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Name Size Revision Age Author Comment
  _archive 1598 almost 13 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 4751 over 12 years Aaron Marcuse-Kubitza backups/Makefile: Backups: Full DB: Specify the...
  bin 5111 over 12 years Aaron Marcuse-Kubitza import_all: Clean up any new TNRS.tnrs entries ...
  config 272 about 13 years Aaron Marcuse-Kubitza Moved bien_password to new config dir
  inputs 5110 over 12 years Aaron Marcuse-Kubitza inputs/.TNRS/tnrs/: Create using datasource sch...
  lib 5108 over 12 years Aaron Marcuse-Kubitza tnrs.py: repeated_tnrs_request(): Just retry th...
  mappings 5117 over 12 years Aaron Marcuse-Kubitza mappings/VegCore.csv: originalTaxonRank: Added ...
  schemas 5078 over 12 years Aaron Marcuse-Kubitza Regenerated vegbien.ERD exports
  to_do 4524 over 12 years Aaron Marcuse-Kubitza to_do/timeline.doc: Updated to reflect addition...
  validation 4523 over 12 years Aaron Marcuse-Kubitza Added validation/
Makefile 9.99 KB 4752 over 12 years Aaron Marcuse-Kubitza root Makefile: PostgreSQL: postgres-Linux: Adde...
README.TXT 11.3 KB 5040 over 12 years Aaron Marcuse-Kubitza README.TXT: Data import: Starting column-based ...
map 1.28 KB 4981 over 12 years Aaron Marcuse-Kubitza root map: Fixed custom public schema override t...
new_terms.csv 30.4 KB 4887 over 12 years Aaron Marcuse-Kubitza Regenerated root unmapped_terms.csv, new_terms.csv
unmapped_terms.csv 5.8 KB 4887 over 12 years Aaron Marcuse-Kubitza Regenerated root unmapped_terms.csv, new_terms.csv

Latest revisions

# Date Author Comment
5117 09/28/2012 12:15 PM Aaron Marcuse-Kubitza

mappings/VegCore.csv: originalTaxonRank: Added source of the original* prefix
5116 09/28/2012 12:14 PM Aaron Marcuse-Kubitza

mappings/VegCore.csv: acceptedTaxonRank: Added source of the accepted prefix
5115 09/28/2012 12:12 PM Aaron Marcuse-Kubitza

mappings/VegCore.csv: accepted* taxonomic terms: Fixed sources of the accepted prefix to use acceptedNameUsage, not acceptedNameUsageID
5114 09/28/2012 12:09 PM Aaron Marcuse-Kubitza

mappings/VegCore.csv: original* taxonomic terms: Source the original prefix to DwC originalNameUsage, which is a more offical source than SALVIAS orig_species
5113 09/28/2012 12:09 PM Aaron Marcuse-Kubitza

mappings/VegCore.csv: original* taxonomic terms: Source the original prefix to DwC originalNameUsage, which is a more offical source than SALVIAS orig_species
5112 09/28/2012 11:56 AM Aaron Marcuse-Kubitza

mappings/VegCore.csv: Added accepted* taxonomic terms to store the scrubbed name
5111 09/28/2012 11:42 AM Aaron Marcuse-Kubitza

import_all: Clean up any new TNRS.tnrs entries before importing the TNRS data
5110 09/28/2012 11:36 AM Aaron Marcuse-Kubitza

inputs/.TNRS/tnrs/: Create using datasource schema.sql file instead of text header and postprocess.sql, for clarity and to enable using `make inputs/.TNRS/tnrs/install` to clean up the tnrs entries populated by tnrs_db
5109 09/28/2012 11:21 AM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: Don't combine taxonRank with infraspecificEpithet if there is no infraspecificEpithet, because the taxonRank is only the infraspecificEpithet's prefix when there is an actual infraspecificEpithet. Often, taxonRank contains values like "genus" or "species" which cannot be used for this purpose.
5108 09/28/2012 10:54 AM Aaron Marcuse-Kubitza

tnrs.py: repeated_tnrs_request(): Just retry the request once with with debug turned on, to avoid cluttering the log output with the verbose debug info of multiple failed requests if the error is not resolved on retry

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