Project

General

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1 4686 aaronmk
VegCore,VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
2 4337 aaronmk
subplotID,"/location/_if[@name=""if subplot""]/cond/_exists/_first/1",
3
subplot,"/location/_if[@name=""if subplot""]/cond/_exists/_first/2",
4 4336 aaronmk
plotName,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/1",
5
locationID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists",
6
fieldNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/else",
7
occurrenceID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1",
8
institutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/1",
9
collectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/1",
10
collectionID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/2",
11
voucherType,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left",
12
catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else",
13 4324 aaronmk
locationID,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode",
14
plotName,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode",
15
locationID,"/location/_if[@name=""if subplot""]/then/parent_id/location/sourceaccessioncode",
16 4082 aaronmk
plotArea,/location/area,
17 4333 aaronmk
subplot,/location/authorlocationcode,
18 3996 aaronmk
verbatimElevation,"/location/elevation/_alt/1/_replace:[""\bca\.?""=]/value",
19 3984 aaronmk
maximumElevationInMeters,"/location/elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
20 3969 aaronmk
minimumElevationInMeters,"/location/elevation/_alt/2/_avg/min/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",
21
minimumElevationInMeters,"/location/elevationrange/_range/from/_units:[default=m,to=m,to=]/value/_rangeStart/value/_replace:[""\bca\.?""=]/value",
22 3984 aaronmk
maximumElevationInMeters,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1/_replace:[""\bca\.?""=]/value",
23 3969 aaronmk
minimumElevationInMeters,"/location/elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value/_replace:[""\bca\.?""=]/value",
24 4082 aaronmk
landform,/location/landform,
25 3969 aaronmk
coordinateUncertaintyInMeters,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/1,
26
coordinatePrecision,/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/2,
27
footprintWKT,/location/locationdetermination/footprintgeometry_dwc,
28
decimalLatitude,"/location/locationdetermination/latitude/_alt/1/_nullIf:[null=0,type=float]/value",
29 4013 aaronmk
verbatimLatitude,"/location/locationdetermination/latitude/_alt/2/_nullIf:[null=0,type=float]/value",
30 3969 aaronmk
decimalLongitude,"/location/locationdetermination/longitude/_alt/1/_nullIf:[null=0,type=float]/value",
31 4013 aaronmk
verbatimLongitude,"/location/locationdetermination/longitude/_alt/2/_nullIf:[null=0,type=float]/value",
32 4622 aaronmk
county,"/location/locationdetermination/namedplace_id/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",
33
stateProvince,"/location/locationdetermination/namedplace_id/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",
34
country,"/location/locationdetermination/namedplace_id/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",
35
continent,"/location/locationdetermination/namedplace_id/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename",
36 3996 aaronmk
samplingProtocol,/location/locationevent/*_id/method/name,
37 4082 aaronmk
projectName,/location/locationevent/*_id/project/projectname,
38
projectID,/location/locationevent/*_id/project/sourceaccessioncode,
39 4340 aaronmk
subplotID,"/location/locationevent/_if[@name=""if subplot""]/cond/_exists/_first/1",
40
subplot,"/location/locationevent/_if[@name=""if subplot""]/cond/_exists/_first/2",
41
fieldNumber,"/location/locationevent/_if[@name=""if subplot""]/else/authoreventcode",
42
eventID,"/location/locationevent/_if[@name=""if subplot""]/else/sourceaccessioncode",
43 4458 aaronmk
eventID,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/cond/_exists/_first/1",
44
fieldNumber,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/cond/_exists/_first/2",
45
plotName,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/then/parent_id/locationevent/*_id/location/authorlocationcode",
46
locationID,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode",
47
fieldNumber,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/then/parent_id/locationevent/authorlocationcode",
48
eventID,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/then/parent_id/locationevent/sourceaccessioncode",
49 4082 aaronmk
communityID,/location/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname,
50
communityName,/location/locationevent/commclass/commdetermination/*_id/commconcept/commdescription,
51 4563 aaronmk
endDate,/location/locationevent/obsenddate/_*/date/_alt/1,
52
eventDate,/location/locationevent/obsenddate/_*/date/_alt/2/_dateRangeEnd/value,
53
startDate,/location/locationevent/obsstartdate/_*/date/_alt/1,
54
eventDate,/location/locationevent/obsstartdate/_*/date/_alt/2/_dateRangeStart/value,
55 4082 aaronmk
precipitation,/location/locationevent/precipitation,
56
acidity,/location/locationevent/soilobs/acidity,
57
baseSaturation,/location/locationevent/soilobs/basesaturation,
58
calcium,/location/locationevent/soilobs/calcium,
59
carbon,/location/locationevent/soilobs/carbon,
60
cationExchangeCapacity,/location/locationevent/soilobs/cationexchangecapacity,
61
clay,/location/locationevent/soilobs/clay,
62
conductivity,/location/locationevent/soilobs/conductivity,
63
magnesium,/location/locationevent/soilobs/magnesium,
64
nitrogen,/location/locationevent/soilobs/nitrogen,
65
organic,/location/locationevent/soilobs/organic,
66
ph,/location/locationevent/soilobs/ph,
67
phosphorus,/location/locationevent/soilobs/phosphorus,
68
potassium,/location/locationevent/soilobs/potassium,
69
sand,/location/locationevent/soilobs/sand,
70
silt,/location/locationevent/soilobs/silt,
71
sodium,/location/locationevent/soilobs/sodium,
72
texture,/location/locationevent/soilobs/texture,
73 4566 aaronmk
dateCollected,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/1/_*/date,
74
dayCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
75
monthCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
76
yearCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
77 3982 aaronmk
individualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count,
78 4082 aaronmk
coverPercent,/location/locationevent/taxonoccurrence/aggregateoccurrence/cover,
79
censusNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]:[@fkey=tablerecord_id]/definedvalue",
80
volumeCanopy,/location/locationevent/taxonoccurrence/aggregateoccurrence/linecover,
81 3969 aaronmk
fieldNotes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes,
82 4076 aaronmk
recordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber,
83 3969 aaronmk
sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections"
84 4075 aaronmk
individualID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode,
85 4082 aaronmk
voucherType,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left",
86 4057 aaronmk
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
87 4327 aaronmk
collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
88
collectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/2,
89 3969 aaronmk
institutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname,
90
occurrenceID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode,
91 4082 aaronmk
stemCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemcount,
92 4364 aaronmk
authorStemCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/authorstemcode,
93 4082 aaronmk
basalDiameter,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/basaldiameter,
94
canopyForm,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]:[@fkey=tablerecord_id]/definedvalue",
95
canopyPosition,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]:[@fkey=tablerecord_id]/definedvalue",
96
diameterBreastHeightGentry,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=gentryDiameter]]:[@fkey=tablerecord_id]/definedvalue",
97
lianaInfestation,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=lianaInfestation]]:[@fkey=tablerecord_id]/definedvalue",
98
stemNotes,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=notes]]:[@fkey=tablerecord_id]/definedvalue",
99
diameterBreastHeight,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/diameterbreastheight,
100
height,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/height,
101
heightFirstBranch,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/heightfirstbranch,
102 4359 aaronmk
stemID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/sourceaccessioncode,
103 4082 aaronmk
tag,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/stemtag[""""/iscurrent/_alt/2=true]/tag",Quotes sort it before tag2
104
previousTag,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/stemtag[iscurrent=true]:[../stemtag?[iscurrent/_alt/2=true]/iscurrent/_alt/1=false]/tag,
105 4279 aaronmk
organismX,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/xposition,
106
organismY,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/yposition,
107 4073 aaronmk
recordNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/1,
108 4194 aaronmk
verbatimScientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/1,
109 4707 aaronmk
scientificNameWithAuthorship,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/2,
110
scientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_alt/2/_alt/3,
111 4082 aaronmk
growthForm,/location/locationevent/taxonoccurrence/growthform,
112 4559 aaronmk
verbatimGrowthForm,"/location/locationevent/taxonoccurrence/growthform/_map:[./{T,Arbol,palm}=tree,./{H,""Hemiepífito""}=hemiepiphyte,./{L,l,""L?"",Liana}=liana,E=epiphyte,S=shrub,Hb=herb,""vine-herbaceous""=vine,graminoid=grass,rosette=forb,*=*]/value","According to <http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data.habit>, <https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/SALVIAS#Habit>"
113 4554 aaronmk
cultivated,/location/locationevent/taxonoccurrence/iscultivated/_alt/1,
114
establishmentMeans,"/location/locationevent/taxonoccurrence/iscultivated/_alt/2/_map:[cultivated=t,wild=f,*=]/value",
115 3969 aaronmk
establishmentMeans,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value",
116 4371 aaronmk
taxonOccurrenceID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/1,
117
individualID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/2,
118 4205 aaronmk
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/givenname/_namePart/first,
119
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/middlename/_namePart/middle,
120
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/surname/_namePart/last,
121 4703 aaronmk
class,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/class,
122
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/family,
123
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/genus,
124
kingdom,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/kingdom,
125
order,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/order,
126
phylum,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/phylum,
127
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/scientificname,
128
scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/scientificnameauthor,
129 4705 aaronmk
scientificNameWithAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/scientificnamewithauthor,
130 4703 aaronmk
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/species,
131
taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/subspecies/_name/first,
132
infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/plantconcept/subspecies/_name/last,
133 4560 aaronmk
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_*/date/_dateRangeStart/value,
134
dayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
135
monthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
136
yearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
137 4205 aaronmk
taxonRemarks,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/notes,
138
identificationQualifier,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/taxonfit,
139 4703 aaronmk
verbatimClass,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/plantconcept/class,
140
verbatimFamily,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/plantconcept/family,
141
verbatimGenus,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/plantconcept/genus,
142
verbatimKingdom,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/plantconcept/kingdom,
143
verbatimOrder,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/plantconcept/order,
144
verbatimPhylum,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/plantconcept/phylum,
145
verbatimScientificName,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/plantconcept/scientificname,
146
verbatimScientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/plantconcept/scientificnameauthor,
147
verbatimSpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/plantconcept/species,
148
verbatimInfraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/plantconcept/subspecies,
149 4193 aaronmk
verbatimIdentificationQualifier,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/taxonfit,
150 3969 aaronmk
recordedBy,/location/locationevent/taxonoccurrence/verbatimcollectorname,
151 4082 aaronmk
recordedBy.givenName,/location/locationevent/taxonoccurrence/verbatimcollectorname/_name/first,
152
recordedBy.surName,/location/locationevent/taxonoccurrence/verbatimcollectorname/_name/last,
153
voucherType,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left",
154 4079 aaronmk
catalogNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then",
155 4082 aaronmk
temperature,/location/locationevent/temperature,
156 3984 aaronmk
maximumDepthInMeters,"/location/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
157
minimumDepthInMeters,"/location/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value/_replace:[""\bca\.?""=]/value",
158 3969 aaronmk
locality,/location/locationnarrative/_merge/1,
159
verbatimLocality,/location/locationnarrative/_merge/2,
160
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?"
161 4082 aaronmk
plotNotes,/location/notespublic,
162 4582 aaronmk
slopeAspect,/location/slopeaspect/_alt/1/_compass/value,
163
maxSlopeAspect,/location/slopeaspect/_alt/2/_avg/max,
164
minSlopeAspect,/location/slopeaspect/_alt/2/_avg/min,
165
slopeGradient,/location/slopegradient/_alt/1,
166
maxSlopeGradient,/location/slopegradient/_alt/2/_avg/max,
167
minSlopeGradient,/location/slopegradient/_alt/2/_avg/min,
168 4286 aaronmk
subplotID,/location/sourceaccessioncode,
169 4283 aaronmk
subplotX,/location/sublocationxposition,
170
subplotY,/location/sublocationyposition,