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root/inputs/ARIZ/Specimen/VegBIEN.csv @ 4932

1 4651 aaronmk 
ARIZ,VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
2 4638 aaronmk 
GlobalUniqueIdentifier,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1",
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InstitutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/1",
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CollectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/1",
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CatalogNumberNumeric,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else/_alt/1",
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CatalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else/_alt/2",Don't overwrite CatalogNumberNumeric
7 4821 aaronmk 
MaximumElevationInMeters,/location/elevation_m/_alt/2/_avg/max,"Contains some verbatim values, including ranges and units"
8 4822 aaronmk 
MinimumElevationInMeters,/location/elevation_m/_alt/2/_avg/min,"Contains some verbatim values, including ranges and units"
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CoordinateUncertaintyInMeters,/location/locationcoords/coordsaccuracy_deg/_noCV/value/_alt/1,
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BoundingBox,/location/locationcoords/footprintgeometry_dwc,
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DecimalLatitude,"/location/locationcoords/latitude_deg/_nullIf:[null=0,type=float]/value",
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DecimalLongitude,"/location/locationcoords/longitude_deg/_nullIf:[null=0,type=float]/value",
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VerbatimCollectingDate,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/1/_*/date/_alt/0,
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DayCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
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MonthCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
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YearCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
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IndividualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count,
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FieldNotes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes,
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CollectorNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber,
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Sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections"
21 4183 aaronmk 
CatalogNumberNumeric,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else/_alt/1",
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CatalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else/_alt/2",Don't overwrite CatalogNumberNumeric
23 4638 aaronmk 
CollectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
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InstitutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname,
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GlobalUniqueIdentifier,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode,
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CollectorNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_first/1/_first/1,
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ScientificNameAuthor,/location/locationevent/taxonoccurrence/authortaxoncode/_first/2/_first/3/_alt/1,Contains the binomial in addition to the authority
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ScientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_first/2/_first/3/_alt/2,
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GlobalUniqueIdentifier,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/3,
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IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/givenname/_namePart/first,
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IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/middlename/_namePart/middle,
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IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/surname/_namePart/last,
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Class,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/class,
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Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/family,
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Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/genus,
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Kingdom,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/kingdom,
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Order,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/order,
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Phylum,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/phylum,
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ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/scientificname/_alt/1,Contains the binomial in addition to the authority
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ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/scientificname/_alt/2,
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Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/species,
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Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/subspecies/_alt/1,
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DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
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MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
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YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
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Remarks,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/notes,
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IdentificationModifier,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/taxonfit,
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Collector,/location/locationevent/taxonoccurrence/verbatimcollectorname,
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CatalogNumberNumeric,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then/_alt/1",
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CatalogNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then/_alt/2",Don't overwrite CatalogNumberNumeric
51 4820 aaronmk 
MaximumDepthInMeters,/location/locationevent/waterdepth_m/_avg/max,
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MinimumDepthInMeters,/location/locationevent/waterdepth_m/_avg/min,
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Locality,/location/locationnarrative/_merge/1,
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ContinentOcean,/location/locationplace/*_id/placepath/continent,
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Country,/location/locationplace/*_id/placepath/country,
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County,/location/locationplace/*_id/placepath/county,
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StateProvince,/location/locationplace/*_id/placepath/stateprovince,
58 4164 aaronmk 
AgeClass,,** No join mapping for lifeStage **
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BasisOfRecord,,** No join mapping for basisOfRecord **
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DateLastModified,,** No join mapping for dcterms:modified **
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FieldNumber,,"** No non-empty join mapping for OMIT ** Usage inconsistent with DwC definition: meaning is recordNumber. Identical to CollectorNumber [1], so does not need to be mapped.
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[1] The following query returns no rows: SELECT * FROM ""ARIZ"".""Specimen"" WHERE ""CollectorNumber"" IS DISTINCT FROM ""FieldNumber"""


      

      

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            aaronmk
        
        
GenBankNum,,"** No join mapping for associatedSequences/_label[label=""GenBank""]/value ** "


      

      

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GeorefMethod,,** No join mapping for georeferenceProtocol **


      

      

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            aaronmk
        
        
HigherGeography,,** No join mapping for higherGeography **


      

      

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HorizontalDatum,,** No non-empty join mapping for UNUSED **


      

      

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Island,,** No join mapping for island **


      

      

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IslandGroup,,** No join mapping for islandGroup **


      

      

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            aaronmk
        
        
JulianDay,,** No join mapping for day **


      

      

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            aaronmk
        
        
LatLongComments,,** No join mapping for georeferenceRemarks **


      

      

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OriginalCoordinateSystem,,** No join mapping for verbatimSRS **


      

      

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OtherCatalogNumbers,,** No join mapping for relatedResourceID/_alt/1 **


      

      

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Preparations,,** No join mapping for preparations **


      

      

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            aaronmk
        
        
RelatedCatalogedItems,,** No join mapping for relatedResourceID/_alt/2 ** Used only when OtherCatalogNumbers is NULL


      

      

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TimeCollected,,** No join mapping for eventTime **


      

      

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Tissues,,** No non-empty join mapping for UNUSED **


      

      

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TypeStatus,,** No join mapping for typeStatus **


      

      

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VerbatimDepth,,** No join mapping for verbatimDepth **


      

      

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VerbatimElevation,,** No non-empty join mapping for UNUSED **


      

      

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VerbatimLatitude,,** No non-empty join mapping for UNUSED **


      

      

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VerbatimLongitude,,** No non-empty join mapping for UNUSED **