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Name Size Revision Age Author Comment
  _archive 1598 almost 13 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 4200 over 12 years Aaron Marcuse-Kubitza backups/: svn:ignore: Also ignore .*, which inc...
  bin 4628 over 12 years Aaron Marcuse-Kubitza join: Added new passthru mode which passes thro...
  config 272 about 13 years Aaron Marcuse-Kubitza Moved bien_password to new config dir
  inputs 4630 over 12 years Aaron Marcuse-Kubitza inputs/SpeciesLink/Specimen/map.csv: Removed no...
  lib 4614 over 12 years Aaron Marcuse-Kubitza lib/mappings.Makefile: missing_mappings: Displa...
  mappings 4622 over 12 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: Removed no longer...
  schemas 4549 over 12 years Aaron Marcuse-Kubitza schemas/py_functions.sql: Added pass-through _d...
  to_do 4524 over 12 years Aaron Marcuse-Kubitza to_do/timeline.doc: Updated to reflect addition...
  validation 4523 over 12 years Aaron Marcuse-Kubitza Added validation/
Makefile 9.91 KB 4613 over 12 years Aaron Marcuse-Kubitza root Makefile: Maps validation: Removed no long...
README.TXT 10.4 KB 4623 over 12 years Aaron Marcuse-Kubitza README.TXT: Data import: `make backups/download...
map 1.22 KB 3475 over 12 years Aaron Marcuse-Kubitza root map: Run bin/map with a nice increment of ...
new_terms.csv 8.9 KB 4615 over 12 years Aaron Marcuse-Kubitza input.Makefile: Maps validation: %/new_terms.cs...
unmapped_terms.csv 2.3 KB 4608 over 12 years Aaron Marcuse-Kubitza Generated global unmapped_terms.csv, new_terms.csv

Latest revisions

# Date Author Comment
4630 09/12/2012 11:02 AM Aaron Marcuse-Kubitza

inputs/SpeciesLink/Specimen/map.csv: Removed no longer needed duplicate entries for each first letter case, which cause duplicate output mappings now that join is case- and punctuation-insensitive. Note that the `svn diff` hides _alt entry 0, which contains one of the removed duplicate columns that appears in the diff.

4629 09/12/2012 10:27 AM Aaron Marcuse-Kubitza

inputs/SpeciesLink/Specimen/src.csv, inputs/XAL/Specimen/src.csv: Added Comments column for consistency with autogenerated src.csv format

4628 09/12/2012 10:14 AM Aaron Marcuse-Kubitza

join: Added new passthru mode which passes through terms with no input mapping or no join mapping

4627 09/12/2012 09:25 AM Aaron Marcuse-Kubitza

inputs/: Added [Veg+] to via map roots to indicate that the datasource and Veg+ vocabularies are combinable. This is possible now that automapped entries are no longer subtracted when this is in the map root, so there is no concern of losing comments on subtracted automapped rows. Note that this change turns on old-style automapping for these datasources, causing SALVIAS plotMetadata to acquire additional mappings.

4626 09/12/2012 08:59 AM Aaron Marcuse-Kubitza

canon, translate, filter_out_ci: Support vocabularies/dictionaries with additional columns in addition to the functional column(s) used by the program. These columns can contain comments, etc. This was not originally supported because Python 2's iterable unpacking only supports "an iterable with the same number of items as there are targets in the target list" (http://docs.python.org/reference/simple_stmts.html#assignment-statements). We now use numeric array indexes instead to get around this limitation, and for consistency with other map-manipulation scripts.

4625 09/12/2012 08:21 AM Aaron Marcuse-Kubitza

Removed no longer used subtract (use filter_out_ci instead)

4624 09/12/2012 08:19 AM Aaron Marcuse-Kubitza

input.Makefile: Maps building: %/.map.csv.last_cleanup: Removed no longer needed subtraction of automapped entries, because information about unmapped and new terms is now available in unmapped_terms.csv and new_terms.csv

4623 09/12/2012 08:13 AM Aaron Marcuse-Kubitza

README.TXT: Data import: `make backups/download`: Removed '&' because running the command in the background prevents rsync from providing a continuously updating progress indication (because a backgrounded process's stdout is not a TTY)

4622 09/12/2012 08:04 AM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: Removed no longer needed /_simplifyPath:[next=parent_id]/path expressions in specific paths because parent_id forwarding is now set globally for all paths in the map root

4621 09/12/2012 07:56 AM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: Added /_simplifyPath:[next=parent_id]/path to root so the returned subplot location will be its parent location if there is no subplot name or ID (indicating that that particular plot did not have subplots). Note that this also causes the parent_id forwarding effect to occur for all other tables containing parent_id, which will help prevent similar issues with subplot events, etc. This will hopefully fix the SALVIAS.plotObservations bug where some organisms did not have a subplot #, causing the subplot location to become NULL and causing the corresponding locationevent rows not to match the locationevent_unique_within_location index filter condition (which requires a parent_id), which caused multiple output table pkeys to be returned for those rows, violating the locationevent_pkeys temp table's primary key.

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