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| Revision:
Name Size Revision Age Author Comment
  _archive 1598 over 12 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 4751 about 12 years Aaron Marcuse-Kubitza backups/Makefile: Backups: Full DB: Specify the...
  bin 5055 about 12 years Aaron Marcuse-Kubitza import_all: Added import of .TNRS datasource, w...
  config 272 almost 13 years Aaron Marcuse-Kubitza Moved bien_password to new config dir
  inputs 5076 about 12 years Aaron Marcuse-Kubitza schemas/vegbien.sql: taxonpath: taxonpath_uniqu...
  lib 5075 about 12 years Aaron Marcuse-Kubitza db_xml.py: put(): Added _alt optimization that ...
  mappings 5072 about 12 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: taxonomic terms: ...
  schemas 5076 about 12 years Aaron Marcuse-Kubitza schemas/vegbien.sql: taxonpath: taxonpath_uniqu...
  to_do 4524 about 12 years Aaron Marcuse-Kubitza to_do/timeline.doc: Updated to reflect addition...
  validation 4523 about 12 years Aaron Marcuse-Kubitza Added validation/
Makefile 9.99 KB 4752 about 12 years Aaron Marcuse-Kubitza root Makefile: PostgreSQL: postgres-Linux: Adde...
README.TXT 11.3 KB 5040 about 12 years Aaron Marcuse-Kubitza README.TXT: Data import: Starting column-based ...
map 1.28 KB 4981 about 12 years Aaron Marcuse-Kubitza root map: Fixed custom public schema override t...
new_terms.csv 30.4 KB 4887 about 12 years Aaron Marcuse-Kubitza Regenerated root unmapped_terms.csv, new_terms.csv
unmapped_terms.csv 5.8 KB 4887 about 12 years Aaron Marcuse-Kubitza Regenerated root unmapped_terms.csv, new_terms.csv

Latest revisions

# Date Author Comment
5076 09/27/2012 11:10 AM Aaron Marcuse-Kubitza

schemas/vegbien.sql: taxonpath: taxonpath_unique_within_datasource_by_name unique index: Just do duplicate elimination on the taxonomicnamewithauthor, since that is now a required field and is generated by concatenating all the other fields. Note that the inserted row counts change slightly because the concatenation makes some names equal that are split among the fields differently, such as when the genus is included in the species field.

5075 09/27/2012 10:51 AM Aaron Marcuse-Kubitza

db_xml.py: put(): Added _alt optimization that just returns the first arg if it's non-NULL

5074 09/27/2012 10:49 AM Aaron Marcuse-Kubitza

sql_gen.py: Added is_nullable()

5073 09/27/2012 10:49 AM Aaron Marcuse-Kubitza

schemas/vegbien.sql: taxonpath.taxonomicnamewithauthor: Made it NOT NULL, so that all taxonpaths would have a concatenated name to feed to TNRS

5072 09/27/2012 10:37 AM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: taxonomic terms: Changed _first to _alt because some datasources have NULL values in scientificNameWithAuthorship or scientificName, so it can't just be used in place of the joined-together taxonomic ranks

5071 09/27/2012 10:19 AM Aaron Marcuse-Kubitza

db_xml.py: put(): Parse input columns and process values in separate loops, so that structural XML function optimization code can be inserted between them

5070 09/27/2012 10:12 AM Aaron Marcuse-Kubitza

sql_io.py: put_table(): Removed comment that can support in_tables of any fixed-size iterable type, because the iterable must be ordered so that the first table can be treated specially

5069 09/27/2012 10:09 AM Aaron Marcuse-Kubitza

sql_io.py: put_table(): Support in_tables of any fixed-size iterable type

5068 09/27/2012 09:13 AM Aaron Marcuse-Kubitza

mappings/Veg+-VegCore.csv: cationExchangeCapacity->cationExchangeCapacity_cmol_kg mapping: Removed ? prefix because a mapping to only one set of units is unambiguous (if additional units for cationExchangeCapacity are found, this will become an ambiguous mapping). Note that canon automatically removes punctuation from VegCore terms, so this mapping would previously have had the ? prefix autoremoved anyway (both in inputs/*/*/map.csv and recently also in Veg+-VegCore.csv).

5067 09/27/2012 09:06 AM Aaron Marcuse-Kubitza

mappings/Makefile: .Veg+-VegCore.csv.last_cleanup: Translate VegCore terms using itself so that any mapping to another Veg+ term automatically becomes a mapping to a VegCore term. .VegX-VegCore.csv.last_cleanup: Translate VegCore terms using Veg+-VegCore.csv to keep the terms up to date.

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