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Revision 5929

Added by Aaron Marcuse-Kubitza about 12 years ago

mappings/VegCore-VegBIEN.csv: Mapped taxonIsCanonical

View differences:

inputs/.TNRS/tnrs_accepted/VegBIEN.csv
19 19 
Accepted_name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/taxonverbatim/binomial,
20 20 
Accepted_name_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/taxonverbatim/family/_nullIf:[null=Unknown]/value,
21 21 
Accepted_name_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/taxonverbatim/verbatimrank,
22 
:true,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/matched_label_id/_if[@name=""if is canonical name"",then=0]/cond",This table contains only accepted names (names that scrub to themselves)
22 23 
Name_matched_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/rank",
23 24 
Name_matched_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/taxonverbatim/verbatimrank",
24 25 
Specific_epithet_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
......
66 67 
Unmatched_terms,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/morphospecies/_if[@name=""if has verbatim name""]/else",
67 68 
Specific_epithet_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet,
68 69 
Name_matched_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/verbatimrank,
69 
:true,,** No join mapping for taxonIsCanonical ** This table contains only accepted names (names that scrub to themselves)
70 70 
Accepted_name_lsid,,** No join mapping for *Accepted_name_lsid **
71 71 
Accepted_name_species,,** No join mapping for *Accepted_name_species ** Also contains genus. Omitted because Accepted_name contains more info.
72 72 
Accepted_name_url,,** No join mapping for *Accepted_name_url **
inputs/.TNRS/tnrs_accepted/test.xml.ref
49 49 
                                                    </taxonlabel>
50 50 
                                                </matched_label_id>
51 51 
                                            </_taxonlabel_set_matched_label_id>
52 
                                            <matched_label_id>0</matched_label_id>
52 53 
                                            <parent_id>
53 54 
                                                <taxonlabel>
54 55 
                                                    <rank>$Name_matched_rank</rank>
inputs/.TNRS/tnrs_accepted/unmapped_terms.csv
10 10 
*Source
11 11 
*Warnings
12 12 
*Accepted_name_lsid
13 
taxonIsCanonical
mappings/VegCore-VegBIEN.csv
168 168 
yearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/creationdate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
169 169 
accordingTo,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/creator_id/_simplifyPath:[next=creator_id]/path/party/fullname/_alt/1,
170 170 
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/creator_id/_simplifyPath:[next=creator_id]/path/party/fullname/_alt/2,
171 
taxonIsCanonical,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/matched_label_id/_if[@name=""if is canonical name"",then=0]/cond",
171 172 
parentScientificNameID,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/cond/_exists",
172 173 
parentTaxonConceptID,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/cond/_exists",
173 174 
parentTaxonID,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/cond/_exists",
mappings/for_review/VegCore-VegBIEN.csv
168 168 
yearIdentified,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/*_id/taxonlabel/creationdate,
169 169 
accordingTo,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/*_id/taxonlabel/creator_id/party/fullname,
170 170 
identifiedBy,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/*_id/taxonlabel/creator_id/party/fullname,
171 
taxonIsCanonical,"//taxonlabel/matched_label_id/_if[@name=""if is canonical name"",then=0]/cond",
171 172 
parentScientificNameID,"//parent_id/taxonlabel/_if[@name=""if has explicit parent""]/cond/_exists",
172 173 
parentTaxonConceptID,"//parent_id/taxonlabel/_if[@name=""if has explicit parent""]/cond/_exists",
173 174 
parentTaxonID,"//parent_id/taxonlabel/_if[@name=""if has explicit parent""]/cond/_exists",

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