Revision 7149
Added by Aaron Marcuse-Kubitza about 12 years ago
| inputs/.TNRS/public.unscrubbed_taxondetermination_view/VegBIEN.csv | ||
|---|---|---|
| 78 | 78 |
Name_matched_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/rank, |
| 79 | 79 |
Name_matched_url,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/sourceaccessioncode, |
| 80 | 80 |
Name_matched_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonepithet/_if[@name=""if taxonomic name is epithet""]/cond/_alt:[2=true]/1/_taxonomic_name_is_epithet/rank", |
| 81 |
Family_score,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_max/1, |
|
| 82 |
Genus_score,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_max/2, |
|
| 83 |
Specific_epithet_score,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_max/3, |
|
| 84 |
Overall_score,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_max/4,Assuming is a fraction based on the range of values |
|
| 81 |
:0,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_if[@name=""if has taxondetermination""]/cond/_exists",Enables the taxonoccurrence CHECK constraint to pass |
|
| 82 |
Family_score,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_if[@name=""if has taxondetermination""]/else/_max/1", |
|
| 83 |
Genus_score,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_if[@name=""if has taxondetermination""]/else/_max/2", |
|
| 84 |
Specific_epithet_score,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_if[@name=""if has taxondetermination""]/else/_max/3", |
|
| 85 |
Overall_score,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_if[@name=""if has taxondetermination""]/else/_max/4",Assuming is a fraction based on the range of values |
|
| 85 | 86 |
Unmatched_terms,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonepithet, |
| 86 | 87 |
Name_submitted,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonomicname, |
| 87 | 88 |
Author_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonverbatim/author,Contains author in original string |
| ... | ... | |
| 111 | 112 |
Specific_epithet_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet, |
| 112 | 113 |
Name_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonname, |
| 113 | 114 |
Name_matched_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/verbatimrank, |
| 115 |
:0,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/_if[@name=""if has taxondetermination""]/cond/_exists",Enables the taxonoccurrence CHECK constraint to pass |
|
| 116 |
Family_score,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/_if[@name=""if has taxondetermination""]/then/taxonfit/_max/1", |
|
| 117 |
Genus_score,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/_if[@name=""if has taxondetermination""]/then/taxonfit/_max/2", |
|
| 118 |
Specific_epithet_score,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/_if[@name=""if has taxondetermination""]/then/taxonfit/_max/3", |
|
| 119 |
Overall_score,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/_if[@name=""if has taxondetermination""]/then/taxonfit/_max/4",Assuming is a fraction based on the range of values |
|
| 114 | 120 |
:_,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_dateRangeStart/value/_now, |
| 115 | 121 |
:computer,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationtype, |
| 116 | 122 |
taxonoccurrence_id,/location/locationevent/taxonoccurrence/taxonoccurrence_id, |
| inputs/.TNRS/public.unscrubbed_taxondetermination_view/test.xml.ref | ||
|---|---|---|
| 130 | 130 |
<rank>$Name_matched_rank</rank> |
| 131 | 131 |
<sourceaccessioncode>$Name_matched_url</sourceaccessioncode> |
| 132 | 132 |
<taxonlabel fkey="matched_label_id"> |
| 133 |
<matched_label_fit_fraction> |
|
| 134 |
<_max> |
|
| 135 |
<1>$Family_score</1> |
|
| 136 |
<2>$Genus_score</2> |
|
| 137 |
<3>$Specific_epithet_score</3> |
|
| 138 |
<4>$Overall_score</4> |
|
| 139 |
</_max> |
|
| 140 |
</matched_label_fit_fraction> |
|
| 141 | 133 |
<taxonepithet>$Unmatched_terms</taxonepithet> |
| 142 | 134 |
<taxonomicname>$Name_submitted</taxonomicname> |
| 143 | 135 |
<taxonverbatim> |
| ... | ... | |
| 193 | 185 |
<verbatimrank>$Name_matched_rank</verbatimrank> |
| 194 | 186 |
</taxonverbatim> |
| 195 | 187 |
</taxonverbatim_id> |
| 188 |
<taxonfit> |
|
| 189 |
<_max> |
|
| 190 |
<1>$Family_score</1> |
|
| 191 |
<2>$Genus_score</2> |
|
| 192 |
<3>$Specific_epithet_score</3> |
|
| 193 |
<4>$Overall_score</4> |
|
| 194 |
</_max> |
|
| 195 |
</taxonfit> |
|
| 196 | 196 |
<determinationdate><_dateRangeStart><value><_now>_</_now></value></_dateRangeStart></determinationdate> |
| 197 | 197 |
<determinationtype>computer</determinationtype> |
| 198 | 198 |
</taxondetermination> |
| inputs/.TNRS/tnrs_other/VegBIEN.csv | ||
|---|---|---|
| 32 | 32 |
Name_matched_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/rank, |
| 33 | 33 |
Name_matched_url,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/sourceaccessioncode, |
| 34 | 34 |
Name_matched_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonepithet/_if[@name=""if taxonomic name is epithet""]/cond/_alt:[2=true]/1/_taxonomic_name_is_epithet/rank", |
| 35 |
Family_score,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_max/1,
|
|
| 36 |
Genus_score,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_max/2,
|
|
| 37 |
Specific_epithet_score,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_max/3,
|
|
| 38 |
Overall_score,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_max/4,Assuming is a fraction based on the range of values
|
|
| 35 |
Family_score,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_if[@name=""if has taxondetermination""]/else/_max/1",
|
|
| 36 |
Genus_score,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_if[@name=""if has taxondetermination""]/else/_max/2",
|
|
| 37 |
Specific_epithet_score,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_if[@name=""if has taxondetermination""]/else/_max/3",
|
|
| 38 |
Overall_score,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_if[@name=""if has taxondetermination""]/else/_max/4",Assuming is a fraction based on the range of values
|
|
| 39 | 39 |
Unmatched_terms,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonepithet, |
| 40 | 40 |
Name_submitted,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonomicname, |
| 41 | 41 |
Author_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonverbatim/author,Contains author in original string |
| ... | ... | |
| 65 | 65 |
Specific_epithet_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet, |
| 66 | 66 |
Name_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonname, |
| 67 | 67 |
Name_matched_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/verbatimrank, |
| 68 |
Family_score,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/_if[@name=""if has taxondetermination""]/then/taxonfit/_max/1", |
|
| 69 |
Genus_score,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/_if[@name=""if has taxondetermination""]/then/taxonfit/_max/2", |
|
| 70 |
Specific_epithet_score,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/_if[@name=""if has taxondetermination""]/then/taxonfit/_max/3", |
|
| 71 |
Overall_score,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/_if[@name=""if has taxondetermination""]/then/taxonfit/_max/4",Assuming is a fraction based on the range of values |
|
| 68 | 72 |
Accepted_name_lsid,,** No join mapping for *Accepted_name_lsid ** |
| 69 | 73 |
Accepted_name_species,,** No join mapping for *Accepted_name_species ** Also contains genus. Omitted because Accepted_name contains more info. |
| 70 | 74 |
Accepted_name_url,,** No join mapping for *Accepted_name_url ** |
| inputs/.TNRS/tnrs_accepted/VegBIEN.csv | ||
|---|---|---|
| 1 | 1 |
TNRS,VegBIEN:/_setDefault:[source_id/source/shortname/_env:[name=source]]/path/_simplifyPath:[next=parent_id]/path,Comments |
| 2 | 2 |
Name_matched,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/3", |
| 3 |
:true,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/cond/_exists",This table contains only accepted names (names that scrub to themselves) |
|
| 3 | 4 |
Name_submitted,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/cond/_exists", |
| 4 | 5 |
Name_matched_accepted_family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family",Contains family based on matched name |
| 5 | 6 |
Name_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/1", |
| ... | ... | |
| 35 | 36 |
Name_matched_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/rank, |
| 36 | 37 |
Name_matched_url,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/sourceaccessioncode, |
| 37 | 38 |
Name_matched_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonepithet/_if[@name=""if taxonomic name is epithet""]/cond/_alt:[2=true]/1/_taxonomic_name_is_epithet/rank", |
| 38 |
Family_score,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_max/1,
|
|
| 39 |
Genus_score,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_max/2,
|
|
| 40 |
Specific_epithet_score,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_max/3,
|
|
| 41 |
Overall_score,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_max/4,Assuming is a fraction based on the range of values
|
|
| 39 |
Family_score,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_if[@name=""if has taxondetermination""]/else/_max/1",
|
|
| 40 |
Genus_score,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_if[@name=""if has taxondetermination""]/else/_max/2",
|
|
| 41 |
Specific_epithet_score,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_if[@name=""if has taxondetermination""]/else/_max/3",
|
|
| 42 |
Overall_score,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_if[@name=""if has taxondetermination""]/else/_max/4",Assuming is a fraction based on the range of values
|
|
| 42 | 43 |
Unmatched_terms,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonepithet, |
| 43 | 44 |
Name_submitted,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonomicname, |
| 44 | 45 |
Author_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonverbatim/author,Contains author in original string |
| ... | ... | |
| 68 | 69 |
Specific_epithet_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet, |
| 69 | 70 |
Name_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonname, |
| 70 | 71 |
Name_matched_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/verbatimrank, |
| 72 |
Family_score,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/_if[@name=""if has taxondetermination""]/then/taxonfit/_max/1", |
|
| 73 |
Genus_score,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/_if[@name=""if has taxondetermination""]/then/taxonfit/_max/2", |
|
| 74 |
Specific_epithet_score,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/_if[@name=""if has taxondetermination""]/then/taxonfit/_max/3", |
|
| 75 |
Overall_score,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/_if[@name=""if has taxondetermination""]/then/taxonfit/_max/4",Assuming is a fraction based on the range of values |
|
| 71 | 76 |
Accepted_name_lsid,,** No join mapping for *Accepted_name_lsid ** |
| 72 | 77 |
Accepted_name_species,,** No join mapping for *Accepted_name_species ** Also contains genus. Omitted because Accepted_name contains more info. |
| 73 | 78 |
Accepted_name_url,,** No join mapping for *Accepted_name_url ** |
| mappings/VegCore-VegBIEN.csv | ||
|---|---|---|
| 250 | 250 |
accordingTo,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonconcept/concept_reference_id/source/shortname, |
| 251 | 251 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonepithet/_if[@name=""if taxonomic name is epithet""]/cond/_alt:[2=true]/1/_taxonomic_name_is_epithet/rank", |
| 252 | 252 |
taxonNameOrEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonepithet/_if[@name=""if taxonomic name is epithet""]/then", |
| 253 |
matchedFamilyFit_fraction,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_max/1, |
|
| 254 |
matchedGenusFit_fraction,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_max/2, |
|
| 255 |
matchedSpeciesFit_fraction,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_max/3, |
|
| 256 |
matchedTaxonFit_fraction,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_max/4, |
|
| 253 |
taxonOccurrenceID,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_if[@name=""if has taxondetermination""]/cond/_exists", |
|
| 254 |
matchedFamilyFit_fraction,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_if[@name=""if has taxondetermination""]/else/_max/1", |
|
| 255 |
matchedGenusFit_fraction,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_if[@name=""if has taxondetermination""]/else/_max/2", |
|
| 256 |
matchedSpeciesFit_fraction,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_if[@name=""if has taxondetermination""]/else/_max/3", |
|
| 257 |
matchedTaxonFit_fraction,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_if[@name=""if has taxondetermination""]/else/_max/4", |
|
| 257 | 258 |
morphospecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonepithet, |
| 258 | 259 |
verbatimScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonomicname, |
| 259 | 260 |
verbatimScientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonverbatim/author, |
| ... | ... | |
| 290 | 291 |
taxonName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonname, |
| 291 | 292 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonomicname, |
| 292 | 293 |
taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/verbatimrank, |
| 294 |
taxonOccurrenceID,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/_if[@name=""if has taxondetermination""]/cond/_exists", |
|
| 295 |
matchedFamilyFit_fraction,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/_if[@name=""if has taxondetermination""]/then/taxonfit/_max/1", |
|
| 296 |
matchedGenusFit_fraction,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/_if[@name=""if has taxondetermination""]/then/taxonfit/_max/2", |
|
| 297 |
matchedSpeciesFit_fraction,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/_if[@name=""if has taxondetermination""]/then/taxonfit/_max/3", |
|
| 298 |
matchedTaxonFit_fraction,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/_if[@name=""if has taxondetermination""]/then/taxonfit/_max/4", |
|
| 293 | 299 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_dateRangeStart/value, |
| 294 | 300 |
dayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value", |
| 295 | 301 |
monthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value", |
| mappings/for_review/VegCore-VegBIEN.csv | ||
|---|---|---|
| 250 | 250 |
accordingTo,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/*_id/taxonlabel/taxonconcept/concept_reference_id/source/shortname, |
| 251 | 251 |
taxonRank,"//taxonlabel/taxonepithet/_if[@name=""if taxonomic name is epithet""]/cond", |
| 252 | 252 |
taxonNameOrEpithet,"//taxonlabel/taxonepithet/_if[@name=""if taxonomic name is epithet""]/then", |
| 253 |
matchedFamilyFit_fraction,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel/matched_label_fit_fraction, |
|
| 254 |
matchedGenusFit_fraction,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel/matched_label_fit_fraction, |
|
| 255 |
matchedSpeciesFit_fraction,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel/matched_label_fit_fraction, |
|
| 256 |
matchedTaxonFit_fraction,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel/matched_label_fit_fraction, |
|
| 253 |
taxonOccurrenceID,"//taxonlabel/matched_label_fit_fraction/_if[@name=""if has taxondetermination""]/cond/_exists", |
|
| 254 |
matchedFamilyFit_fraction,"//taxonlabel/matched_label_fit_fraction/_if[@name=""if has taxondetermination""]/else", |
|
| 255 |
matchedGenusFit_fraction,"//taxonlabel/matched_label_fit_fraction/_if[@name=""if has taxondetermination""]/else", |
|
| 256 |
matchedSpeciesFit_fraction,"//taxonlabel/matched_label_fit_fraction/_if[@name=""if has taxondetermination""]/else", |
|
| 257 |
matchedTaxonFit_fraction,"//taxonlabel/matched_label_fit_fraction/_if[@name=""if has taxondetermination""]/else", |
|
| 257 | 258 |
morphospecies,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel/taxonepithet, |
| 258 | 259 |
verbatimScientificName,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel/taxonomicname, |
| 259 | 260 |
verbatimScientificNameAuthorship,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel/taxonverbatim/author, |
| ... | ... | |
| 290 | 291 |
taxonName,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/taxonname, |
| 291 | 292 |
scientificName,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/taxonomicname, |
| 292 | 293 |
taxonRank,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/verbatimrank, |
| 294 |
taxonOccurrenceID,"//taxonoccurrence/taxondetermination/_if[@name=""if has taxondetermination""]/cond/_exists", |
|
| 295 |
matchedFamilyFit_fraction,"//taxonoccurrence/taxondetermination/_if[@name=""if has taxondetermination""]/then/taxonfit", |
|
| 296 |
matchedGenusFit_fraction,"//taxonoccurrence/taxondetermination/_if[@name=""if has taxondetermination""]/then/taxonfit", |
|
| 297 |
matchedSpeciesFit_fraction,"//taxonoccurrence/taxondetermination/_if[@name=""if has taxondetermination""]/then/taxonfit", |
|
| 298 |
matchedTaxonFit_fraction,"//taxonoccurrence/taxondetermination/_if[@name=""if has taxondetermination""]/then/taxonfit", |
|
| 293 | 299 |
dateIdentified,//taxonoccurrence/taxondetermination[]/determinationdate, |
| 294 | 300 |
dayIdentified,//taxonoccurrence/taxondetermination[]/determinationdate, |
| 295 | 301 |
monthIdentified,//taxonoccurrence/taxondetermination[]/determinationdate, |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: Remapped matched*Fit_fraction to taxondetermination.taxonfit when a taxondetermination, not just a taxonlabel, is provided