Project

General

Profile

Statistics
| Revision:
Name Size Revision Age Author Comment
  _archive 1598 almost 13 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 7037 almost 12 years Aaron Marcuse-Kubitza backups/Makefile: Synchronization: %/download: ...
  bin 7148 almost 12 years Aaron Marcuse-Kubitza bin/map: map_table(): Resolving prefixes: Fixed...
  config 6321 about 12 years Aaron Marcuse-Kubitza Added config/bien_read_password
  inputs 7162 almost 12 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: Removed TNRS inpu...
  lib 7141 almost 12 years Aaron Marcuse-Kubitza xml_func.py: Simplifying functions: Merging: Ad...
  mappings 7162 almost 12 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: Removed TNRS inpu...
  schemas 7161 almost 12 years Aaron Marcuse-Kubitza schemas/vegbien.sql: analytical_stem_view: Use ...
  to_do 4524 over 12 years Aaron Marcuse-Kubitza to_do/timeline.doc: Updated to reflect addition...
  validation 5971 about 12 years Aaron Marcuse-Kubitza Updated validation/BIEN2_Analytical_DB_overview...
Makefile 11.3 KB 7082 almost 12 years Aaron Marcuse-Kubitza root Makefile: Removed $(subMake), which is now...
README.TXT 16.5 KB 7122 almost 12 years Aaron Marcuse-Kubitza bin/map: Made $redo flag default to off, becaus...
map 1001 Bytes 6949 about 12 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 30.4 KB 4887 over 12 years Aaron Marcuse-Kubitza Regenerated root unmapped_terms.csv, new_terms.csv
unmapped_terms.csv 5.8 KB 4887 over 12 years Aaron Marcuse-Kubitza Regenerated root unmapped_terms.csv, new_terms.csv

Latest revisions

# Date Author Comment
7162 01/11/2013 02:03 AM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: Removed TNRS input taxonlabels meant to cross-link to taxonlabels added by the TNRS import, because TNRS taxondeterminations are now created instead

7161 01/11/2013 01:42 AM Aaron Marcuse-Kubitza

schemas/vegbien.sql: analytical_stem_view: Use just the main taxonlabel created by scrub.make instead of all the additional taxonlabels created by the TNRS import

7160 01/11/2013 01:11 AM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: main taxonverbatim.morphospecies "if has verbatim name" condition: Fixed bug where need to remove the taxonIsCanonical flag, because the TNRS.public.unscrubbed_taxondetermination_view table (which uses this flag) should include this field (although not other places where the morphospecies is stored by other TNRS tables)

7159 01/11/2013 12:49 AM Aaron Marcuse-Kubitza

schemas/vegbien.sql: taxondetermination: taxondetermination_set_iscurrent() trigger: Also run on delete, to mark another taxondetermination as the current one when a current taxondetermination is deleted

7158 01/11/2013 12:18 AM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: tnrs_canon: Annotations: Always use value from the matched name, because the accepted name does not have this

7157 01/11/2013 12:05 AM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: primary taxonlabel's parent taxonlabel: Fixed bug where a taxonverbatim was incorrectly being created solely to store the taxonRank, even though it was already stored in the taxonlabel's rank field

7156 01/10/2013 11:52 PM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: Don't map morphospecies to the parsed taxonlabel's taxonepithet, because this causes an extra, parsed taxonlabel to be created for TNRS.public.unscrubbed_taxondetermination_view. It is not needed by the other TNRS tables.

7155 01/10/2013 11:45 PM Aaron Marcuse-Kubitza

inputs/.TNRS/public.unscrubbed_taxondetermination_view/map.csv: Omit Infraspecific_rank to help avoid creating a separate, parsed taxonlabel. Don't map to taxonRank because Name_matched_rank is populated more often.

7154 01/10/2013 11:34 PM Aaron Marcuse-Kubitza

inputs/.TNRS/public.unscrubbed_taxondetermination_view/scrub.make: Reduced $maxPause to 4 hr, because new taxondeterminations are being added throughout the import, so it is unlikely that more than more than 4 hr would pass between successive imports of taxondeterminations (causing scrub.make to stop prematurely)

7153 01/10/2013 11:23 PM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: Removed no longer used tnrs+accepted. Use tnrs_canon or a self-join of tnrs instead

View all revisions | View revisions

Also available in: Atom