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Name Size Revision Age Author Comment
  _archive 1598 almost 13 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 4751 over 12 years Aaron Marcuse-Kubitza backups/Makefile: Backups: Full DB: Specify the...
  bin 5324 about 12 years Aaron Marcuse-Kubitza tnrs_db: Moved "Processing # taxonconcepts" log...
  config 272 about 13 years Aaron Marcuse-Kubitza Moved bien_password to new config dir
  inputs 5339 about 12 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: verbatim* taxonco...
  lib 5340 about 12 years Aaron Marcuse-Kubitza sql.py: simplify_expr(): Combined replacements ...
  mappings 5339 about 12 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: verbatim* taxonco...
  schemas 5328 about 12 years Aaron Marcuse-Kubitza lib/PostgreSQL-MySQL.csv: COMMENT statement: Fi...
  to_do 4524 over 12 years Aaron Marcuse-Kubitza to_do/timeline.doc: Updated to reflect addition...
  validation 4523 over 12 years Aaron Marcuse-Kubitza Added validation/
Makefile 9.99 KB 4752 over 12 years Aaron Marcuse-Kubitza root Makefile: PostgreSQL: postgres-Linux: Adde...
README.TXT 13.1 KB 5321 about 12 years Aaron Marcuse-Kubitza README.TXT: Schema changes: files to update wit...
map 989 Bytes 5158 about 12 years Aaron Marcuse-Kubitza root map: Removed no longer needed public schem...
new_terms.csv 30.4 KB 4887 over 12 years Aaron Marcuse-Kubitza Regenerated root unmapped_terms.csv, new_terms.csv
unmapped_terms.csv 5.8 KB 4887 over 12 years Aaron Marcuse-Kubitza Regenerated root unmapped_terms.csv, new_terms.csv

Latest revisions

# Date Author Comment
5340 10/09/2012 10:31 PM Aaron Marcuse-Kubitza

sql.py: simplify_expr(): Combined replacements of bool_re+' OR ' with the value in either order into one replacement

5339 10/09/2012 10:27 PM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: verbatim* taxonconcept: Don't store Name_submitted in taxonomicnamewithauthor in addition to identifyingtaxonomicname, because the fields other than identifyingtaxonomicname are meant to store parsed values rather than raw, unscrubbed values and TNRS does not directly provide a concatenated taxonomic name with author

5338 10/09/2012 10:23 PM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: verbatim* taxonconcept: Don't create hierarchy of parent taxonconcepts, because the parsed names (rather than the names for the matched taxonconcept) are from the input taxonomic name, rather than from the official tree of life used by TNRS. Otherwise, if a taxonomic name provides e.g. no family (common), a separate genus taxonconcept would have been created with no parent_id, which would not compare equal to the matched taxonconcept's genus with a parent_id. Continue to store the parsed family, genus, species in the family, genus, species cached fields, because the parsed family is often different from the matched taxonconcept's family when e.g. no family is provided in the taxonomic name.

5337 10/09/2012 10:16 PM Aaron Marcuse-Kubitza

sql.py: Renamed table_cols() to table_col_names() for clarity, because it does not return sql_gen.Col objects

5336 10/09/2012 10:12 PM Aaron Marcuse-Kubitza

inputs/.TNRS/tnrs/test.xml.ref: Accepted new inserted row count. The change is most likely from several revisions back, but the cause of the change is unknown (it is not due to the updated TNRS.tnrs table, which is still sorted with the same rows first).

5335 10/09/2012 09:09 PM Aaron Marcuse-Kubitza

sql_gen.py: is_text_col(): Use new is_text_type()

5334 10/09/2012 09:09 PM Aaron Marcuse-Kubitza

sql_gen.py: Added is_text_type()

5333 10/09/2012 09:05 PM Aaron Marcuse-Kubitza

sql_gen.py: ensure_not_null(): Documented that NULL has no type, hence the NoUnderlyingTableException being re-raised

5332 10/09/2012 09:04 PM Aaron Marcuse-Kubitza

sql_gen.py: ensure_not_null(): Just store the column type in col_type, instead of storing typed_col and using typed_col.type, now that other info in typed_col is no longer needed

5331 10/09/2012 09:02 PM Aaron Marcuse-Kubitza

sql_gen.py: ensure_not_null(): Use is_nullable() instead of determining nullability itself, for clarity

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