Revision 5072
Added by Aaron Marcuse-Kubitza about 12 years ago
| inputs/GBIF/Specimen/test.xml.ref | ||
|---|---|---|
| 64 | 64 |
<taxonomicname>$ScientificName</taxonomicname> |
| 65 | 65 |
<taxonomicnamewithauthor> |
| 66 | 66 |
<_join_words> |
| 67 |
<1>$ScientificName</1> |
|
| 67 |
<1> |
|
| 68 |
<_alt> |
|
| 69 |
<1>$ScientificName</1> |
|
| 70 |
<2> |
|
| 71 |
<_join_words> |
|
| 72 |
<1>$Family</1> |
|
| 73 |
<2>$Genus</2> |
|
| 74 |
<3>$SpecificEpithet</3> |
|
| 75 |
<5>$InfraspecificEpithet</5> |
|
| 76 |
</_join_words> |
|
| 77 |
</2> |
|
| 78 |
</_alt> |
|
| 79 |
</1> |
|
| 68 | 80 |
<2>$AuthorOfScientificName</2> |
| 69 | 81 |
</_join_words> |
| 70 | 82 |
</taxonomicnamewithauthor> |
| ... | ... | |
| 78 | 90 |
<family>$GBIFFamilyOriginal</family> |
| 79 | 91 |
<genus>$GBIFGenusOriginal</genus> |
| 80 | 92 |
<taxonomicname>$ScientificNameOriginal</taxonomicname> |
| 81 |
<taxonomicnamewithauthor>$ScientificNameOriginal</taxonomicnamewithauthor> |
|
| 93 |
<taxonomicnamewithauthor> |
|
| 94 |
<_alt> |
|
| 95 |
<1>$ScientificNameOriginal</1> |
|
| 96 |
<2> |
|
| 97 |
<_join_words> |
|
| 98 |
<1>$GBIFFamilyOriginal</1> |
|
| 99 |
<2>$GBIFGenusOriginal</2> |
|
| 100 |
</_join_words> |
|
| 101 |
</2> |
|
| 102 |
</_alt> |
|
| 103 |
</taxonomicnamewithauthor> |
|
| 82 | 104 |
</taxonpath> |
| 83 | 105 |
</taxonpath_id> |
| 84 | 106 |
</taxondetermination> |
| inputs/SpeciesLink/Specimen/VegBIEN.csv | ||
|---|---|---|
| 132 | 132 |
conceptual_darwin_2003_1_0_ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicname, |
| 133 | 133 |
dwc_dwcore_ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicname, |
| 134 | 134 |
dwc_terms_scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicname, |
| 135 |
conceptual_darwin_2003_1_0_ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/1,
|
|
| 136 |
dwc_dwcore_ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/1,
|
|
| 137 |
dwc_terms_scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/1,
|
|
| 138 |
conceptual_darwin_2003_1_0_Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/1,
|
|
| 139 |
dwc_dwcore_Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/1,
|
|
| 140 |
dwc_terms_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/1,
|
|
| 141 |
conceptual_darwin_2003_1_0_Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/2,
|
|
| 142 |
dwc_dwcore_Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/2,
|
|
| 143 |
dwc_terms_genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/2,
|
|
| 144 |
conceptual_darwin_2003_1_0_Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/3,
|
|
| 145 |
dwc_dwcore_SpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/3,
|
|
| 146 |
dwc_terms_specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/3,
|
|
| 147 |
conceptual_darwin_2003_1_0_Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/4,
|
|
| 148 |
dwc_dwcore_InfraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/5/_join_words/2,
|
|
| 149 |
dwc_terms_infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/5/_join_words/2,
|
|
| 150 |
dwc_terms_scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/2/_alt/1,
|
|
| 151 |
conceptual_darwin_2003_1_0_ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/2/_alt/2,
|
|
| 152 |
dwc_dwcore_AuthorYearOfScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/2/_alt/3,
|
|
| 135 |
conceptual_darwin_2003_1_0_ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/1,
|
|
| 136 |
dwc_dwcore_ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/1,
|
|
| 137 |
dwc_terms_scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/1,
|
|
| 138 |
conceptual_darwin_2003_1_0_Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/1,
|
|
| 139 |
dwc_dwcore_Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/1,
|
|
| 140 |
dwc_terms_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/1,
|
|
| 141 |
conceptual_darwin_2003_1_0_Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/2,
|
|
| 142 |
dwc_dwcore_Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/2,
|
|
| 143 |
dwc_terms_genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/2,
|
|
| 144 |
conceptual_darwin_2003_1_0_Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/3,
|
|
| 145 |
dwc_dwcore_SpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/3,
|
|
| 146 |
dwc_terms_specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/3,
|
|
| 147 |
conceptual_darwin_2003_1_0_Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/4,
|
|
| 148 |
dwc_dwcore_InfraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2,
|
|
| 149 |
dwc_terms_infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2,
|
|
| 150 |
dwc_terms_scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/2/_alt/1,
|
|
| 151 |
conceptual_darwin_2003_1_0_ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/2/_alt/2,
|
|
| 152 |
dwc_dwcore_AuthorYearOfScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/2/_alt/3,
|
|
| 153 | 153 |
dwc_terms_dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_*/date/_dateRangeStart/value, |
| 154 | 154 |
conceptual_darwin_2003_1_0_DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value", |
| 155 | 155 |
conceptual_darwin_2003_1_0_MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value", |
| inputs/MO/Specimen/VegBIEN.csv | ||
|---|---|---|
| 29 | 29 |
species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/species, |
| 30 | 30 |
Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/subspecies/_alt/1, |
| 31 | 31 |
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicname, |
| 32 |
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/1,
|
|
| 33 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/1,
|
|
| 34 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/2,
|
|
| 35 |
species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/3,
|
|
| 36 |
Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/4,
|
|
| 37 |
ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/2,
|
|
| 32 |
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/1,
|
|
| 33 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/1,
|
|
| 34 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/2,
|
|
| 35 |
species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/3,
|
|
| 36 |
Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/4,
|
|
| 37 |
ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/2,
|
|
| 38 | 38 |
Collector,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
| 39 | 39 |
CatalogNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then", |
| 40 | 40 |
Locality,/location/locationnarrative/_merge/1, |
| inputs/VegBank/taxonobservation_/VegBIEN.csv | ||
|---|---|---|
| 17 | 17 |
Order,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/order, |
| 18 | 18 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/species, |
| 19 | 19 |
Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/subspecies/_alt/1, |
| 20 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/1,
|
|
| 21 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/2,
|
|
| 22 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/3,
|
|
| 23 |
Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/4,
|
|
| 24 |
Variety,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/6/_join_words:[1=var.]/2,
|
|
| 25 |
Forma,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/7/_join_words:[1=fm.]/2,
|
|
| 20 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/1,
|
|
| 21 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/2,
|
|
| 22 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/3,
|
|
| 23 |
Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/4,
|
|
| 24 |
Variety,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/6/_join_words:[1=var.]/2,
|
|
| 25 |
Forma,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/7/_join_words:[1=fm.]/2,
|
|
| 26 | 26 |
Variety,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/variety, |
| 27 | 27 |
interpretationdate,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_*/date/_dateRangeStart/value, |
| 28 | 28 |
taxonfit,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/taxonfit, |
| 29 | 29 |
authorplantname,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicname, |
| 30 |
authorplantname,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/1,
|
|
| 30 |
authorplantname,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/1,
|
|
| 31 | 31 |
museumaccessionnumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then", |
| 32 | 32 |
Division,,** No join mapping for *Division ** |
| 33 | 33 |
Subclass,,** No join mapping for *Subclass ** |
| inputs/QMOR/Specimen/test.xml.ref | ||
|---|---|---|
| 117 | 117 |
<taxonomicname>$scientificName</taxonomicname> |
| 118 | 118 |
<taxonomicnamewithauthor> |
| 119 | 119 |
<_join_words> |
| 120 |
<1>$scientificName</1> |
|
| 120 |
<1> |
|
| 121 |
<_alt> |
|
| 122 |
<1>$scientificName</1> |
|
| 123 |
<2> |
|
| 124 |
<_join_words> |
|
| 125 |
<1>$family</1> |
|
| 126 |
<2>$genus</2> |
|
| 127 |
<3>$specificEpithet</3> |
|
| 128 |
<5> |
|
| 129 |
<_join_words> |
|
| 130 |
<1>$taxonRank</1> |
|
| 131 |
<2>$infraspecificEpithet</2> |
|
| 132 |
</_join_words> |
|
| 133 |
</5> |
|
| 134 |
</_join_words> |
|
| 135 |
</2> |
|
| 136 |
</_alt> |
|
| 137 |
</1> |
|
| 121 | 138 |
<2>$scientificNameAuthorship</2> |
| 122 | 139 |
</_join_words> |
| 123 | 140 |
</taxonomicnamewithauthor> |
| mappings/VegCore-VegBIEN.csv | ||
|---|---|---|
| 142 | 142 |
taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/subspecies/_alt/2/_join_words/1, |
| 143 | 143 |
infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/subspecies/_alt/2/_join_words/2, |
| 144 | 144 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicname, |
| 145 |
scientificNameWithAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/1,
|
|
| 146 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/1,
|
|
| 147 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/1,
|
|
| 148 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/2,
|
|
| 149 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/3,
|
|
| 150 |
subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/4,
|
|
| 151 |
taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/5/_join_words/1,
|
|
| 152 |
infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/5/_join_words/2,
|
|
| 153 |
variety,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/6/_join_words:[1=var.]/2,
|
|
| 154 |
forma,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/7/_join_words:[1=fm.]/2,
|
|
| 155 |
cultivar,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/8/_join_words:[1=cult.]/2,
|
|
| 156 |
scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/2,
|
|
| 145 |
scientificNameWithAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/1,
|
|
| 146 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/1,
|
|
| 147 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/1,
|
|
| 148 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/2,
|
|
| 149 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/3,
|
|
| 150 |
subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/4,
|
|
| 151 |
taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1,
|
|
| 152 |
infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2,
|
|
| 153 |
variety,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/6/_join_words:[1=var.]/2,
|
|
| 154 |
forma,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/7/_join_words:[1=fm.]/2,
|
|
| 155 |
cultivar,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/8/_join_words:[1=cult.]/2,
|
|
| 156 |
scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/2,
|
|
| 157 | 157 |
verbatimScientificNameWithAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonpath:[@fkey=canon_taxonpath_id]/taxonomicnamewithauthor, |
| 158 | 158 |
variety,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/variety, |
| 159 | 159 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_*/date/_dateRangeStart/value, |
| ... | ... | |
| 176 | 176 |
originalTaxonRank,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/subspecies/_alt/2/_join_words/1, |
| 177 | 177 |
originalInfraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/subspecies/_alt/2/_join_words/2, |
| 178 | 178 |
originalScientificName,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicname, |
| 179 |
originalScientificNameWithAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicnamewithauthor/_first/1,
|
|
| 180 |
originalScientificName,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/1,
|
|
| 181 |
originalFamily,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/1,
|
|
| 182 |
originalGenus,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/2,
|
|
| 183 |
originalSpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/3,
|
|
| 184 |
originalSubspecies,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/4,
|
|
| 185 |
originalTaxonRank,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/5/_join_words/1,
|
|
| 186 |
originalInfraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/5/_join_words/2,
|
|
| 187 |
originalVariety,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/6/_join_words:[1=var.]/2,
|
|
| 188 |
originalForma,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/7/_join_words:[1=fm.]/2,
|
|
| 189 |
originalCultivar,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/8/_join_words:[1=cult.]/2,
|
|
| 190 |
originalScientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/2,
|
|
| 179 |
originalScientificNameWithAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicnamewithauthor/_alt/1,
|
|
| 180 |
originalScientificName,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/1,
|
|
| 181 |
originalFamily,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/1,
|
|
| 182 |
originalGenus,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/2,
|
|
| 183 |
originalSpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/3,
|
|
| 184 |
originalSubspecies,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/4,
|
|
| 185 |
originalTaxonRank,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1,
|
|
| 186 |
originalInfraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2,
|
|
| 187 |
originalVariety,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/6/_join_words:[1=var.]/2,
|
|
| 188 |
originalForma,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/7/_join_words:[1=fm.]/2,
|
|
| 189 |
originalCultivar,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/8/_join_words:[1=cult.]/2,
|
|
| 190 |
originalScientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/2,
|
|
| 191 | 191 |
originalVariety,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/variety, |
| 192 | 192 |
originalIdentificationQualifier,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/taxonfit, |
| 193 | 193 |
recordedBy,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
| inputs/MT/Specimen/VegBIEN.csv | ||
|---|---|---|
| 13 | 13 |
id,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/3, |
| 14 | 14 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/family, |
| 15 | 15 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/genus, |
| 16 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/1,
|
|
| 17 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/2,
|
|
| 16 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/1,
|
|
| 17 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/2,
|
|
| 18 | 18 |
locality,/location/locationnarrative/_merge/1, |
| 19 | 19 |
continent,/location/locationplace/*_id/placepath/continent, |
| 20 | 20 |
basisOfRecord,,** No join mapping for basisOfRecord ** |
| inputs/XAL/Specimen/VegBIEN.csv | ||
|---|---|---|
| 33 | 33 |
darwin:Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/species, |
| 34 | 34 |
darwin:Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/subspecies/_alt/1, |
| 35 | 35 |
darwin:ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicname, |
| 36 |
darwin:ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/1,
|
|
| 37 |
darwin:Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/1,
|
|
| 38 |
darwin:Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/2,
|
|
| 39 |
darwin:Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/3,
|
|
| 40 |
darwin:Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/4,
|
|
| 41 |
darwin:ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/2,
|
|
| 36 |
darwin:ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/1,
|
|
| 37 |
darwin:Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/1,
|
|
| 38 |
darwin:Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/2,
|
|
| 39 |
darwin:Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/3,
|
|
| 40 |
darwin:Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/4,
|
|
| 41 |
darwin:ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/2,
|
|
| 42 | 42 |
darwin:DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value", |
| 43 | 43 |
darwin:MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value", |
| 44 | 44 |
darwin:YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value", |
| inputs/TEAM/VL/VegBIEN.csv | ||
|---|---|---|
| 23 | 23 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/family, |
| 24 | 24 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/genus, |
| 25 | 25 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/species, |
| 26 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/1,
|
|
| 27 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/2,
|
|
| 28 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/3,
|
|
| 26 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/1,
|
|
| 27 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/2,
|
|
| 28 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/3,
|
|
| 29 | 29 |
Names of Collectors,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
| 30 | 30 |
Comments,,** No join mapping for *Comments ** |
| 31 | 31 |
Condition Codes,,** No join mapping for *Condition Codes ** |
| inputs/TEAM/VT/VegBIEN.csv | ||
|---|---|---|
| 23 | 23 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/family, |
| 24 | 24 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/genus, |
| 25 | 25 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/species, |
| 26 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/1,
|
|
| 27 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/2,
|
|
| 28 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/3,
|
|
| 26 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/1,
|
|
| 27 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/2,
|
|
| 28 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/3,
|
|
| 29 | 29 |
Names of Collectors,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
| 30 | 30 |
Comments,,** No join mapping for *Comments ** |
| 31 | 31 |
Condition Codes,,** No join mapping for *Condition Codes ** |
| inputs/NY/Specimen/VegBIEN.csv | ||
|---|---|---|
| 38 | 38 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/species, |
| 39 | 39 |
Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/subspecies/_alt/1, |
| 40 | 40 |
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicname, |
| 41 |
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/1,
|
|
| 42 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/1,
|
|
| 43 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/2,
|
|
| 44 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/3,
|
|
| 45 |
Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/4,
|
|
| 46 |
ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/2,
|
|
| 41 |
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/1,
|
|
| 42 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/1,
|
|
| 43 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/2,
|
|
| 44 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/3,
|
|
| 45 |
Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/4,
|
|
| 46 |
ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/2,
|
|
| 47 | 47 |
DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value", |
| 48 | 48 |
MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value", |
| 49 | 49 |
YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value", |
| inputs/NY/Specimen/test.xml.ref | ||
|---|---|---|
| 128 | 128 |
<taxonomicname>$ScientificName</taxonomicname> |
| 129 | 129 |
<taxonomicnamewithauthor> |
| 130 | 130 |
<_join_words> |
| 131 |
<1>$ScientificName</1> |
|
| 131 |
<1> |
|
| 132 |
<_alt> |
|
| 133 |
<1>$ScientificName</1> |
|
| 134 |
<2> |
|
| 135 |
<_join_words> |
|
| 136 |
<1>$Family</1> |
|
| 137 |
<2>$Genus</2> |
|
| 138 |
<3>$Species</3> |
|
| 139 |
<4>$Subspecies</4> |
|
| 140 |
</_join_words> |
|
| 141 |
</2> |
|
| 142 |
</_alt> |
|
| 143 |
</1> |
|
| 132 | 144 |
<2>$ScientificNameAuthor</2> |
| 133 | 145 |
</_join_words> |
| 134 | 146 |
</taxonomicnamewithauthor> |
| inputs/Madidi/Organism/VegBIEN.csv | ||
|---|---|---|
| 37 | 37 |
Genera,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/genus, |
| 38 | 38 |
Specific epithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/species, |
| 39 | 39 |
Species and morphotypes,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicname,"Contains less than ""Specie+autor""" |
| 40 |
Specie+autor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/1,
|
|
| 41 |
Species and morphotypes,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/1,"Contains less than ""Specie+autor"""
|
|
| 42 |
Family (revised),/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/1,
|
|
| 43 |
Genera,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/2,
|
|
| 44 |
Specific epithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/3,
|
|
| 45 |
Autor (revised),/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/2,
|
|
| 40 |
Specie+autor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/1,
|
|
| 41 |
Species and morphotypes,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/1,"Contains less than ""Specie+autor"""
|
|
| 42 |
Family (revised),/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/1,
|
|
| 43 |
Genera,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/2,
|
|
| 44 |
Specific epithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/3,
|
|
| 45 |
Autor (revised),/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/2,
|
|
| 46 | 46 |
Qualifier,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/taxonfit, |
| 47 | 47 |
Field family,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/family, |
| 48 | 48 |
Field name,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/genus,Often = Genera |
| 49 |
Field family,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/1,
|
|
| 50 |
Field name,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/2,Often = Genera
|
|
| 49 |
Field family,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/1,
|
|
| 50 |
Field name,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/2,Often = Genera
|
|
| 51 | 51 |
Index collector,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
| 52 | 52 |
Specimen,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then", |
| 53 | 53 |
Basal area,,"** No join mapping for *Basal area ** Would be basalDiameter, but need formula to translate" |
| inputs/Madidi/Organism/test.xml.ref | ||
|---|---|---|
| 75 | 75 |
<genus>$Genera</genus> |
| 76 | 76 |
<species>$Specific epithet</species> |
| 77 | 77 |
<taxonomicname>$Species and morphotypes</taxonomicname> |
| 78 |
<taxonomicnamewithauthor>$Specie+autor</taxonomicnamewithauthor> |
|
| 78 |
<taxonomicnamewithauthor> |
|
| 79 |
<_alt> |
|
| 80 |
<1>$Specie+autor</1> |
|
| 81 |
<2> |
|
| 82 |
<_join_words> |
|
| 83 |
<1> |
|
| 84 |
<_alt> |
|
| 85 |
<1>$Species and morphotypes</1> |
|
| 86 |
<2> |
|
| 87 |
<_join_words> |
|
| 88 |
<1>$Family (revised)</1> |
|
| 89 |
<2>$Genera</2> |
|
| 90 |
<3>$Specific epithet</3> |
|
| 91 |
</_join_words> |
|
| 92 |
</2> |
|
| 93 |
</_alt> |
|
| 94 |
</1> |
|
| 95 |
<2>$Autor (revised)</2> |
|
| 96 |
</_join_words> |
|
| 97 |
</2> |
|
| 98 |
</_alt> |
|
| 99 |
</taxonomicnamewithauthor> |
|
| 79 | 100 |
</taxonpath> |
| 80 | 101 |
</taxonpath_id> |
| 81 | 102 |
<taxonfit>$Qualifier</taxonfit> |
| inputs/UNCC/Specimen/VegBIEN.csv | ||
|---|---|---|
| 50 | 50 |
infrarank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/subspecies/_alt/2/_join_words/1/_alt/2, |
| 51 | 51 |
infraname,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/subspecies/_alt/2/_join_words/2, |
| 52 | 52 |
SciName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicname, |
| 53 |
SciName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/1,
|
|
| 54 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/1,
|
|
| 55 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/2,
|
|
| 56 |
species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/3,
|
|
| 57 |
usdaRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/5/_join_words/1/_alt/1,
|
|
| 58 |
infrarank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/5/_join_words/1/_alt/2,
|
|
| 59 |
infraname,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/5/_join_words/2,
|
|
| 60 |
authors,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/2,
|
|
| 53 |
SciName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/1,
|
|
| 54 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/1,
|
|
| 55 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/2,
|
|
| 56 |
species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/3,
|
|
| 57 |
usdaRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_alt/1,
|
|
| 58 |
infrarank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_alt/2,
|
|
| 59 |
infraname,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2,
|
|
| 60 |
authors,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/2,
|
|
| 61 | 61 |
collector,/location/locationevent/taxonoccurrence/verbatimcollectorname/_join/1, |
| 62 | 62 |
collector1,/location/locationevent/taxonoccurrence/verbatimcollectorname/_join/2, |
| 63 | 63 |
collector2,/location/locationevent/taxonoccurrence/verbatimcollectorname/_join/3, |
| inputs/UNCC/Specimen/test.xml.ref | ||
|---|---|---|
| 91 | 91 |
<taxonomicname>$SciName</taxonomicname> |
| 92 | 92 |
<taxonomicnamewithauthor> |
| 93 | 93 |
<_join_words> |
| 94 |
<1>$SciName</1> |
|
| 94 |
<1> |
|
| 95 |
<_alt> |
|
| 96 |
<1>$SciName</1> |
|
| 97 |
<2> |
|
| 98 |
<_join_words> |
|
| 99 |
<1>$family</1> |
|
| 100 |
<2>$genus</2> |
|
| 101 |
<3>$species</3> |
|
| 102 |
<5> |
|
| 103 |
<_join_words> |
|
| 104 |
<1> |
|
| 105 |
<_alt> |
|
| 106 |
<1>$usdaRank</1> |
|
| 107 |
<2>$infrarank</2> |
|
| 108 |
</_alt> |
|
| 109 |
</1> |
|
| 110 |
<2>$infraname</2> |
|
| 111 |
</_join_words> |
|
| 112 |
</5> |
|
| 113 |
</_join_words> |
|
| 114 |
</2> |
|
| 115 |
</_alt> |
|
| 116 |
</1> |
|
| 95 | 117 |
<2>$authors</2> |
| 96 | 118 |
</_join_words> |
| 97 | 119 |
</taxonomicnamewithauthor> |
| inputs/ACAD/Specimen/VegBIEN.csv | ||
|---|---|---|
| 32 | 32 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/species, |
| 33 | 33 |
taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/subspecies/_alt/2/_join_words/1, |
| 34 | 34 |
infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/subspecies/_alt/2/_join_words/2, |
| 35 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/1,
|
|
| 36 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/1,
|
|
| 37 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/2,
|
|
| 38 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/3,
|
|
| 39 |
taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/5/_join_words/1,
|
|
| 40 |
infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/5/_join_words/2,
|
|
| 41 |
scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/2,
|
|
| 35 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/1,
|
|
| 36 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/1,
|
|
| 37 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/2,
|
|
| 38 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/3,
|
|
| 39 |
taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1,
|
|
| 40 |
infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2,
|
|
| 41 |
scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/2,
|
|
| 42 | 42 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_*/date/_dateRangeStart/value, |
| 43 | 43 |
recordedBy,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
| 44 | 44 |
catalogNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then", |
| inputs/ACAD/Specimen/test.xml.ref | ||
|---|---|---|
| 90 | 90 |
<2>$infraspecificEpithet</2> |
| 91 | 91 |
</_join_words> |
| 92 | 92 |
</subspecies> |
| 93 |
<taxonomicnamewithauthor>$scientificName</taxonomicnamewithauthor> |
|
| 93 |
<taxonomicnamewithauthor> |
|
| 94 |
<_alt> |
|
| 95 |
<1>$scientificName</1> |
|
| 96 |
<2> |
|
| 97 |
<_join_words> |
|
| 98 |
<1> |
|
| 99 |
<_join_words> |
|
| 100 |
<1>$family</1> |
|
| 101 |
<2>$genus</2> |
|
| 102 |
<3>$specificEpithet</3> |
|
| 103 |
<5> |
|
| 104 |
<_join_words> |
|
| 105 |
<1>$taxonRank</1> |
|
| 106 |
<2>$infraspecificEpithet</2> |
|
| 107 |
</_join_words> |
|
| 108 |
</5> |
|
| 109 |
</_join_words> |
|
| 110 |
</1> |
|
| 111 |
<2>$scientificNameAuthorship</2> |
|
| 112 |
</_join_words> |
|
| 113 |
</2> |
|
| 114 |
</_alt> |
|
| 115 |
</taxonomicnamewithauthor> |
|
| 94 | 116 |
</taxonpath> |
| 95 | 117 |
</taxonpath_id> |
| 96 | 118 |
<determinationdate><_date><date><_dateRangeStart><value>$dateIdentified</value></_dateRangeStart></date></_date></determinationdate> |
| inputs/SALVIAS-CSV/Organism/VegBIEN.csv | ||
|---|---|---|
| 70 | 70 |
specific_epithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/species, |
| 71 | 71 |
infra_rank_1,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/subspecies/_alt/2/_join_words/1, |
| 72 | 72 |
infra_ep_1,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/subspecies/_alt/2/_join_words/2, |
| 73 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/1,
|
|
| 74 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/2,
|
|
| 75 |
specific_epithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/3,
|
|
| 76 |
infra_rank_1,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/5/_join_words/1,
|
|
| 77 |
infra_ep_1,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/5/_join_words/2,
|
|
| 78 |
specific_authority,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/2,Brad: This is the author of the scientificName.
|
|
| 73 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/1,
|
|
| 74 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/2,
|
|
| 75 |
specific_epithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/3,
|
|
| 76 |
infra_rank_1,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1,
|
|
| 77 |
infra_ep_1,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2,
|
|
| 78 |
specific_authority,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/2,Brad: This is the author of the scientificName.
|
|
| 79 | 79 |
cf_aff,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/taxonfit,"Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank." |
| 80 | 80 |
orig_family,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/family,Brad: OMIT |
| 81 | 81 |
orig_species,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/species,Brad: OMIT |
| 82 |
orig_family,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/1,Brad: OMIT
|
|
| 83 |
orig_species,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/3,Brad: OMIT
|
|
| 82 |
orig_family,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/1,Brad: OMIT
|
|
| 83 |
orig_species,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/3,Brad: OMIT
|
|
| 84 | 84 |
coll_firstname,/location/locationevent/taxonoccurrence/verbatimcollectorname/_join_words/1,Brad: See comment above |
| 85 | 85 |
coll_lastname,/location/locationevent/taxonoccurrence/verbatimcollectorname/_join_words/2,"Brad: This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick." |
| 86 | 86 |
det_type,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen." |
| inputs/CVS/Organism/VegBIEN.csv | ||
|---|---|---|
| 10 | 10 |
%cover,/location/locationevent/taxonoccurrence/aggregateoccurrence/cover_fraction/_percent_to_fraction/value, |
| 11 | 11 |
currentTaxonName sec Weakley 2006,/location/locationevent/taxonoccurrence/authortaxoncode/_first/2/_first/3, |
| 12 | 12 |
currentTaxonName sec Weakley 2006,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicname, |
| 13 |
currentTaxonName sec Weakley 2006,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/1,
|
|
| 13 |
currentTaxonName sec Weakley 2006,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/1,
|
|
| 14 | 14 |
county,/location/locationplace/*_id/placepath/county, |
| 15 | 15 |
state,/location/locationplace/*_id/placepath/stateprovince, |
| 16 | 16 |
confidentialityStatus,,** No join mapping for *confidentialityStatus ** |
| inputs/REMIB/Specimen/VegBIEN.csv | ||
|---|---|---|
| 36 | 36 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/family, |
| 37 | 37 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/genus, |
| 38 | 38 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/species, |
| 39 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/1,
|
|
| 40 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/2,
|
|
| 41 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/3,
|
|
| 39 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/1,
|
|
| 40 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/2,
|
|
| 41 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/3,
|
|
| 42 | 42 |
collector,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
| 43 | 43 |
accession_number,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then","Not globally unique, only (usually) unique within the institution providing the data (""acronym""). Note that there are nevertheless 11,869 rows where an accession_number appears multiple times within the same institution. [1]
|
| 44 | 44 |
|
| inputs/CTFS/StemObservation/VegBIEN.csv | ||
|---|---|---|
| 25 | 25 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/genus, |
| 26 | 26 |
SpeciesName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/species, |
| 27 | 27 |
SubSpeciesName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/subspecies/_alt/1, |
| 28 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/1,
|
|
| 29 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/2,
|
|
| 30 |
SpeciesName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/3,
|
|
| 31 |
SubSpeciesName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/4,
|
|
| 32 |
SpeciesAuthority,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/2,
|
|
| 28 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/1,
|
|
| 29 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/2,
|
|
| 30 |
SpeciesName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/3,
|
|
| 31 |
SubSpeciesName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/4,
|
|
| 32 |
SpeciesAuthority,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/2,
|
|
| 33 | 33 |
Description,,** No join mapping for *Description ** |
| 34 | 34 |
ExactDate,,** No join mapping for *ExactDate ** |
| 35 | 35 |
FamilyID,,** No join mapping for *FamilyID ** |
| inputs/CTFS/TaxonOccurrence/VegBIEN.csv | ||
|---|---|---|
| 12 | 12 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/genus, |
| 13 | 13 |
SpeciesName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/species, |
| 14 | 14 |
SubSpeciesName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/subspecies/_alt/1, |
| 15 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/1,
|
|
| 16 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/2,
|
|
| 17 |
SpeciesName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/3,
|
|
| 18 |
SubSpeciesName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/4,
|
|
| 15 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/1,
|
|
| 16 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/2,
|
|
| 17 |
SpeciesName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/3,
|
|
| 18 |
SubSpeciesName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/4,
|
|
| 19 | 19 |
Description,,** No join mapping for *Description ** |
| 20 | 20 |
FamilyID,,** No join mapping for *FamilyID ** |
| 21 | 21 |
FieldFamily,,** No join mapping for *FieldFamily ** |
| inputs/FIA/Organism/VegBIEN.csv | ||
|---|---|---|
| 16 | 16 |
TreeTag,"/location/locationevent/taxonoccurrence/authortaxoncode/_first/1/_first/2/_if[@name=""if is organism""]/then", |
| 17 | 17 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/genus, |
| 18 | 18 |
SpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/species, |
| 19 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/2,
|
|
| 20 |
SpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/3,
|
|
| 19 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/2,
|
|
| 20 |
SpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/3,
|
|
| 21 | 21 |
County,/location/locationplace/*_id/placepath/county, |
| 22 | 22 |
StateProvince,/location/locationplace/*_id/placepath/stateprovince, |
| 23 | 23 |
HOM,,** No join mapping for *HOM ** |
| inputs/SALVIAS/plotObservations/VegBIEN.csv | ||
|---|---|---|
| 63 | 63 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/species, |
| 64 | 64 |
infra_rank_1,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/subspecies/_alt/2/_join_words/1, |
| 65 | 65 |
infra_ep_1,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/subspecies/_alt/2/_join_words/2, |
| 66 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/1,
|
|
| 67 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/2,
|
|
| 68 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/3,
|
|
| 69 |
infra_rank_1,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/5/_join_words/1,
|
|
| 70 |
infra_ep_1,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/5/_join_words/2,
|
|
| 71 |
auth,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/2,Brad: This is the author of the scientificName.
|
|
| 66 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/1,
|
|
| 67 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/2,
|
|
| 68 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/3,
|
|
| 69 |
infra_rank_1,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1,
|
|
| 70 |
infra_ep_1,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2,
|
|
| 71 |
auth,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/2,Brad: This is the author of the scientificName.
|
|
| 72 | 72 |
cfaff,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/taxonfit,"Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank." |
| 73 | 73 |
OrigFamily,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/family,Brad: OMIT |
| 74 | 74 |
OrigGenus,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/genus, |
| 75 | 75 |
OrigSpecies,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/species,Brad: OMIT |
| 76 |
OrigFamily,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/1,Brad: OMIT
|
|
| 77 |
OrigGenus,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/2,
|
|
| 78 |
OrigSpecies,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/3,Brad: OMIT
|
|
| 76 |
OrigFamily,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/1,Brad: OMIT
|
|
| 77 |
OrigGenus,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/2,
|
|
| 78 |
OrigSpecies,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/3,Brad: OMIT
|
|
| 79 | 79 |
coll_firstname,/location/locationevent/taxonoccurrence/verbatimcollectorname/_join_words/1,Brad: See comment above |
| 80 | 80 |
coll_lastname,/location/locationevent/taxonoccurrence/verbatimcollectorname/_join_words/2,"Brad: This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick." |
| 81 | 81 |
DetType,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen." |
| inputs/.TNRS/tnrs/VegBIEN.csv | ||
|---|---|---|
| 4 | 4 |
Accepted_name_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/family, |
| 5 | 5 |
Accepted_name_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/subspecies/_alt/2/_join_words/1, |
| 6 | 6 |
Accepted_name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicname, |
| 7 |
Accepted_name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/1,
|
|
| 8 |
Accepted_name_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/1,
|
|
| 9 |
Accepted_name_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/5/_join_words/1,
|
|
| 10 |
Accepted_name_author,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/2,
|
|
| 7 |
Accepted_name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/1,
|
|
| 8 |
Accepted_name_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/1,
|
|
| 9 |
Accepted_name_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1,
|
|
| 10 |
Accepted_name_author,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/2,
|
|
| 11 | 11 |
Name_submitted,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonpath:[@fkey=canon_taxonpath_id]/taxonomicnamewithauthor, |
| 12 | 12 |
Accepted_name_lsid,,** No non-empty join mapping for OMIT ** |
| 13 | 13 |
Accepted_name_species,,** No non-empty join mapping for OMIT ** Also contains genus. Omitted because Accepted_name contains more info. |
| inputs/.TNRS/tnrs/test.xml.ref | ||
|---|---|---|
| 16 | 16 |
<taxonomicname>$Accepted_name</taxonomicname> |
| 17 | 17 |
<taxonomicnamewithauthor> |
| 18 | 18 |
<_join_words> |
| 19 |
<1>$Accepted_name</1> |
|
| 19 |
<1> |
|
| 20 |
<_alt> |
|
| 21 |
<1>$Accepted_name</1> |
|
| 22 |
<2> |
|
| 23 |
<_join_words> |
|
| 24 |
<1>$Accepted_name_family</1> |
|
| 25 |
<5>$Accepted_name_rank</5> |
|
| 26 |
</_join_words> |
|
| 27 |
</2> |
|
| 28 |
</_alt> |
|
| 29 |
</1> |
|
| 20 | 30 |
<2>$Accepted_name_author</2> |
| 21 | 31 |
</_join_words> |
| 22 | 32 |
</taxonomicnamewithauthor> |
| inputs/U/Specimen/VegBIEN.csv | ||
|---|---|---|
| 18 | 18 |
Detby,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/surname/_namePart/last, |
| 19 | 19 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/family, |
| 20 | 20 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/genus, |
| 21 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/1,
|
|
| 22 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/2,
|
|
| 21 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/1,
|
|
| 22 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/2,
|
|
| 23 | 23 |
Detyy,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value", |
| 24 | 24 |
cf,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/taxonfit, |
| 25 | 25 |
Collector,/location/locationevent/taxonoccurrence/verbatimcollectorname/_join/1, |
| inputs/ARIZ/Specimen/VegBIEN.csv | ||
|---|---|---|
| 41 | 41 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/species, |
| 42 | 42 |
Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/subspecies/_alt/1, |
| 43 | 43 |
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicname, |
| 44 |
ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/1,Contains the binomial in addition to the authority
|
|
| 45 |
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/1,
|
|
| 46 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/1,
|
|
| 47 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/2,
|
|
| 48 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/3,
|
|
| 49 |
Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/4,
|
|
| 44 |
ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/1,Contains the binomial in addition to the authority
|
|
| 45 |
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/1,
|
|
| 46 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/1,
|
|
| 47 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/2,
|
|
| 48 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/3,
|
|
| 49 |
Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/4,
|
|
| 50 | 50 |
DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value", |
| 51 | 51 |
MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value", |
| 52 | 52 |
YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value", |
| inputs/ARIZ/Specimen/test.xml.ref | ||
|---|---|---|
| 125 | 125 |
<species>$Species</species> |
| 126 | 126 |
<subspecies>$Subspecies</subspecies> |
| 127 | 127 |
<taxonomicname>$ScientificName</taxonomicname> |
| 128 |
<taxonomicnamewithauthor>$ScientificNameAuthor</taxonomicnamewithauthor> |
|
| 128 |
<taxonomicnamewithauthor> |
|
| 129 |
<_alt> |
|
| 130 |
<1>$ScientificNameAuthor</1> |
|
| 131 |
<2> |
|
| 132 |
<_alt> |
|
| 133 |
<1>$ScientificName</1> |
|
| 134 |
<2> |
|
| 135 |
<_join_words> |
|
| 136 |
<1>$Family</1> |
|
| 137 |
<2>$Genus</2> |
|
| 138 |
<3>$Species</3> |
|
| 139 |
<4>$Subspecies</4> |
|
| 140 |
</_join_words> |
|
| 141 |
</2> |
|
| 142 |
</_alt> |
|
| 143 |
</2> |
|
| 144 |
</_alt> |
|
| 145 |
</taxonomicnamewithauthor> |
|
| 129 | 146 |
</taxonpath> |
| 130 | 147 |
</taxonpath_id> |
| 131 | 148 |
<determinationdate> |
| inputs/GBIF/Specimen/VegBIEN.csv | ||
|---|---|---|
| 22 | 22 |
SpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/species, |
| 23 | 23 |
InfraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/subspecies/_alt/2/_join_words/2, |
| 24 | 24 |
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicname, |
| 25 |
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/1,
|
|
| 26 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/1,
|
|
| 27 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/2,
|
|
| 28 |
SpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/3,
|
|
| 29 |
InfraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/5/_join_words/2,
|
|
| 30 |
AuthorOfScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/2,
|
|
| 25 |
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/1,
|
|
| 26 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/1,
|
|
| 27 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/2,
|
|
| 28 |
SpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/3,
|
|
| 29 |
InfraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2,
|
|
| 30 |
AuthorOfScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/2,
|
|
| 31 | 31 |
GBIFFamilyOriginal,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/family, |
| 32 | 32 |
GBIFGenusOriginal,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/genus, |
| 33 | 33 |
ScientificNameOriginal,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicname, |
| 34 |
ScientificNameOriginal,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/1,
|
|
| 35 |
GBIFFamilyOriginal,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/1,
|
|
| 36 |
GBIFGenusOriginal,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/2,
|
|
| 34 |
ScientificNameOriginal,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/1,
|
|
| 35 |
GBIFFamilyOriginal,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/1,
|
|
| 36 |
GBIFGenusOriginal,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/2,
|
|
| 37 | 37 |
Collector,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
| 38 | 38 |
CatalogNO,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then", |
| 39 | 39 |
Locality,/location/locationnarrative/_merge/1, |
| inputs/NCU-NCSC/Specimen/VegBIEN.csv | ||
|---|---|---|
| 15 | 15 |
Cultivated?,/location/locationevent/taxonoccurrence/iscultivated/_alt/1, |
| 16 | 16 |
Accession Number,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/3, |
| 17 | 17 |
Full Taxon Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicname, |
| 18 |
Full Taxon Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/1,
|
|
| 18 |
Full Taxon Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/1,
|
|
| 19 | 19 |
Barcode,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then", |
| 20 | 20 |
Country,/location/locationplace/*_id/placepath/country, |
| 21 | 21 |
County,/location/locationplace/*_id/placepath/county, |
| inputs/SpeciesLink/Specimen/test.xml.ref | ||
|---|---|---|
| 350 | 350 |
<_join_words> |
| 351 | 351 |
<1> |
| 352 | 352 |
<_alt> |
| 353 |
<0>$conceptual_darwin_2003_1_0_ScientificName</0> |
|
| 354 |
<1>$dwc_dwcore_ScientificName</1> |
|
| 355 |
<2>$dwc_terms_scientificName</2> |
|
| 353 |
<1> |
|
| 354 |
<_alt> |
|
| 355 |
<0>$conceptual_darwin_2003_1_0_ScientificName</0> |
|
| 356 |
<1>$dwc_dwcore_ScientificName</1> |
|
| 357 |
<2>$dwc_terms_scientificName</2> |
|
| 358 |
</_alt> |
|
| 359 |
</1> |
|
| 360 |
<2> |
|
| 361 |
<_join_words> |
|
| 362 |
<1> |
|
| 363 |
<_alt> |
|
| 364 |
<0>$conceptual_darwin_2003_1_0_Family</0> |
|
| 365 |
<1>$dwc_dwcore_Family</1> |
|
| 366 |
<2>$dwc_terms_family</2> |
|
| 367 |
</_alt> |
|
| 368 |
</1> |
|
| 369 |
<2> |
|
| 370 |
<_alt> |
|
| 371 |
<0>$conceptual_darwin_2003_1_0_Genus</0> |
|
| 372 |
<1>$dwc_dwcore_Genus</1> |
|
| 373 |
<2>$dwc_terms_genus</2> |
|
| 374 |
</_alt> |
|
| 375 |
</2> |
|
| 376 |
<3> |
|
| 377 |
<_alt> |
|
| 378 |
<0>$conceptual_darwin_2003_1_0_Species</0> |
|
| 379 |
<1>$dwc_dwcore_SpecificEpithet</1> |
|
| 380 |
<2>$dwc_terms_specificEpithet</2> |
|
| 381 |
</_alt> |
|
| 382 |
</3> |
|
| 383 |
<4>$conceptual_darwin_2003_1_0_Subspecies</4> |
|
| 384 |
<5> |
|
| 385 |
<_alt> |
|
| 386 |
<0>$dwc_dwcore_InfraspecificEpithet</0> |
|
| 387 |
<1>$dwc_terms_infraspecificEpithet</1> |
|
| 388 |
</_alt> |
|
| 389 |
</5> |
|
| 390 |
</_join_words> |
|
| 391 |
</2> |
|
| 356 | 392 |
</_alt> |
| 357 | 393 |
</1> |
| 358 | 394 |
<2> |
| inputs/MO/Specimen/test.xml.ref | ||
|---|---|---|
| 97 | 97 |
<taxonomicname>$ScientificName</taxonomicname> |
| 98 | 98 |
<taxonomicnamewithauthor> |
| 99 | 99 |
<_join_words> |
| 100 |
<1>$ScientificName</1> |
|
| 100 |
<1> |
|
| 101 |
<_alt> |
|
| 102 |
<1>$ScientificName</1> |
|
| 103 |
<2> |
|
| 104 |
<_join_words> |
|
| 105 |
<1>$family</1> |
|
| 106 |
<2>$genus</2> |
|
| 107 |
<3>$species</3> |
|
| 108 |
<4>$Subspecies</4> |
|
| 109 |
</_join_words> |
|
| 110 |
</2> |
|
| 111 |
</_alt> |
|
| 112 |
</1> |
|
| 101 | 113 |
<2>$ScientificNameAuthor</2> |
| 102 | 114 |
</_join_words> |
| 103 | 115 |
</taxonomicnamewithauthor> |
| inputs/QMOR/Specimen/VegBIEN.csv | ||
|---|---|---|
| 40 | 40 |
taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/subspecies/_alt/2/_join_words/1, |
| 41 | 41 |
infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/subspecies/_alt/2/_join_words/2, |
| 42 | 42 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicname, |
| 43 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/1,
|
|
| 44 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/1,
|
|
| 45 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/2,
|
|
| 46 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/3,
|
|
| 47 |
taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/5/_join_words/1,
|
|
| 48 |
infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/1/_first/2/_join_words/5/_join_words/2,
|
|
| 49 |
scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_first/2/_join_words/2,
|
|
| 43 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/1,
|
|
| 44 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/1,
|
|
| 45 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/2,
|
|
| 46 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/3,
|
|
| 47 |
taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1,
|
|
| 48 |
infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2,
|
|
| 49 |
scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/2,
|
|
| 50 | 50 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_*/date/_dateRangeStart/value, |
| 51 | 51 |
identificationQualifier,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/taxonfit, |
| 52 | 52 |
recordedBy,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: taxonomic terms: Changed _first to _alt because some datasources have NULL values in scientificNameWithAuthorship or scientificName, so it can't just be used in place of the joined-together taxonomic ranks