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Name Size Revision Age Author Comment
  _archive 1598 over 12 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 4200 over 12 years Aaron Marcuse-Kubitza backups/: svn:ignore: Also ignore .*, which inc...
  bin 4696 about 12 years Aaron Marcuse-Kubitza Removed no longer used ucase_first
  config 272 almost 13 years Aaron Marcuse-Kubitza Moved bien_password to new config dir
  inputs 4714 about 12 years Aaron Marcuse-Kubitza Updated aggregated unmapped_terms.csv, new_term...
  lib 4614 about 12 years Aaron Marcuse-Kubitza lib/mappings.Makefile: missing_mappings: Displa...
  mappings 4707 about 12 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: Moved scientificN...
  schemas 4716 about 12 years Aaron Marcuse-Kubitza schemas/vegbien.sql: plantname: Renamed plantna...
  to_do 4524 about 12 years Aaron Marcuse-Kubitza to_do/timeline.doc: Updated to reflect addition...
  validation 4523 about 12 years Aaron Marcuse-Kubitza Added validation/
Makefile 9.91 KB 4613 about 12 years Aaron Marcuse-Kubitza root Makefile: Maps validation: Removed no long...
README.TXT 10.9 KB 4677 about 12 years Aaron Marcuse-Kubitza README.TXT: Data import: Added steps to record ...
map 1.22 KB 3475 over 12 years Aaron Marcuse-Kubitza root map: Run bin/map with a nice increment of ...
new_terms.csv 8.09 KB 4714 about 12 years Aaron Marcuse-Kubitza Updated aggregated unmapped_terms.csv, new_term...
unmapped_terms.csv 5.91 KB 4714 about 12 years Aaron Marcuse-Kubitza Updated aggregated unmapped_terms.csv, new_term...

Latest revisions

# Date Author Comment
4716 09/14/2012 11:02 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: plantname: Renamed plantname field to taxonname for consistency with DwC's Taxon category

4715 09/14/2012 10:55 PM Aaron Marcuse-Kubitza

Regenerated vegbien.ERD exports

4714 09/14/2012 10:49 PM Aaron Marcuse-Kubitza

Updated aggregated unmapped_terms.csv, new_terms.csv. This removes terms that contained a filter (which is now in a separate column) and moves new terms that are unmapped from new_terms.csv to unmapped_terms.csv. Note that the majority of unmapped terms are from VegBank's huge tables, and are not part of the core fields needed for the analytical DB.

4713 09/14/2012 10:41 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: taxonrank: Switched to using extended taxonomic ranks list derived from VegX at <https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/VegBIEN_taxonomic_schema#Extended&gt;. This renames *division to *phylum and splits up 'cultivar/forma'.

4712 09/14/2012 10:39 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: taxonrank: Removed 'authority', which doesn't belong as a taxonomic rank

4711 09/14/2012 10:38 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: plantname: Added authority so each taxonomic level can have its own authority (author). Include it in the plantname_unique unique index because plantname is a globally scoped table.

4710 09/14/2012 10:25 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: taxonrank: Removed 'binomial', which doesn't belong as a taxonomic rank

4709 09/14/2012 10:24 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: Changed analytical_db_view to use new denormalized taxonomic names in plantconcept, which significantly reduces the number of joins. Note that changing the tables used by a view which depends on other tables will cause those tables to be reordered in dependency order to appear before the view, causing things to be moved around in the svn diff.

4708 09/14/2012 10:01 PM Aaron Marcuse-Kubitza

inputs/Madidi/Organism/map.csv: Remapped Specie+autor to new scientificNameWithAuthorship. Mapped Species and morphotypes to now-available scientificName.

4707 09/14/2012 09:59 PM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: Moved scientificNameWithAuthorship before scientificName in taxonoccurrence.authortaxoncode's _alts

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