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Revision 4638

inputs/*/*/map.csv: Changed empty mappings to self mappings, using the steps at <https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/Map_refactoring#Change-empty-mappings-to-self-mappings&gt;. Note that in map.full.csv and VegBIEN.csv, lines that have changed are always the result of the input field's case being changed to match the case of the datasource's actual column name.

View differences:

inputs/Madidi/Plot/VegBIEN.csv
43 43
Direction,/location/slopeaspect/_alt/1/_compass/value/_alt/1,Part files provide either this field or Direction
44 44
Orientación/exposicion,/location/slopeaspect/_alt/1/_compass/value/_alt/2,Part files provide either this field or Orientación
45 45
Slope,/location/slopegradient/_alt/1,
46
Collaborators,,"** No join mapping for Collaborators ** Need a way to store a verbatim list of people, or a function to parse it and insert it iteratively into party"
47
Coordinates,,** No join mapping for Coordinates ** Concatenation of Latitude (DMS) and Longitude (DMS)
48
Installed and evaluated by,,"** No join mapping for Installed and evaluated by ** Need a way to store a verbatim list of people, or a function to parse it and insert it iteratively into party"
49
Inventory number,,** No join mapping for Inventory number ** Not globally unique
50
Number of inventory (expedition),,** No join mapping for Number of inventory (expedition) ** The number of the event within the project
51
Number of stems,,** No join mapping for Number of stems ** Do we want to store this data?
52
Number of trees,,** No join mapping for Number of trees ** Do we want to store this data?
53
Related Epilocs,,"** No join mapping for Related Epilocs ** It appears to be a list of people, some with #s after them. It doesn't seem like the definition of Epiloc at <http://rithm.wikispaces.com/Tropicos.Epiloc>, which relates to individual specimens, not whole plots."
54
Soil sample,,** No join mapping for Soil sample ** Always empty
inputs/Madidi/Plot/unmapped_terms.csv
1
""
2
""
3
""
4
""
5
""
6
""
7
""
8
""
1
Inventory number
2
Number of inventory (expedition)
3
Installed and evaluated by
4
Collaborators
5
Related Epilocs
6
Number of stems
7
Number of trees
8
Coordinates
9 9
slopeAspect/_alt/1
10
""
10
Soil sample
11 11
slopeAspect/_alt/2
inputs/UNCC/Specimen/map.full.csv
4 4
collector2,Collector/_merge/3,
5 5
collector3,Collector/_merge/4,
6 6
sheetno,associatedMedia,?
7
country,country
8
county,county
7
country,country,
8
county,county,
9 9
cultivated,cultivated,Ignore other values
10 10
collday,dayCollected,
11
family,family
11
family,family,
12 12
comment1,fieldNotes/_merge/1,
13 13
comment2,fieldNotes/_merge/2,
14 14
comment3,fieldNotes/_merge/3,
......
16 16
campus,"fieldNotes/_merge/5/_label[label=""campus""]/value",
17 17
loanto,"fieldNotes/_merge/6/_label[label=""loaned to""]/value",
18 18
inorout,"fieldNotes/_merge/7/_label[label=""in or out""]/value",
19
genus,genus
20
habitat,habitat
19
filler,filler,"Where used, same as family"
20
genus,genus,
21
habitat,habitat,
21 22
infraname,infraspecificEpithet,
22 23
herbarium,institutionCode,
23
locality,locality
24
locality,locality,
24 25
collmonth,monthCollected,
25 26
accession,occurrenceID,
26 27
collectno,recordNumber,
......
30 31
root,"reproductiveCondition/_map:[A=*,I=*,M=*]/value","Main values are A, I, and M. What do they mean?"
31 32
SciName,scientificName,
32 33
authors,scientificNameAuthorship,
33
species,species
34
state,state
34
species,specificEpithet,
35
state,stateProvince,
35 36
usdaRank,taxonRank/_alt/1,
36 37
infrarank,taxonRank/_alt/2,
37 38
collyear,yearCollected,
inputs/UNCC/Specimen/new_terms.csv
24 24
loanto
25 25
inorout
26 26
sheetno
27
filler
inputs/ACAD/Specimen/map.csv
1 1
ACAD[Veg+],Veg+,Comments
2
id,,
3
basisOfRecord,,
4
identifiedBy,,
5
collectionID,,
6
class,,
7
geodeticDatum,,
8
reproductiveCondition,,
9
decimalLongitude,,
10
institutionCode,,
11
continent,,
12
recordedBy,,
13
county,,
14
order,,
15
georeferenceSources,,
16
language,,
17
georeferenceVerificationStatus,,
18
verbatimElevation,,
19
locationRemarks,,
20
dateIdentified,,
21
verbatimDepth,,
22
municipality,,
23
infraspecificEpithet,,
24
modified,,
25
type,,
26
specificEpithet,,
27
identificationRemarks,,
28
rightsHolder,,
29
recordNumber,,
30
eventDate,,
31
rights,,
32
occurrenceRemarks,,
33
habitat,,
34
family,,
35
stateProvince,,
36
scientificNameAuthorship,,
37
scientificName,,
38
taxonRank,,
39
phylum,,
40
locality,,
41
kingdom,,
42
decimalLatitude,,
43
genus,,
44
ownerInstitutionCode,,
45
collectionCode,,
46
bibliographicCitation,,
47
catalogNumber,,
48
country,,
49
dynamicProperties,,
2
id,occurrenceID,
3
basisOfRecord,basisOfRecord,
4
identifiedBy,identifiedBy,
5
collectionID,collectionID,
6
class,class,
7
geodeticDatum,geodeticDatum,
8
reproductiveCondition,reproductiveCondition,
9
decimalLongitude,decimalLongitude,
10
institutionCode,institutionCode,
11
continent,continent,
12
recordedBy,recordedBy,
13
county,county,
14
order,order,
15
georeferenceSources,georeferenceSources,
16
language,dcterms:language,
17
georeferenceVerificationStatus,georeferenceVerificationStatus,
18
verbatimElevation,verbatimElevation,
19
locationRemarks,locationRemarks,
20
dateIdentified,dateIdentified,
21
verbatimDepth,verbatimDepth,
22
municipality,municipality,
23
infraspecificEpithet,infraspecificEpithet,
24
modified,dcterms:modified,
25
type,dcterms:type,
26
specificEpithet,specificEpithet,
27
identificationRemarks,identificationRemarks,
28
rightsHolder,dcterms:rightsHolder,
29
recordNumber,recordNumber,
30
eventDate,eventDate,
31
rights,dcterms:rights,
32
occurrenceRemarks,occurrenceRemarks,
33
habitat,habitat,
34
family,family,
35
stateProvince,stateProvince,
36
scientificNameAuthorship,scientificNameAuthorship,
37
scientificName,scientificName,
38
taxonRank,taxonRank,
39
phylum,phylum,
40
locality,locality,
41
kingdom,kingdom,
42
decimalLatitude,decimalLatitude,
43
genus,genus,
44
ownerInstitutionCode,ownerInstitutionCode,
45
collectionCode,collectionCode,
46
bibliographicCitation,dcterms:bibliographicCitation,
47
catalogNumber,catalogNumber,
48
country,country,
49
dynamicProperties,dynamicProperties,
inputs/SALVIAS-CSV/Organism/map.csv
13 13
-----"
14 14
subplot,subplot,
15 15
individual_code,recordNumber,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."
16
ind_id,,Brad: OMIT
16
ind_id,ind_id,Brad: OMIT
17 17
tag1,tag/_alt/1,"Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
18 18
tag2,previousTag/_alt/1,"Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
19 19
x_position,organismX,"Brad: These are important, fundamental values of many tree plots"
20 20
y_position,organismY,Brad: See comment above for x_position
21 21
voucher_string,catalogNumber/_alt/2,"Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."
22 22
coll_number,catalogNumber/_alt/1,Brad: Map instead as for voucher_string
23
collector_code,,Brad: OMIT
23
collector_code,collector_code,Brad: OMIT
24 24
coll_lastname,recordedBy.surName,"Brad: This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick."
25 25
coll_firstname,recordedBy.givenName,Brad: See comment above
26 26
det_type,voucherType,"Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider  asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."
27
fam_status,,Brad: OMIT. This will be determined later by using TNRS.
28
gen_status,,Brad: OMIT. This will be determined later by using TNRS.
29
species_status,,"Brad: OMIT. Except, note that if species_status=3, this indicate that name is a morphospecies and not a standard latin name. Not exactly sure how to use this in BIEN, but could be useful during the name-scrubbing process with TNRS."
27
fam_status,fam_status,Brad: OMIT. This will be determined later by using TNRS.
28
gen_status,gen_status,Brad: OMIT. This will be determined later by using TNRS.
29
species_status,species_status,"Brad: OMIT. Except, note that if species_status=3, this indicate that name is a morphospecies and not a standard latin name. Not exactly sure how to use this in BIEN, but could be useful during the name-scrubbing process with TNRS."
30 30
family,family,
31 31
genus,genus,
32 32
specific_epithet,specificEpithet,
......
34 34
infra_rank_1,taxonRank,
35 35
infra_ep_1,infraspecificEpithet,
36 36
cf_aff,identificationQualifier,"Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
37
comments,,Brad: OMIT
37
comments,comments,Brad: OMIT
38 38
habit,verbatimGrowthForm,"Brad: This is growth form (tree, shrub, herb, etc.). It is an observation of a trait."
39 39
no_of_individuals,individualCount,"Brad: This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this."
40 40
cover_percent,coverPercent,
inputs/SALVIAS-CSV/Organism/new_terms.csv
10 10
y_position
11 11
voucher_string
12 12
coll_number
13
collector_code
14 13
coll_lastname
15 14
coll_firstname
16 15
det_type
17
fam_status
18
gen_status
19
species_status
20 16
specific_authority
21 17
infra_rank_1
22 18
infra_ep_1
23 19
cf_aff
24
comments
25 20
no_of_individuals
26 21
intercept_cm
27 22
height_m
inputs/SALVIAS-CSV/Plot/map.full.csv
20 20
elev_max_m,maximumElevationInMeters,
21 21
elev_min_m,minimumElevationInMeters,
22 22
soil_N,"nitrogen/_units:[default=""%"",to=]/value",
23
observation_type,observation_type,"Brad: SALVIAS internal metadata indicating whether the record represents an individual or aggregate observation. Rather than storing, use to decide where to store in VegX.; Aaron: VegX aggregateOrganismObservation table is missing many fields available in individualOrganismObservation, so we're mapping to individualOrganismObservation regardless of observation type"
23 24
organic_percent,"organic/_units:[default=""%"",to=]/value",
24 25
pH,ph,"Brad: For all these soil variables, how do we store information on method, units. Seems like an ontological structure would be more appropriate (measurementName, measurementValue, measurementUnits, measurementMethod). Same as BIEN traits table. Something to discuss."
25 26
soil_P,"phosphorus/_units:[default=""%"",to=]/value/_map:[""<1,5""=0,*=*]/value",
......
28 29
soil_K,"potassium/_units:[default=""%"",to=]/value",
29 30
precip_mm,precipitation,
30 31
project,projectName,
32
recensused,recensused,"Brad: This is a 0/1 value, internal to SALVIAS. 1 indicates that a  plot has >1 set of values, from different census events.; Aaron: Different censuses are distinguished in organisms data by different census_no values"
31 33
plot_methodology,samplingProtocol,
32 34
sand_percent,"sand/_units:[default=""%"",to=]/value",
33 35
silt_percent,"silt/_units:[default=""%"",to=]/value",
inputs/SALVIAS-CSV/Plot/unmapped_terms.csv
11 11
"sodium/_units:[default=""%"",to=]/value"
12 12
"acidity/_units:[default=""%"",to=]/value/_map:[""<0.05""=0,*=*]/value"
13 13
"baseSaturation/_units:[default=""%"",to=]/value"
14
""
15
""
14
observation_type
15
recensused
inputs/ACAD/Specimen/map.full.csv
1 1
ACAD[Veg+],Veg+,Comments
2
catalogNumber,catalogNumber
3
class,class
4
collectionCode,collectionCode
5
collectionID,collectionID
6
continent,continent
7
country,country
8
county,county
9
dateIdentified,dateIdentified
10
decimalLatitude,decimalLatitude
11
decimalLongitude,decimalLongitude
12
eventDate,eventDate
13
family,family
14
genus,genus
15
habitat,habitat
16
id,id
17
identifiedBy,identifiedBy
18
infraspecificEpithet,infraspecificEpithet
19
institutionCode,institutionCode
20
kingdom,kingdom
21
locality,locality
22
order,order
23
phylum,phylum
24
recordNumber,recordNumber
25
recordedBy,recordedBy
26
scientificName,scientificName
27
scientificNameAuthorship,scientificNameAuthorship
28
specificEpithet,specificEpithet
29
stateProvince,stateProvince
30
taxonRank,taxonRank
31
verbatimElevation,verbatimElevation
2
basisOfRecord,basisOfRecord,
3
catalogNumber,catalogNumber,
4
class,class,
5
collectionCode,collectionCode,
6
collectionID,collectionID,
7
continent,continent,
8
country,country,
9
county,county,
10
dateIdentified,dateIdentified,
11
bibliographicCitation,dcterms:bibliographicCitation,
12
language,dcterms:language,
13
modified,dcterms:modified,
14
rights,dcterms:rights,
15
rightsHolder,dcterms:rightsHolder,
16
type,dcterms:type,
17
decimalLatitude,decimalLatitude,
18
decimalLongitude,decimalLongitude,
19
dynamicProperties,dynamicProperties,
20
eventDate,eventDate,
21
family,family,
22
genus,genus,
23
geodeticDatum,geodeticDatum,
24
georeferenceSources,georeferenceSources,
25
georeferenceVerificationStatus,georeferenceVerificationStatus,
26
habitat,habitat,
27
identificationRemarks,identificationRemarks,
28
identifiedBy,identifiedBy,
29
infraspecificEpithet,infraspecificEpithet,
30
institutionCode,institutionCode,
31
kingdom,kingdom,
32
locality,locality,
33
locationRemarks,locationRemarks,
34
municipality,municipality,
35
id,occurrenceID,
36
occurrenceRemarks,occurrenceRemarks,
37
order,order,
38
ownerInstitutionCode,ownerInstitutionCode,
39
phylum,phylum,
40
recordNumber,recordNumber,
41
recordedBy,recordedBy,
42
reproductiveCondition,reproductiveCondition,
43
scientificName,scientificName,
44
scientificNameAuthorship,scientificNameAuthorship,
45
specificEpithet,specificEpithet,
46
stateProvince,stateProvince,
47
taxonRank,taxonRank,
48
verbatimDepth,verbatimDepth,
49
verbatimElevation,verbatimElevation,
inputs/SALVIAS-CSV/Organism/map.full.csv
5 5
coll_number,catalogNumber/_alt/1,Brad: Map instead as for voucher_string
6 6
voucher_string,catalogNumber/_alt/2,"Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."
7 7
census_no,censusNumber,"Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not."
8
collector_code,collector_code,Brad: OMIT
9
comments,comments,Brad: OMIT
8 10
cover_percent,coverPercent,
9 11
stem_dbh,diameterBreastHeight,
10 12
census_date,eventDate,"This is for the subplot, not the organism, as all organisms in a subplot have the same value for it. The following query returns no rows:
......
15 17
GROUP BY ""PLOT_ID"", subplot
16 18
HAVING count(DISTINCT census_date) > 1
17 19
-----"
20
fam_status,fam_status,Brad: OMIT. This will be determined later by using TNRS.
18 21
family,family,
22
gen_status,gen_status,Brad: OMIT. This will be determined later by using TNRS.
19 23
genus,genus,
20 24
stem_height_m,height/_alt/1,"Brad: Same as for height, but applies to individuals stems, not trees. Rare."
21 25
height_m,height/_alt/2,
22 26
ht_first_branch_m,heightFirstBranch,
23 27
stem_height_first_branch_m,heightFirstBranch,"Brad: Same as for ht_first_branch_m, but applies to individuals stems, not trees. Rare."
24 28
cf_aff,identificationQualifier,"Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
29
ind_id,ind_id,Brad: OMIT
25 30
no_of_individuals,individualCount,"Brad: This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this."
26 31
OBSERVATION_ID,individualID,"Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later."
27 32
infra_ep_1,infraspecificEpithet,
......
36 41
coll_firstname,recordedBy.givenName,Brad: See comment above
37 42
coll_lastname,recordedBy.surName,"Brad: This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick."
38 43
specific_authority,scientificNameAuthorship,Brad: This is the author of the scientificName.
44
species_status,species_status,"Brad: OMIT. Except, note that if species_status=3, this indicate that name is a morphospecies and not a standard latin name. Not exactly sure how to use this in BIEN, but could be useful during the name-scrubbing process with TNRS."
39 45
specific_epithet,specificEpithet,
40 46
notes,stemNotes,
41 47
subplot,subplot,
inputs/SALVIAS-CSV/Organism/unmapped_terms.csv
1
""
1
ind_id
2 2
tag/_alt/1
3 3
previousTag/_alt/1
4 4
catalogNumber/_alt/2
5 5
catalogNumber/_alt/1
6
""
7
""
8
""
9
""
10
""
6
collector_code
7
fam_status
8
gen_status
9
species_status
10
comments
11 11
height/_alt/2
12 12
tag/_alt/2
13 13
previousTag/_alt/2
inputs/SALVIAS-CSV/Plot/VegBIEN.csv
47 47
locality_description,/location/locationnarrative/_merge/1,"Brad: No; this is free text description of locality where plot was situated, same as for DwC. Not a description of vegetation. Most likely='namedPlace.placeDescription' in VB; not sure about VX, again need to ask Nick where locality descriptions live in VX"
48 48
slope_aspect,/location/slopeaspect/_alt/1/_compass/value,
49 49
slope_gradient,/location/slopegradient/_alt/1,
50
observation_type,,"** No join mapping for observation_type ** Brad: SALVIAS internal metadata indicating whether the record represents an individual or aggregate observation. Rather than storing, use to decide where to store in VegX.; Aaron: VegX aggregateOrganismObservation table is missing many fields available in individualOrganismObservation, so we're mapping to individualOrganismObservation regardless of observation type"
51
recensused,,"** No join mapping for recensused ** Brad: This is a 0/1 value, internal to SALVIAS. 1 indicates that a  plot has >1 set of values, from different census events.; Aaron: Different censuses are distinguished in organisms data by different census_no values"
inputs/CVS/Organism/map.csv
6 6
locationAccuracy-m,coordinateUncertaintyInMeters,
7 7
publicLatitude,decimalLatitude,
8 8
publicLongitude,decimalLongitude,
9
confidentialityStatus,,
9
confidentialityStatus,confidentialityStatus,
10 10
state,stateProvince,
11 11
county,county,
12 12
currentTaxonName sec Weakley 2006,scientificName,
inputs/CVS/Organism/unmapped_terms.csv
1 1
OMIT
2 2
OMIT
3
""
3
confidentialityStatus
inputs/CVS/Organism/new_terms.csv
4 4
locationAccuracy-m
5 5
publicLatitude
6 6
publicLongitude
7
confidentialityStatus
8 7
currentTaxonName sec Weakley 2006
9 8
%cover
inputs/MT/Specimen/map.csv
1 1
MT[Veg+],Veg+,Comments
2
id,,
3
establishmentMeans,,
4
locality,,
5
language,,
6
collectionID,,
7
occurrenceRemarks,,
8
type,,
9
institutionCode,,
10
rights,,
11
family,,
12
continent,,
13
collectionCode,,
14
datasetName,,
15
rightsHolder,,
16
genus,,
17
basisOfRecord,,
18
individualCount,,
19
countryCode,,
2
id,occurrenceID,
3
establishmentMeans,establishmentMeans,
4
locality,locality,
5
language,dcterms:language,
6
collectionID,collectionID,
7
occurrenceRemarks,occurrenceRemarks,
8
type,dcterms:type,
9
institutionCode,institutionCode,
10
rights,dcterms:rights,
11
family,family,
12
continent,continent,
13
collectionCode,collectionCode,
14
datasetName,datasetName,
15
rightsHolder,dcterms:rightsHolder,
16
genus,genus,
17
basisOfRecord,basisOfRecord,
18
individualCount,individualCount,
19
countryCode,countryCode,
inputs/MT/Specimen/map.full.csv
1 1
MT[Veg+],Veg+,Comments
2
collectionCode,collectionCode
3
collectionID,collectionID
4
continent,continent
5
establishmentMeans,establishmentMeans
6
family,family
7
genus,genus
8
id,id
9
individualCount,individualCount
10
institutionCode,institutionCode
11
locality,locality
2
basisOfRecord,basisOfRecord,
3
collectionCode,collectionCode,
4
collectionID,collectionID,
5
continent,continent,
6
countryCode,countryCode,
7
datasetName,datasetName,
8
language,dcterms:language,
9
rights,dcterms:rights,
10
rightsHolder,dcterms:rightsHolder,
11
type,dcterms:type,
12
establishmentMeans,establishmentMeans,
13
family,family,
14
genus,genus,
15
individualCount,individualCount,
16
institutionCode,institutionCode,
17
locality,locality,
18
id,occurrenceID,
19
occurrenceRemarks,occurrenceRemarks,
inputs/MT/Specimen/VegBIEN.csv
14 14
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
15 15
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
16 16
locality,/location/locationnarrative/_merge/1,
17
basisOfRecord,,** No join mapping for basisOfRecord ** 
18
countryCode,,** No join mapping for countryCode ** 
19
datasetName,,** No join mapping for datasetName ** 
20
language,,** No join mapping for dcterms:language ** 
21
occurrenceRemarks,,** No join mapping for occurrenceRemarks ** 
22
rights,,** No join mapping for dcterms:rights ** 
23
rightsHolder,,** No join mapping for dcterms:rightsHolder ** 
24
type,,** No join mapping for dcterms:type ** 
inputs/TEAM/VL/map.csv
1 1
TEAM[Veg+],Veg+,Comments
2
ID,,
2
ID,occurrenceID,
3 3
SiteName,projectName,
4 4
1haPlotCode,plotName,
5 5
ObservationDate,eventDate,
6
Family,,
7
Genus,,
8
SpecificEpithet,,
6
Family,family,
7
Genus,genus,
8
SpecificEpithet,specificEpithet,
9 9
Collectors,recordedBy,
10
dbh,,
11
max_diam,,
12
max_diam_pom,,
13
ConditionCodes,,
14
LocationCodes,,
15
SamplingPeriod,,
16
Comments,,
17
SamplingUnitName,,
18
Latitude,,
19
Longitude,,
10
dbh,diameterBreastHeight,
11
max_diam,max_diam,
12
max_diam_pom,max_diam_pom,
13
ConditionCodes,ConditionCodes,
14
LocationCodes,LocationCodes,
15
SamplingPeriod,SamplingPeriod,
16
Comments,Comments,
17
SamplingUnitName,SamplingUnitName,
18
Latitude,verbatimLatitude,
19
Longitude,verbatimLongitude,
20 20
Method,samplingProtocol,
21
Subplot,,
21
Subplot,subplot,
22 22
X_1haPlot,organismX,
23 23
Y_1haPlot,organismY,
24 24
TreeNumber,tag,
25
ProtocolVersion,,
26
ResponsibleInstitution,,
27
ProtocolLeadScientist,,
28
ProtocolLeadScientistInstitution,,
25
ProtocolVersion,ProtocolVersion,
26
ResponsibleInstitution,ResponsibleInstitution,
27
ProtocolLeadScientist,ProtocolLeadScientist,
28
ProtocolLeadScientistInstitution,ProtocolLeadScientistInstitution,
inputs/TEAM/VL/map.full.csv
1 1
TEAM[Veg+],Veg+,Comments
2
DBH,DBH
2
Comments,Comments,
3
ConditionCodes,ConditionCodes,
4
LocationCodes,LocationCodes,
5
ProtocolLeadScientist,ProtocolLeadScientist,
6
ProtocolLeadScientistInstitution,ProtocolLeadScientistInstitution,
7
ProtocolVersion,ProtocolVersion,
8
ResponsibleInstitution,ResponsibleInstitution,
9
SamplingPeriod,SamplingPeriod,
10
SamplingUnitName,SamplingUnitName,
11
dbh,diameterBreastHeight,
3 12
ObservationDate,eventDate,
4
family,family
5
genus,genus
6
id,id
7
latitude,latitude
8
longitude,longitude
13
Family,family,
14
Genus,genus,
15
max_diam,max_diam,
16
max_diam_pom,max_diam_pom,
17
ID,occurrenceID,
9 18
X_1haPlot,organismX,
10 19
Y_1haPlot,organismY,
11 20
1haPlotCode,plotName,
12 21
SiteName,projectName,
13 22
Collectors,recordedBy,
14 23
Method,samplingProtocol,
15
specificEpithet,specificEpithet
16
subplot,subplot
24
SpecificEpithet,specificEpithet,
25
Subplot,subplot,
17 26
TreeNumber,tag,
27
Latitude,verbatimLatitude,
28
Longitude,verbatimLongitude,
inputs/TEAM/VL/VegBIEN.csv
1 1
TEAM[Veg+],VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
2
subplot,"/location/_if[@name=""if subplot""]/cond/_exists/_first/2",
2
Subplot,"/location/_if[@name=""if subplot""]/cond/_exists/_first/2",
3 3
1haPlotCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/1",
4
id,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1",
4
ID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1",
5 5
1haPlotCode,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode",
6
subplot,/location/authorlocationcode,
7
latitude,"/location/locationdetermination/latitude/_alt/2/_nullIf:[null=0,type=float]/value",
8
longitude,"/location/locationdetermination/longitude/_alt/2/_nullIf:[null=0,type=float]/value",
6
Subplot,/location/authorlocationcode,
7
Latitude,"/location/locationdetermination/latitude/_alt/2/_nullIf:[null=0,type=float]/value",
8
Longitude,"/location/locationdetermination/longitude/_alt/2/_nullIf:[null=0,type=float]/value",
9 9
Method,/location/locationevent/*_id/method/name,
10 10
SiteName,/location/locationevent/*_id/project/projectname,
11
subplot,"/location/locationevent/_if[@name=""if subplot""]/cond/_exists/_first/2",
11
Subplot,"/location/locationevent/_if[@name=""if subplot""]/cond/_exists/_first/2",
12 12
1haPlotCode,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/then/parent_id/locationevent/*_id/location/authorlocationcode",
13 13
ObservationDate,/location/locationevent/obsenddate/_*/date/_alt/2/_dateRangeEnd/value,
14 14
ObservationDate,/location/locationevent/obsstartdate/_*/date/_alt/2/_dateRangeStart/value,
15
id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode,
16
DBH,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/diameterbreastheight,
15
ID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode,
16
dbh,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/diameterbreastheight,
17 17
TreeNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/stemtag[""""/iscurrent/_alt/2=true]/tag",Quotes sort it before tag2
18 18
X_1haPlot,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/xposition,
19 19
Y_1haPlot,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/yposition,
20
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
21
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
22
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
20
SpecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
21
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
22
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
23 23
Collectors,/location/locationevent/taxonoccurrence/verbatimcollectorname,
24
Comments,,** No join mapping for Comments ** 
25
ConditionCodes,,** No join mapping for ConditionCodes ** 
26
LocationCodes,,** No join mapping for LocationCodes ** 
27
ProtocolLeadScientist,,** No join mapping for ProtocolLeadScientist ** 
28
ProtocolLeadScientistInstitution,,** No join mapping for ProtocolLeadScientistInstitution ** 
29
ProtocolVersion,,** No join mapping for ProtocolVersion ** 
30
ResponsibleInstitution,,** No join mapping for ResponsibleInstitution ** 
31
SamplingPeriod,,** No join mapping for SamplingPeriod ** 
32
SamplingUnitName,,** No join mapping for SamplingUnitName ** 
33
max_diam,,** No join mapping for max_diam ** 
34
max_diam_pom,,** No join mapping for max_diam_pom ** 
inputs/TEAM/VL/new_terms.csv
3 3
ObservationDate
4 4
Collectors
5 5
max_diam
6
max_diam_pom
7
ConditionCodes
8
LocationCodes
9
SamplingPeriod
10
Comments
11
SamplingUnitName
12 6
Method
13 7
X_1haPlot
14 8
Y_1haPlot
15 9
TreeNumber
16
ProtocolVersion
17
ResponsibleInstitution
18
ProtocolLeadScientist
19
ProtocolLeadScientistInstitution
inputs/TEAM/VL/unmapped_terms.csv
1
""
2
""
3
""
4
""
5
""
6
""
7
""
8
""
9
""
10
""
11
""
12
""
13
""
14
""
15
""
16
""
17
""
18
""
19
""
1
max_diam
2
max_diam_pom
3
ConditionCodes
4
LocationCodes
5
SamplingPeriod
6
Comments
7
SamplingUnitName
8
ProtocolVersion
9
ResponsibleInstitution
10
ProtocolLeadScientist
11
ProtocolLeadScientistInstitution
inputs/TEAM/VT/map.csv
1 1
TEAM[Veg+],Veg+,Comments
2 2
ID,occurrenceID,
3 3
ObservationDate,eventDate,
4
Family,,
5
Genus,,
6
SpecificEpithet,,
4
Family,family,
5
Genus,genus,
6
SpecificEpithet,specificEpithet,
7 7
Collectors,recordedBy,
8 8
dbh,diameterBreastHeight,
9
dbh_pom,,
10
dbh_new,,
11
dbh_new_pom,,
12
ConditionCodes,,
13
SamplingPeriod,,
14
Comments,,
15
SamplingUnitName,,
16
Latitude,,
17
Longitude,,
9
dbh_pom,dbh_pom,
10
dbh_new,dbh_new,
11
dbh_new_pom,dbh_new_pom,
12
ConditionCodes,ConditionCodes,
13
SamplingPeriod,SamplingPeriod,
14
Comments,Comments,
15
SamplingUnitName,SamplingUnitName,
16
Latitude,verbatimLatitude,
17
Longitude,verbatimLongitude,
18 18
Method,samplingProtocol,
19
Subplot,,
19
Subplot,subplot,
20 20
X_1haPlot,organismX,
21 21
Y_1haPlot,organismY,
22 22
TreeNumber,tag,
23 23
SiteName,projectName,
24 24
1haPlotCode,plotName,
25
ProtocolVersion,,
26
ResponsibleInstitution,,
27
ProtocolLeadScientist,,
28
ProtocolLeadScientistInstitution,,
25
ProtocolVersion,ProtocolVersion,
26
ResponsibleInstitution,ResponsibleInstitution,
27
ProtocolLeadScientist,ProtocolLeadScientist,
28
ProtocolLeadScientistInstitution,ProtocolLeadScientistInstitution,
inputs/TEAM/VT/map.full.csv
1 1
TEAM[Veg+],Veg+,Comments
2
Comments,Comments,
3
ConditionCodes,ConditionCodes,
4
ProtocolLeadScientist,ProtocolLeadScientist,
5
ProtocolLeadScientistInstitution,ProtocolLeadScientistInstitution,
6
ProtocolVersion,ProtocolVersion,
7
ResponsibleInstitution,ResponsibleInstitution,
8
SamplingPeriod,SamplingPeriod,
9
SamplingUnitName,SamplingUnitName,
10
dbh_new,dbh_new,
11
dbh_new_pom,dbh_new_pom,
12
dbh_pom,dbh_pom,
2 13
dbh,diameterBreastHeight,
3 14
ObservationDate,eventDate,
4
family,family
5
genus,genus
6
latitude,latitude
7
longitude,longitude
15
Family,family,
16
Genus,genus,
8 17
ID,occurrenceID,
9 18
X_1haPlot,organismX,
10 19
Y_1haPlot,organismY,
......
12 21
SiteName,projectName,
13 22
Collectors,recordedBy,
14 23
Method,samplingProtocol,
15
specificEpithet,specificEpithet
16
subplot,subplot
24
SpecificEpithet,specificEpithet,
25
Subplot,subplot,
17 26
TreeNumber,tag,
27
Latitude,verbatimLatitude,
28
Longitude,verbatimLongitude,
inputs/TEAM/VT/VegBIEN.csv
1 1
TEAM[Veg+],VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
2
subplot,"/location/_if[@name=""if subplot""]/cond/_exists/_first/2",
2
Subplot,"/location/_if[@name=""if subplot""]/cond/_exists/_first/2",
3 3
1haPlotCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/1",
4 4
ID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1",
5 5
1haPlotCode,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode",
6
subplot,/location/authorlocationcode,
7
latitude,"/location/locationdetermination/latitude/_alt/2/_nullIf:[null=0,type=float]/value",
8
longitude,"/location/locationdetermination/longitude/_alt/2/_nullIf:[null=0,type=float]/value",
6
Subplot,/location/authorlocationcode,
7
Latitude,"/location/locationdetermination/latitude/_alt/2/_nullIf:[null=0,type=float]/value",
8
Longitude,"/location/locationdetermination/longitude/_alt/2/_nullIf:[null=0,type=float]/value",
9 9
Method,/location/locationevent/*_id/method/name,
10 10
SiteName,/location/locationevent/*_id/project/projectname,
11
subplot,"/location/locationevent/_if[@name=""if subplot""]/cond/_exists/_first/2",
11
Subplot,"/location/locationevent/_if[@name=""if subplot""]/cond/_exists/_first/2",
12 12
1haPlotCode,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/then/parent_id/locationevent/*_id/location/authorlocationcode",
13 13
ObservationDate,/location/locationevent/obsenddate/_*/date/_alt/2/_dateRangeEnd/value,
14 14
ObservationDate,/location/locationevent/obsstartdate/_*/date/_alt/2/_dateRangeStart/value,
......
17 17
TreeNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/stemtag[""""/iscurrent/_alt/2=true]/tag",Quotes sort it before tag2
18 18
X_1haPlot,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/xposition,
19 19
Y_1haPlot,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/yposition,
20
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
21
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
22
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
20
SpecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
21
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
22
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
23 23
Collectors,/location/locationevent/taxonoccurrence/verbatimcollectorname,
24
Comments,,** No join mapping for Comments ** 
25
ConditionCodes,,** No join mapping for ConditionCodes ** 
26
ProtocolLeadScientist,,** No join mapping for ProtocolLeadScientist ** 
27
ProtocolLeadScientistInstitution,,** No join mapping for ProtocolLeadScientistInstitution ** 
28
ProtocolVersion,,** No join mapping for ProtocolVersion ** 
29
ResponsibleInstitution,,** No join mapping for ResponsibleInstitution ** 
30
SamplingPeriod,,** No join mapping for SamplingPeriod ** 
31
SamplingUnitName,,** No join mapping for SamplingUnitName ** 
32
dbh_new,,** No join mapping for dbh_new ** 
33
dbh_new_pom,,** No join mapping for dbh_new_pom ** 
34
dbh_pom,,** No join mapping for dbh_pom ** 
inputs/TEAM/VT/new_terms.csv
1 1
ObservationDate
2 2
Collectors
3 3
dbh_pom
4
dbh_new
5
dbh_new_pom
6
ConditionCodes
7
SamplingPeriod
8
Comments
9
SamplingUnitName
10 4
Method
11 5
X_1haPlot
12 6
Y_1haPlot
13 7
TreeNumber
14 8
SiteName
15 9
1haPlotCode
16
ProtocolVersion
17
ResponsibleInstitution
18
ProtocolLeadScientist
19
ProtocolLeadScientistInstitution
inputs/TEAM/VT/unmapped_terms.csv
1
""
2
""
3
""
4
""
5
""
6
""
7
""
8
""
9
""
10
""
11
""
12
""
13
""
14
""
15
""
16
""
17
""
1
dbh_pom
2
dbh_new
3
dbh_new_pom
4
ConditionCodes
5
SamplingPeriod
6
Comments
7
SamplingUnitName
8
ProtocolVersion
9
ResponsibleInstitution
10
ProtocolLeadScientist
11
ProtocolLeadScientistInstitution
inputs/NY/Specimen/map.csv
1 1
NY[Veg+],Veg+,Comments
2
key,,Not used because UniqueNYInternalRecordNumber is a better pkey
3
DateLastModified,,
4
InstitutionCode,,
5
CollectionCode,,
6
CatalogNumber,,
7
ScientificName,,
8
BasisOfRecord,,
9
Kingdom,,
10
Phylum,,
11
Class,,
12
Order,,
13
Family,,
14
Genus,,
15
Species,,
16
Subspecies,,
17
ScientificNameAuthor,,
18
IdentifiedBy,,
19
YearIdentified,,
20
MonthIdentified,,
21
DayIdentified,,
22
TypeStatus,,
2
key,key,Not used because UniqueNYInternalRecordNumber is a better pkey
3
DateLastModified,dcterms:modified,
4
InstitutionCode,institutionCode,
5
CollectionCode,collectionCode,
6
CatalogNumber,catalogNumber,
7
ScientificName,scientificName,
8
BasisOfRecord,BasisOfRecord,
9
Kingdom,kingdom,
10
Phylum,phylum,
11
Class,class,
12
Order,order,
13
Family,family,
14
Genus,genus,
15
Species,specificEpithet,
16
Subspecies,infraspecificEpithet,
17
ScientificNameAuthor,scientificNameAuthorship,
18
IdentifiedBy,identifiedBy,
19
YearIdentified,yearIdentified,
20
MonthIdentified,monthIdentified,
21
DayIdentified,dayIdentified,
22
TypeStatus,TypeStatus,
23 23
CollectorNumber,OMIT,"Not used [1], so does not need to be mapped.
24 24

  
25 25
[1] The following query returns no rows: SELECT * FROM ""NY"".""Specimen"" WHERE ""CollectorNumber"" IS NOT NULL"
26 26
FieldNumber,recordNumber,Usage inconsistent with DwC definition
27
Collector,,
28
YearCollected,,
29
MonthCollected,,
30
DayCollected,,
31
JulianDay,,
32
TimeOfDay,,
33
ContinentOcean,,
34
Country,,
35
StateProvince,,
36
County,,
27
Collector,recordedBy,
28
YearCollected,yearCollected,
29
MonthCollected,monthCollected,
30
DayCollected,dayCollected,
31
JulianDay,day,
32
TimeOfDay,eventTime,
33
ContinentOcean,continent,
34
Country,country,
35
StateProvince,stateProvince,
36
County,county,
37 37
Locality,Locality/_merge/1,
38
Longitude,,
39
Latitude,,
40
CoordinatePrecision,,
41
BoundingBox,,
38
Longitude,verbatimLongitude,
39
Latitude,verbatimLatitude,
40
CoordinatePrecision,coordinatePrecision,
41
BoundingBox,footprintWKT,
42 42
MinimumElevation,MinimumElevation/_nullIf:[null=.]/value,
43
MaximumElevation,,
44
MinimumDepth,,
45
MaximumDepth,,
46
Sex,,
47
PreparationType,,
48
IndividualCount,,
49
PreviousCatalogNumber,,
50
RelationshipType,,
51
RelatedCatalogItem,,
43
MaximumElevation,maximumElevationInMeters,
44
MinimumDepth,minimumDepthInMeters,
45
MaximumDepth,maximumDepthInMeters,
46
Sex,sex,
47
PreparationType,preparations,
48
IndividualCount,individualCount,
49
PreviousCatalogNumber,otherCatalogNumbers,
50
RelationshipType,relationshipOfResource,
51
RelatedCatalogItem,relatedResourceID,
52 52
Notes,Notes/_merge/1,
53
Habitat,,
53
Habitat,habitat,
54 54
PlantFungusDescription,"Notes/_merge/2/_label[label=""plant fungus""]/value",
55 55
Substrate,"Locality/_merge/2/_label[label=""substrate""]/value",
56 56
Vegetation,"Locality/_merge/3/_label[label=""vegetation""]/value",
inputs/NY/Specimen/map.full.csv
1 1
NY[Veg+],Veg+,Comments
2
BasisOfRecord,BasisOfRecord,
2 3
Locality,Locality/_merge/1,
3 4
Substrate,"Locality/_merge/2/_label[label=""substrate""]/value",
4 5
Vegetation,"Locality/_merge/3/_label[label=""vegetation""]/value",
......
8 9
CollectorNumber,OMIT,"Not used [1], so does not need to be mapped.
9 10

  
10 11
[1] The following query returns no rows: SELECT * FROM ""NY"".""Specimen"" WHERE ""CollectorNumber"" IS NOT NULL"
11
boundingBox,boundingBox
12
catalogNumber,catalogNumber
13
class,class
14
collectionCode,collectionCode
15
collector,collector
16
continentOcean,continentOcean
17
coordinatePrecision,coordinatePrecision
18
country,country
19
county,county
20
dayCollected,dayCollected
21
dayIdentified,dayIdentified
22
family,family
23
genus,genus
24
habitat,habitat
25
identifiedBy,identifiedBy
26
individualCount,individualCount
27
institutionCode,institutionCode
28
kingdom,kingdom
29
latitude,latitude
30
longitude,longitude
31
maximumDepth,maximumDepth
32
maximumElevation,maximumElevation
33
minimumDepth,minimumDepth
34
monthCollected,monthCollected
35
monthIdentified,monthIdentified
12
TypeStatus,TypeStatus,
13
CatalogNumber,catalogNumber,
14
Class,class,
15
CollectionCode,collectionCode,
16
ContinentOcean,continent,
17
CoordinatePrecision,coordinatePrecision,
18
Country,country,
19
County,county,
20
JulianDay,day,
21
DayCollected,dayCollected,
22
DayIdentified,dayIdentified,
23
DateLastModified,dcterms:modified,
24
TimeOfDay,eventTime,
25
Family,family,
26
BoundingBox,footprintWKT,
27
Genus,genus,
28
Habitat,habitat,
29
IdentifiedBy,identifiedBy,
30
IndividualCount,individualCount,
31
Subspecies,infraspecificEpithet,
32
InstitutionCode,institutionCode,
33
key,key,Not used because UniqueNYInternalRecordNumber is a better pkey
34
Kingdom,kingdom,
35
MaximumDepth,maximumDepthInMeters,
36
MaximumElevation,maximumElevationInMeters,
37
MinimumDepth,minimumDepthInMeters,
38
MonthCollected,monthCollected,
39
MonthIdentified,monthIdentified,
36 40
UniqueNYInternalRecordNumber,occurrenceID,
37
order,order
38
phylum,phylum
41
Order,order,
42
PreviousCatalogNumber,otherCatalogNumbers,
43
Phylum,phylum,
44
PreparationType,preparations,
39 45
FieldNumber,recordNumber,Usage inconsistent with DwC definition
40
scientificName,scientificName
41
scientificNameAuthor,scientificNameAuthor
42
sex,sex
43
species,species
44
stateProvince,stateProvince
45
subspecies,subspecies
46
yearCollected,yearCollected
47
yearIdentified,yearIdentified
46
Collector,recordedBy,
47
RelatedCatalogItem,relatedResourceID,
48
RelationshipType,relationshipOfResource,
49
ScientificName,scientificName,
50
ScientificNameAuthor,scientificNameAuthorship,
51
Sex,sex,
52
Species,specificEpithet,
53
StateProvince,stateProvince,
54
Latitude,verbatimLatitude,
55
Longitude,verbatimLongitude,
56
YearCollected,yearCollected,
57
YearIdentified,yearIdentified,
inputs/NY/Specimen/VegBIEN.csv
1 1
NY[Veg+],VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
2 2
UniqueNYInternalRecordNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1",
3
institutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/1",
4
collectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/1",
5
catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else",
6
maximumElevation,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
3
InstitutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/1",
4
CollectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/1",
5
CatalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else",
6
MaximumElevation,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
7 7
MinimumElevation,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value/_nullIf:[null=.]/value",
8 8
MinimumElevation,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value/_nullIf:[null=.]/value",
9
maximumElevation,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1/_replace:[""\bca\.?""=]/value",
9
MaximumElevation,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1/_replace:[""\bca\.?""=]/value",
10 10
MinimumElevation,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value/_replace:[""\bca\.?""=]/value/_nullIf:[null=.]/value",
11
coordinatePrecision,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/2,
12
boundingBox,/location/locationdetermination/footprintgeometry_dwc,
13
latitude,"/location/locationdetermination/latitude/_alt/2/_nullIf:[null=0,type=float]/value",
14
longitude,"/location/locationdetermination/longitude/_alt/2/_nullIf:[null=0,type=float]/value",
15
county,"/location/locationdetermination/namedplace_id/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",
16
stateProvince,"/location/locationdetermination/namedplace_id/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",
17
country,"/location/locationdetermination/namedplace_id/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",
18
continentOcean,"/location/locationdetermination/namedplace_id/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename",
19
dayCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
20
monthCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
21
yearCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
22
individualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count,
11
CoordinatePrecision,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/2,
12
BoundingBox,/location/locationdetermination/footprintgeometry_dwc,
13
Latitude,"/location/locationdetermination/latitude/_alt/2/_nullIf:[null=0,type=float]/value",
14
Longitude,"/location/locationdetermination/longitude/_alt/2/_nullIf:[null=0,type=float]/value",
15
County,"/location/locationdetermination/namedplace_id/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",
16
StateProvince,"/location/locationdetermination/namedplace_id/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",
17
Country,"/location/locationdetermination/namedplace_id/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",
18
ContinentOcean,"/location/locationdetermination/namedplace_id/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename",
19
DayCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
20
MonthCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
21
YearCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
22
IndividualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count,
23 23
Notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_merge/1,
24 24
PlantFungusDescription,"/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_merge/2/_label[label=""plant fungus""]/value",
25 25
FieldNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber,Usage inconsistent with DwC definition
26
sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections"
27
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
28
collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
29
institutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname,
26
Sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections"
27
CatalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
28
CollectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
29
InstitutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname,
30 30
UniqueNYInternalRecordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode,
31 31
FieldNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1,Usage inconsistent with DwC definition
32
scientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/2,
33
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/givenname/_namePart/first,
34
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/middlename/_namePart/middle,
35
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/surname/_namePart/last,
36
scientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",
37
scientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",
38
subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/last",
39
species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
40
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
41
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
42
order,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",
43
class,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",
44
phylum,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",
45
kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",
46
dayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
47
monthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
48
yearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
49
collector,/location/locationevent/taxonoccurrence/verbatimcollectorname,
50
catalogNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then",
51
maximumDepth,"/location/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
52
minimumDepth,"/location/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
32
ScientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/2,
33
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/givenname/_namePart/first,
34
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/middlename/_namePart/middle,
35
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/surname/_namePart/last,
36
ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",
37
ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",
38
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/last",
39
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
40
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
41
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
42
Order,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",
43
Class,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",
44
Phylum,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",
45
Kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",
46
DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
47
MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
48
YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
49
Collector,/location/locationevent/taxonoccurrence/verbatimcollectorname,
50
CatalogNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then",
51
MaximumDepth,"/location/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
52
MinimumDepth,"/location/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
53 53
Locality,/location/locationnarrative/_merge/1/_merge/1,
54 54
Substrate,"/location/locationnarrative/_merge/1/_merge/2/_label[label=""substrate""]/value",
55 55
Vegetation,"/location/locationnarrative/_merge/1/_merge/3/_label[label=""vegetation""]/value",
56
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?"
56
Habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?"
57
BasisOfRecord,,** No join mapping for BasisOfRecord ** 
57 58
CollectorNumber,,"** No join mapping for OMIT ** Not used [1], so does not need to be mapped.
58 59

  
59 60
[1] The following query returns no rows: SELECT * FROM ""NY"".""Specimen"" WHERE ""CollectorNumber"" IS NOT NULL"
61
DateLastModified,,** No join mapping for dcterms:modified ** 
62
JulianDay,,** No join mapping for day ** 
63
PreparationType,,** No join mapping for preparations ** 
64
PreviousCatalogNumber,,** No join mapping for otherCatalogNumbers ** 
65
RelatedCatalogItem,,** No join mapping for relatedResourceID ** 
66
RelationshipType,,** No join mapping for relationshipOfResource ** 
67
TimeOfDay,,** No join mapping for eventTime ** 
68
TypeStatus,,** No join mapping for TypeStatus ** 
69
key,,** No join mapping for key ** Not used because UniqueNYInternalRecordNumber is a better pkey
inputs/NY/Specimen/new_terms.csv
1 1
key
2
BasisOfRecord
3
TypeStatus
4 2
PlantFungusDescription
5 3
Substrate
6 4
Vegetation
inputs/NY/Specimen/unmapped_terms.csv
1
""
2
""
3
""
4
""
5
""
6
""
7
""
8
""
9
""
10
""
11
""
12
""
13
""
14
""
15
""
16
""
17
""
18
""
19
""
20
""
21
""
1
key
2
dcterms:modified
3
BasisOfRecord
4
TypeStatus
22 5
OMIT
23
""
24
""
25
""
26
""
27
""
28
""
29
""
30
""
31
""
32
""
6
day
7
eventTime
33 8
Locality/_merge/1
34
""
35
""
36
""
37
""
38 9
MinimumElevation/_nullIf:[null=.]/value
39
""
40
""
41
""
42
""
43
""
44
""
45
""
46
""
47
""
10
preparations
11
otherCatalogNumbers
12
relationshipOfResource
13
relatedResourceID
48 14
Notes/_merge/1
49
""
50 15
"Notes/_merge/2/_label[label=""plant fungus""]/value"
51 16
"Locality/_merge/2/_label[label=""substrate""]/value"
52 17
"Locality/_merge/3/_label[label=""vegetation""]/value"
inputs/Madidi/Organism/map.csv
1 1
Madidi[Veg+],Veg+,Comments
2 2
Expedition,projectName,
3 3
Inventory name,plotName,
4
Number of inventory (general),,
5
Number of inventory (expedition),,
6
"Type Inventory (C, PP, TP)",,
4
Number of inventory (general),Number of inventory (general),
5
Number of inventory (expedition),Number of inventory (expedition),
6
"Type Inventory (C, PP, TP)","Type Inventory (C, PP, TP)",
7 7
Inventory code,locationID,
8 8
Tag number,tag,
9 9
Tree number,recordNumber,
10 10
Number of subplot,subplot,
11 11
Index collector,recordedBy,
12 12
Specimen,catalogNumber,
13
Similar specimen,,
14
Plot specimen,,
15
Expedition specimen,,
16
Project specimen,,
13
Similar specimen,Similar specimen,
14
Plot specimen,Plot specimen,
15
Expedition specimen,Expedition specimen,
16
Project specimen,Project specimen,
17 17
Field family,verbatimFamily,
18 18
Field name,verbatimGenus,Often = Genera
19 19
Family (revised),family,
20 20
Specie+autor,scientificName,
21 21
Genera,genus,
22 22
Specific epithet,specificEpithet,
23
Species and morphotypes,,"Contains less than ""Specie+autor"""
23
Species and morphotypes,Species and morphotypes,"Contains less than ""Specie+autor"""
24 24
Autor (revised),scientificNameAuthorship,
25 25
Determined by,identifiedBy,
26 26
Qualifier,identificationQualifier,
27
Common name,,
28
Circumference,,
27
Common name,Common name,
28
Circumference,Circumference,
29 29
Diameter,diameterBreastHeight,
30 30
Trunk,authorStemCode,
31 31
Total height,height,
32
Bole height,,trunk height
33
Habit,,
34
Phenology,,
35
Crown position,,
36
Crown shape,,
32
Bole height,Bole height,trunk height
33
Habit,verbatimGrowthForm,
34
Phenology,Phenology,
35
Crown position,Crown position,
36
Crown shape,Crown shape,
37 37
Liana presence,lianaInfestation,
38
Basal area,,"Would be basalDiameter, but need formula to translate"
38
Basal area,Basal area,"Would be basalDiameter, but need formula to translate"
39 39
Subplot X,organismX,
40 40
Subplot Y,organismY,
41
Plot X,,
42
Plot Y,,
41
Plot X,Plot X,
42
Plot Y,Plot Y,
43 43
Observations,fieldNotes,
inputs/Madidi/Organism/map.full.csv
1 1
Madidi[Veg+],Veg+,Comments
2
Basal area,Basal area,"Would be basalDiameter, but need formula to translate"
3
Bole height,Bole height,trunk height
4
Circumference,Circumference,
5
Common name,Common name,
6
Crown position,Crown position,
7
Crown shape,Crown shape,
8
Expedition specimen,Expedition specimen,
9
Number of inventory (expedition),Number of inventory (expedition),
10
Number of inventory (general),Number of inventory (general),
11
Phenology,Phenology,
12
Plot X,Plot X,
13
Plot Y,Plot Y,
14
Plot specimen,Plot specimen,
15
Project specimen,Project specimen,
16
Similar specimen,Similar specimen,
17
Species and morphotypes,Species and morphotypes,"Contains less than ""Specie+autor"""
18
"Type Inventory (C, PP, TP)","Type Inventory (C, PP, TP)",
2 19
Trunk,authorStemCode,
3 20
Specimen,catalogNumber,
4 21
Diameter,diameterBreastHeight,
5 22
Family (revised),family,
6 23
Observations,fieldNotes,
7 24
Genera,genus,
8
habit,habit
9 25
Total height,height,
10 26
Qualifier,identificationQualifier,
11 27
Determined by,identifiedBy,
......
24 40
Tag number,tag,
25 41
Field family,verbatimFamily,
26 42
Field name,verbatimGenus,Often = Genera
43
Habit,verbatimGrowthForm,
inputs/Madidi/Organism/VegBIEN.csv
23 23
Subplot Y,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/yposition,
24 24
Tree number,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1,
25 25
Specie+autor,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/2,
26
habit,"/location/locationevent/taxonoccurrence/growthform/_map:[./{T,Arbol,palm}=tree,./{H,""Hemiepífito""}=hemiepiphyte,./{L,l,""L?"",Liana}=liana,E=epiphyte,S=shrub,Hb=herb,""vine-herbaceous""=vine,graminoid=grass,rosette=forb,*=*]/value","According to <http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data.habit>, <https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/SALVIAS#Habit>"
26
Habit,"/location/locationevent/taxonoccurrence/growthform/_map:[./{T,Arbol,palm}=tree,./{H,""Hemiepífito""}=hemiepiphyte,./{L,l,""L?"",Liana}=liana,E=epiphyte,S=shrub,Hb=herb,""vine-herbaceous""=vine,graminoid=grass,rosette=forb,*=*]/value","According to <http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data.habit>, <https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/SALVIAS#Habit>"
27 27
Determined by,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/givenname/_namePart/first,
28 28
Determined by,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/middlename/_namePart/middle,
29 29
Determined by,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/surname/_namePart/last,
......
37 37
Field family,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/plantconcept/plantname_id/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
38 38
Index collector,/location/locationevent/taxonoccurrence/verbatimcollectorname,
39 39
Specimen,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then",
40
Basal area,,"** No join mapping for Basal area ** Would be basalDiameter, but need formula to translate"
41
Bole height,,** No join mapping for Bole height ** trunk height
42
Circumference,,** No join mapping for Circumference ** 
43
Common name,,** No join mapping for Common name ** 
44
Crown position,,** No join mapping for Crown position ** 
45
Crown shape,,** No join mapping for Crown shape ** 
46
Expedition specimen,,** No join mapping for Expedition specimen ** 
47
Number of inventory (expedition),,** No join mapping for Number of inventory (expedition) ** 
48
Number of inventory (general),,** No join mapping for Number of inventory (general) ** 
49
Phenology,,** No join mapping for Phenology ** 
50
Plot X,,** No join mapping for Plot X ** 
... This diff was truncated because it exceeds the maximum size that can be displayed.

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