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Name Size Revision Age Author Comment
  _archive 1598 over 12 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 about 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 7037 over 11 years Aaron Marcuse-Kubitza backups/Makefile: Synchronization: %/download: ...
  bin 7148 over 11 years Aaron Marcuse-Kubitza bin/map: map_table(): Resolving prefixes: Fixed...
  config 6321 over 11 years Aaron Marcuse-Kubitza Added config/bien_read_password
  inputs 7156 over 11 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: Don't map morphos...
  lib 7141 over 11 years Aaron Marcuse-Kubitza xml_func.py: Simplifying functions: Merging: Ad...
  mappings 7156 over 11 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: Don't map morphos...
  schemas 7152 over 11 years Aaron Marcuse-Kubitza schemas/vegbien.sql: tnrs_input_name: Use TNRS....
  to_do 4524 almost 12 years Aaron Marcuse-Kubitza to_do/timeline.doc: Updated to reflect addition...
  validation 5971 over 11 years Aaron Marcuse-Kubitza Updated validation/BIEN2_Analytical_DB_overview...
Makefile 11.3 KB 7082 over 11 years Aaron Marcuse-Kubitza root Makefile: Removed $(subMake), which is now...
README.TXT 16.5 KB 7122 over 11 years Aaron Marcuse-Kubitza bin/map: Made $redo flag default to off, becaus...
map 1001 Bytes 6949 over 11 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 30.4 KB 4887 almost 12 years Aaron Marcuse-Kubitza Regenerated root unmapped_terms.csv, new_terms.csv
unmapped_terms.csv 5.8 KB 4887 almost 12 years Aaron Marcuse-Kubitza Regenerated root unmapped_terms.csv, new_terms.csv

Latest revisions

# Date Author Comment
7156 01/10/2013 11:52 PM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: Don't map morphospecies to the parsed taxonlabel's taxonepithet, because this causes an extra, parsed taxonlabel to be created for TNRS.public.unscrubbed_taxondetermination_view. It is not needed by the other TNRS tables.

7155 01/10/2013 11:45 PM Aaron Marcuse-Kubitza

inputs/.TNRS/public.unscrubbed_taxondetermination_view/map.csv: Omit Infraspecific_rank to help avoid creating a separate, parsed taxonlabel. Don't map to taxonRank because Name_matched_rank is populated more often.

7154 01/10/2013 11:34 PM Aaron Marcuse-Kubitza

inputs/.TNRS/public.unscrubbed_taxondetermination_view/scrub.make: Reduced $maxPause to 4 hr, because new taxondeterminations are being added throughout the import, so it is unlikely that more than more than 4 hr would pass between successive imports of taxondeterminations (causing scrub.make to stop prematurely)

7153 01/10/2013 11:23 PM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: Removed no longer used tnrs+accepted. Use tnrs_canon or a self-join of tnrs instead

7152 01/10/2013 11:22 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: tnrs_input_name: Use TNRS.tnrs directly instead of the now-deprecated tnrs+accepted

7151 01/10/2013 11:12 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: Use new TNRS.tnrs_canon instead of tnrs+accepted to avoid creating additional taxonlabels for the parsed, matched, and accepted names and instead just use the most-canonicalized name of the names output by TNRS (the accepted name if available, or the matched name otherwise)

7150 01/10/2013 10:50 PM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: "if has verbatim name" _if statements that filter something out for TNRS mappings: Also assume true if taxonIsCanonical is specified, because some TNRS tables (eventually such as public.unscrubbed_taxondetermination_view) do not specify a separate "verbatim" taxondetermination but do provide taxonIsCanonical as a flag to turn various mappings on and off

7149 01/10/2013 09:06 PM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: Remapped matched*Fit_fraction to taxondetermination.taxonfit when a taxondetermination, not just a taxonlabel, is provided

7148 01/10/2013 09:03 PM Aaron Marcuse-Kubitza

bin/map: map_table(): Resolving prefixes: Fixed bug where need to use list instead of tuple for metadata value mappings

7147 01/10/2013 08:16 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: taxondetermination: Added CHECK constraint to allow only taxondeterminations with a minimum fit fraction of 80%, analogous to taxonlabel's taxonlabel_1_matched_label_min_fit() trigger

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