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Revision 3941

mappings: Removed no longer used for_review/VegBIEN-DwC2.specimens.csv

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mappings/for_review/VegBIEN-DwC2.specimens.csv
1
VegBIEN:,DwC,Comments,Source,Order within table
2
//location/elevation,maximumElevationInMeters,,http://rs.tdwg.org/dwc/terms/#maximumElevationInMeters,72
3
//location/elevation,minimumElevationInMeters,,http://rs.tdwg.org/dwc/terms/#minimumElevationInMeters,71
4
//location/elevationrange,minimumElevationInMeters,,http://rs.tdwg.org/dwc/terms/#minimumElevationInMeters,71
5
//location/elevationrange,maximumElevationInMeters,,http://rs.tdwg.org/dwc/terms/#maximumElevationInMeters,72
6
//location/elevationrange,minimumElevationInMeters,,http://rs.tdwg.org/dwc/terms/#minimumElevationInMeters,71
7
//locationdetermination/coordsaccuracy,coordinateUncertaintyInMeters,,http://rs.tdwg.org/dwc/terms/#coordinateUncertaintyInMeters,88
8
//locationdetermination/coordsaccuracy,coordinatePrecision,,http://rs.tdwg.org/dwc/terms/#coordinatePrecision,89
9
//locationdetermination/footprintgeometry_dwc,footprintWKT,,http://rs.tdwg.org/dwc/terms/#footprintWKT,91
10
//locationdetermination/latitude,decimalLatitude,,http://rs.tdwg.org/dwc/terms/#decimalLatitude,85
11
//locationdetermination/latitude,verbatimLatitude,,http://rs.tdwg.org/dwc/terms/#verbatimLatitude,81
12
//locationdetermination/longitude,decimalLongitude,,http://rs.tdwg.org/dwc/terms/#decimalLongitude,86
13
//locationdetermination/longitude,verbatimLongitude,,http://rs.tdwg.org/dwc/terms/#verbatimLongitude,82
14
//locationdetermination/namedplace_id[rank=county]/placename,county,,http://rs.tdwg.org/dwc/terms/#county,66
15
//locationdetermination/namedplace_id[rank=stateProvince]/placename,stateProvince,,http://rs.tdwg.org/dwc/terms/#stateProvince,65
16
//locationdetermination/namedplace_id[rank=country]/placename,country,,http://rs.tdwg.org/dwc/terms/#country,63
17
//locationdetermination/namedplace_id[rank=continent]/placename,continent,,http://rs.tdwg.org/dwc/terms/#continent,59
18
//aggregateoccurrence/collectiondate/_*/date,eventDate,,http://rs.tdwg.org/dwc/terms/#eventDate,44
19
//aggregateoccurrence/notes,fieldNotes,,http://rs.tdwg.org/dwc/terms/#fieldNotes,54
20
"//plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]/definedvalue",sex,"Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",http://rs.tdwg.org/dwc/terms/#sex,26
21
//specimenreplicate/catalognumber_dwc,catalogNumber,,http://rs.tdwg.org/dwc/terms/#catalogNumber,20
22
//specimenreplicate/collectioncode_dwc,collectionCode,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,http://rs.tdwg.org/dwc/terms/#collectionCode,12
23
//specimenreplicate/collectionnumber,recordNumber,,http://rs.tdwg.org/dwc/terms/#recordNumber,22
24
//specimenreplicate/collectionnumber,collectionID,,http://rs.tdwg.org/dwc/terms/#collectionID,9
25
//specimenreplicate/collectionnumber,fieldNumber,,http://rs.tdwg.org/dwc/terms/#fieldNumber,53
26
//specimenreplicate/growthform,establishmentMeans,,http://rs.tdwg.org/dwc/terms/#establishmentMeans,30
27
//party/organizationname,institutionCode,,http://rs.tdwg.org/dwc/terms/#institutionCode,11
28
//specimenreplicate/iscultivated,establishmentMeans,,http://rs.tdwg.org/dwc/terms/#establishmentMeans,30
29
//specimenreplicate/isnative,establishmentMeans,,http://rs.tdwg.org/dwc/terms/#establishmentMeans,30
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//specimenreplicate/sourceaccessioncode,occurrenceID,,http://rs.tdwg.org/dwc/terms/#occurrenceID,19
31
//specimenreplicate/verbatimcollectorname,recordedBy,,http://rs.tdwg.org/dwc/terms/#recordedBy,23
32
//taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date,dateIdentified,,http://rs.tdwg.org/dwc/terms/#dateIdentified,120
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//taxonoccurrence/taxondetermination[role=identifier]/notes,taxonRemarks,,http://rs.tdwg.org/dwc/terms/#taxonRemarks,158
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//taxonoccurrence/taxondetermination[role=identifier]/*_id/party/givenname,identifiedBy,,http://rs.tdwg.org/dwc/terms/#identifiedBy,119
35
//taxonoccurrence/taxondetermination[role=identifier]/*_id/party/middlename,identifiedBy,,http://rs.tdwg.org/dwc/terms/#identifiedBy,119
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//taxonoccurrence/taxondetermination[role=identifier]/*_id/party/surname,identifiedBy,,http://rs.tdwg.org/dwc/terms/#identifiedBy,119
37
//plantconcept/plantname_id[rank=binomial]/plantname,scientificName,,http://rs.tdwg.org/dwc/terms/#scientificName,134
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//plantconcept/plantname_id[rank=authority]/plantname,scientificNameAuthorship,,http://rs.tdwg.org/dwc/terms/#scientificNameAuthorship,153
39
//plantconcept/plantname_id[rank=subspecies]/plantname,infraspecificEpithet,,http://rs.tdwg.org/dwc/terms/#infraspecificEpithet,150
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//plantconcept/plantname_id[rank=species]/plantname,specificEpithet,,http://rs.tdwg.org/dwc/terms/#specificEpithet,149
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//plantconcept/plantname_id[rank=genus]/plantname,genus,,http://rs.tdwg.org/dwc/terms/#genus,147
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//plantconcept/plantname_id[rank=family]/plantname,family,,http://rs.tdwg.org/dwc/terms/#family,146
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//plantconcept/plantname_id[rank=order]/plantname,order,,http://rs.tdwg.org/dwc/terms/#order,145
44
//plantconcept/plantname_id[rank=class]/plantname,class,,http://rs.tdwg.org/dwc/terms/#class,144
45
//plantconcept/plantname_id[rank=subkingdom]/plantname,phylum,,http://rs.tdwg.org/dwc/terms/#phylum,143
46
//plantconcept/plantname_id[rank=kingdom]/plantname,kingdom,,http://rs.tdwg.org/dwc/terms/#kingdom,142
47
//locationevent/waterdepth,maximumDepthInMeters,,http://rs.tdwg.org/dwc/terms/#maximumDepthInMeters,75
48
//locationevent/waterdepth,minimumDepthInMeters,,http://rs.tdwg.org/dwc/terms/#minimumDepthInMeters,74
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//location/locationnarrative,locality,,http://rs.tdwg.org/dwc/terms/#locality,68
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//location/locationnarrative,verbatimLocality,,http://rs.tdwg.org/dwc/terms/#verbatimLocality,69
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"//location/locationnarrative/_label[label=""habitat""]/value",habitat,"Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",http://rs.tdwg.org/dwc/terms/#habitat,52
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//location/sourceaccessioncode,occurrenceID,,http://rs.tdwg.org/dwc/terms/#occurrenceID,19
53
//location/sourceaccessioncode,institutionCode,,http://rs.tdwg.org/dwc/terms/#institutionCode,11
54
//location/sourceaccessioncode,collectionCode,,http://rs.tdwg.org/dwc/terms/#collectionCode,12
55
//location/sourceaccessioncode,catalogNumber,,http://rs.tdwg.org/dwc/terms/#catalogNumber,20
56
,acceptedNameUsage,,http://rs.tdwg.org/dwc/terms/#acceptedNameUsage,135
57
,acceptedNameUsageID,,http://rs.tdwg.org/dwc/terms/#acceptedNameUsageID,128
58
,associatedMedia,,http://rs.tdwg.org/dwc/terms/#associatedMedia,36
59
,associatedOccurrences,,http://rs.tdwg.org/dwc/terms/#associatedOccurrences,38
60
,associatedReferences,,http://rs.tdwg.org/dwc/terms/#associatedReferences,37
61
,associatedSequences,,http://rs.tdwg.org/dwc/terms/#associatedSequences,39
62
,associatedTaxa,,http://rs.tdwg.org/dwc/terms/#associatedTaxa,40
63
,basisOfRecord,Brad: OMIT? See http://rs.tdwg.org/dwc/terms/index.htm#basisOfRecord for definition of this term.,http://rs.tdwg.org/dwc/terms/#basisOfRecord,15
64
,bed,,http://rs.tdwg.org/dwc/terms/#bed,117
65
,behavior,,http://rs.tdwg.org/dwc/terms/#behavior,29
66
,countryCode,,http://rs.tdwg.org/dwc/terms/#countryCode,64
67
,dataGeneralizations,,http://rs.tdwg.org/dwc/terms/#dataGeneralizations,17
68
,datasetID,,http://rs.tdwg.org/dwc/terms/#datasetID,10
69
,datasetName,,http://rs.tdwg.org/dwc/terms/#datasetName,13
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,day,Brad: OMIT,http://rs.tdwg.org/dwc/terms/#day,50
71
,dcterms:accessRights,,http://rs.tdwg.org/dwc/terms/#dcterms:accessRights,5
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,dcterms:bibliographicCitation,,http://rs.tdwg.org/dwc/terms/#dcterms:bibliographicCitation,6
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,dcterms:language,,http://rs.tdwg.org/dwc/terms/#dcterms:language,2
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,dcterms:modified,"Brad: Mapping to VegX is incorrect. I think is this merely an internal timestamp indicated when record last modified, not necessarily when determination (taxon name) last modified. Probably we should omit this field, although might be useful for updating changed records from this source.",http://rs.tdwg.org/dwc/terms/#dcterms:modified,1
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,dcterms:references,,http://rs.tdwg.org/dwc/terms/#dcterms:references,7
76
,dcterms:rights,,http://rs.tdwg.org/dwc/terms/#dcterms:rights,3
77
,dcterms:rightsHolder,,http://rs.tdwg.org/dwc/terms/#dcterms:rightsHolder,4
78
,dcterms:type,,http://rs.tdwg.org/dwc/terms/#dcterms:type,0
79
,disposition,,http://rs.tdwg.org/dwc/terms/#disposition,33
80
,dynamicProperties,,http://rs.tdwg.org/dwc/terms/#dynamicProperties,18
81
,earliestAgeOrLowestStage,,http://rs.tdwg.org/dwc/terms/#earliestAgeOrLowestStage,109
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,earliestEonOrLowestEonothem,,http://rs.tdwg.org/dwc/terms/#earliestEonOrLowestEonothem,101
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,earliestEpochOrLowestSeries,,http://rs.tdwg.org/dwc/terms/#earliestEpochOrLowestSeries,107
84
,earliestEraOrLowestErathem,,http://rs.tdwg.org/dwc/terms/#earliestEraOrLowestErathem,103
85
,earliestPeriodOrLowestSystem,,http://rs.tdwg.org/dwc/terms/#earliestPeriodOrLowestSystem,105
86
,endDayOfYear,,http://rs.tdwg.org/dwc/terms/#endDayOfYear,47
87
,eventID,,http://rs.tdwg.org/dwc/terms/#eventID,41
88
,eventRemarks,,http://rs.tdwg.org/dwc/terms/#eventRemarks,55
89
,eventTime,Brad: OMIT,http://rs.tdwg.org/dwc/terms/#eventTime,45
90
,footprintSRS,,http://rs.tdwg.org/dwc/terms/#footprintSRS,92
91
,footprintSpatialFit,,http://rs.tdwg.org/dwc/terms/#footprintSpatialFit,93
92
,formation,,http://rs.tdwg.org/dwc/terms/#formation,115
93
,geodeticDatum,,http://rs.tdwg.org/dwc/terms/#geodeticDatum,87
94
,geologicalContextID,,http://rs.tdwg.org/dwc/terms/#geologicalContextID,100
95
,georeferenceProtocol,,http://rs.tdwg.org/dwc/terms/#georeferenceProtocol,96
96
,georeferenceRemarks,,http://rs.tdwg.org/dwc/terms/#georeferenceRemarks,99
97
,georeferenceSources,,http://rs.tdwg.org/dwc/terms/#georeferenceSources,97
98
,georeferenceVerificationStatus,,http://rs.tdwg.org/dwc/terms/#georeferenceVerificationStatus,98
99
,georeferencedBy,,http://rs.tdwg.org/dwc/terms/#georeferencedBy,94
100
,georeferencedDate,,http://rs.tdwg.org/dwc/terms/#georeferencedDate,95
101
,group,,http://rs.tdwg.org/dwc/terms/#group,114
102
,higherClassification,,http://rs.tdwg.org/dwc/terms/#higherClassification,141
103
,higherGeography,,http://rs.tdwg.org/dwc/terms/#higherGeography,58
104
,higherGeographyID,,http://rs.tdwg.org/dwc/terms/#higherGeographyID,57
105
,highestBiostratigraphicZone,,http://rs.tdwg.org/dwc/terms/#highestBiostratigraphicZone,112
106
,identificationID,,http://rs.tdwg.org/dwc/terms/#identificationID,118
107
,identificationQualifier,,http://rs.tdwg.org/dwc/terms/#identificationQualifier,124
108
,identificationReferences,,http://rs.tdwg.org/dwc/terms/#identificationReferences,121
109
,identificationRemarks,,http://rs.tdwg.org/dwc/terms/#identificationRemarks,123
110
,identificationVerificationStatus,,http://rs.tdwg.org/dwc/terms/#identificationVerificationStatus,122
111
,individualCount,,http://rs.tdwg.org/dwc/terms/#individualCount,25
112
,individualID,,http://rs.tdwg.org/dwc/terms/#individualID,24
113
,informationWithheld,,http://rs.tdwg.org/dwc/terms/#informationWithheld,16
114
,institutionID,,http://rs.tdwg.org/dwc/terms/#institutionID,8
115
,island,,http://rs.tdwg.org/dwc/terms/#island,62
116
,islandGroup,,http://rs.tdwg.org/dwc/terms/#islandGroup,61
117
,latestAgeOrHighestStage,,http://rs.tdwg.org/dwc/terms/#latestAgeOrHighestStage,110
118
,latestEonOrHighestEonothem,,http://rs.tdwg.org/dwc/terms/#latestEonOrHighestEonothem,102
119
,latestEpochOrHighestSeries,,http://rs.tdwg.org/dwc/terms/#latestEpochOrHighestSeries,108
120
,latestEraOrHighestErathem,,http://rs.tdwg.org/dwc/terms/#latestEraOrHighestErathem,104
121
,latestPeriodOrHighestSystem,,http://rs.tdwg.org/dwc/terms/#latestPeriodOrHighestSystem,106
122
,lifeStage,,http://rs.tdwg.org/dwc/terms/#lifeStage,27
123
,lithostratigraphicTerms,,http://rs.tdwg.org/dwc/terms/#lithostratigraphicTerms,113
124
,locationAccordingTo,,http://rs.tdwg.org/dwc/terms/#locationAccordingTo,78
125
,locationID,,http://rs.tdwg.org/dwc/terms/#locationID,56
126
,locationRemarks,,http://rs.tdwg.org/dwc/terms/#locationRemarks,79
127
,lowestBiostratigraphicZone,,http://rs.tdwg.org/dwc/terms/#lowestBiostratigraphicZone,111
128
,maximumDistanceAboveSurfaceInMeters,,http://rs.tdwg.org/dwc/terms/#maximumDistanceAboveSurfaceInMeters,77
129
,measurementAccuracy,,http://rs.tdwg.org/dwc/terms/#measurementAccuracy,169
130
,measurementDeterminedBy,,http://rs.tdwg.org/dwc/terms/#measurementDeterminedBy,172
131
,measurementDeterminedDate,,http://rs.tdwg.org/dwc/terms/#measurementDeterminedDate,171
132
,measurementID,,http://rs.tdwg.org/dwc/terms/#measurementID,166
133
,measurementMethod,,http://rs.tdwg.org/dwc/terms/#measurementMethod,173
134
,measurementRemarks,,http://rs.tdwg.org/dwc/terms/#measurementRemarks,174
135
,measurementType,,http://rs.tdwg.org/dwc/terms/#measurementType,167
136
,measurementUnit,,http://rs.tdwg.org/dwc/terms/#measurementUnit,170
137
,measurementValue,,http://rs.tdwg.org/dwc/terms/#measurementValue,168
138
,member,,http://rs.tdwg.org/dwc/terms/#member,116
139
,minimumDistanceAboveSurfaceInMeters,,http://rs.tdwg.org/dwc/terms/#minimumDistanceAboveSurfaceInMeters,76
140
,month,,http://rs.tdwg.org/dwc/terms/#month,49
141
,municipality,,http://rs.tdwg.org/dwc/terms/#municipality,67
142
,nameAccordingTo,,http://rs.tdwg.org/dwc/terms/#nameAccordingTo,138
143
,nameAccordingToID,,http://rs.tdwg.org/dwc/terms/#nameAccordingToID,131
144
,namePublishedIn,,http://rs.tdwg.org/dwc/terms/#namePublishedIn,139
145
,namePublishedInID,,http://rs.tdwg.org/dwc/terms/#namePublishedInID,132
146
,namePublishedInYear,,http://rs.tdwg.org/dwc/terms/#namePublishedInYear,140
147
,nomenclaturalCode,,http://rs.tdwg.org/dwc/terms/#nomenclaturalCode,155
148
,nomenclaturalStatus,,http://rs.tdwg.org/dwc/terms/#nomenclaturalStatus,157
149
,occurrenceRemarks,,http://rs.tdwg.org/dwc/terms/#occurrenceRemarks,21
150
,occurrenceStatus,,http://rs.tdwg.org/dwc/terms/#occurrenceStatus,31
151
,originalNameUsage,,http://rs.tdwg.org/dwc/terms/#originalNameUsage,137
152
,originalNameUsageID,,http://rs.tdwg.org/dwc/terms/#originalNameUsageID,130
153
,otherCatalogNumbers,,http://rs.tdwg.org/dwc/terms/#otherCatalogNumbers,34
154
,ownerInstitutionCode,,http://rs.tdwg.org/dwc/terms/#ownerInstitutionCode,14
155
,parentNameUsage,,http://rs.tdwg.org/dwc/terms/#parentNameUsage,136
156
,parentNameUsageID,,http://rs.tdwg.org/dwc/terms/#parentNameUsageID,129
157
,pointRadiusSpatialFit,,http://rs.tdwg.org/dwc/terms/#pointRadiusSpatialFit,90
158
,preparations,Brad: OMIT,http://rs.tdwg.org/dwc/terms/#preparations,32
159
,previousIdentifications,Brad: OMIT,http://rs.tdwg.org/dwc/terms/#previousIdentifications,35
160
,relatedResourceID,Brad: OMIT,http://rs.tdwg.org/dwc/terms/#relatedResourceID,161
161
,relationshipAccordingTo,,http://rs.tdwg.org/dwc/terms/#relationshipAccordingTo,163
162
,relationshipEstablishedDate,,http://rs.tdwg.org/dwc/terms/#relationshipEstablishedDate,164
163
,relationshipOfResource,Brad: OMIT,http://rs.tdwg.org/dwc/terms/#relationshipOfResource,162
164
,relationshipRemarks,,http://rs.tdwg.org/dwc/terms/#relationshipRemarks,165
165
,reproductiveCondition,,http://rs.tdwg.org/dwc/terms/#reproductiveCondition,28
166
,resourceID,,http://rs.tdwg.org/dwc/terms/#resourceID,160
167
,resourceRelationshipID,,http://rs.tdwg.org/dwc/terms/#resourceRelationshipID,159
168
,samplingEffort,,http://rs.tdwg.org/dwc/terms/#samplingEffort,43
169
,samplingProtocol,,http://rs.tdwg.org/dwc/terms/#samplingProtocol,42
170
,scientificNameID,,http://rs.tdwg.org/dwc/terms/#scientificNameID,127
171
,startDayOfYear,,http://rs.tdwg.org/dwc/terms/#startDayOfYear,46
172
,subgenus,,http://rs.tdwg.org/dwc/terms/#subgenus,148
173
,taxonConceptID,,http://rs.tdwg.org/dwc/terms/#taxonConceptID,133
174
,taxonID,,http://rs.tdwg.org/dwc/terms/#taxonID,126
175
,taxonRank,,http://rs.tdwg.org/dwc/terms/#taxonRank,151
176
,taxonomicStatus,,http://rs.tdwg.org/dwc/terms/#taxonomicStatus,156
177
,typeStatus,Brad: OMIT (?). Indicates whether this specimen served as type for taxon name. Probably not relevant for BIEN,http://rs.tdwg.org/dwc/terms/#typeStatus,125
178
,verbatimCoordinateSystem,,http://rs.tdwg.org/dwc/terms/#verbatimCoordinateSystem,83
179
,verbatimCoordinates,,http://rs.tdwg.org/dwc/terms/#verbatimCoordinates,80
180
,verbatimDepth,,http://rs.tdwg.org/dwc/terms/#verbatimDepth,73
181
,verbatimElevation,,http://rs.tdwg.org/dwc/terms/#verbatimElevation,70
182
,verbatimEventDate,,http://rs.tdwg.org/dwc/terms/#verbatimEventDate,51
183
,verbatimSRS,,http://rs.tdwg.org/dwc/terms/#verbatimSRS,84
184
,verbatimTaxonRank,,http://rs.tdwg.org/dwc/terms/#verbatimTaxonRank,152
185
,vernacularName,,http://rs.tdwg.org/dwc/terms/#vernacularName,154
186
,waterBody,,http://rs.tdwg.org/dwc/terms/#waterBody,60
187
,year,,http://rs.tdwg.org/dwc/terms/#year,48
mappings/Makefile
86 86
	$(bin)/ci_map $< >$@
87 87
dwcMaps += DwC-VegBIEN.specimens.csv
88 88

  
89
for_review/VegBIEN-DwC2.specimens.csv: for_review/DwC2-VegBIEN.specimens.csv
90
	$(bin)/invert <$< >$@
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dwcMaps += for_review/VegBIEN-DwC2.specimens.csv
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# keep comments column(s)
93

  
94 89
dwc_maps: _always $(dwcMaps) ;
95 90

  
96 91
all += $(dwcMaps)

Also available in: Unified diff