_srcs(in_cols)
502
    return sql_gen.Col(out_pkey, into, srcs)