| 1 |
748
|
aaronmk
|
coreMaps := DwC-VegBIEN.specimens.csv VegX-VegBIEN.organisms.csv
|
| 2 |
744
|
aaronmk
|
chRootMaps := VegX-VegBIEN.plots.csv VegX-VegBIEN.stems.csv
|
| 3 |
|
|
joinedMaps := $(filter-out DwC-% VegX-%,$(wildcard *-VegBIEN.*.csv))
|
| 4 |
|
|
all := $(wildcard for_review/*) $(joinedMaps) $(chRootMaps)
|
| 5 |
|
|
|
| 6 |
|
|
all: _always $(coreMaps) $(chRootMaps)
|
| 7 |
|
|
@#./join DwC VegBIEN
|
| 8 |
198
|
aaronmk
|
./join VegX VegBIEN
|
| 9 |
199
|
aaronmk
|
./review
|
| 10 |
150
|
aaronmk
|
|
| 11 |
223
|
aaronmk
|
.SUFFIXES:
|
| 12 |
|
|
|
| 13 |
383
|
aaronmk
|
_always:
|
| 14 |
|
|
.PHONY: _always
|
| 15 |
188
|
aaronmk
|
|
| 16 |
383
|
aaronmk
|
clean: _always
|
| 17 |
196
|
aaronmk
|
$(RM) $(all)
|
| 18 |
188
|
aaronmk
|
|
| 19 |
423
|
aaronmk
|
remake: _always clean all ;
|
| 20 |
|
|
|
| 21 |
240
|
aaronmk
|
#####
|
| 22 |
198
|
aaronmk
|
|
| 23 |
744
|
aaronmk
|
bin := ../bin
|
| 24 |
240
|
aaronmk
|
|
| 25 |
779
|
aaronmk
|
$(coreMaps): %: .%.last_cleanup
|
| 26 |
612
|
aaronmk
|
$(bin)/in_place $@ $(bin)/simplify_xpath
|
| 27 |
438
|
aaronmk
|
$(bin)/in_place $@ $(bin)/sort 1 0
|
| 28 |
779
|
aaronmk
|
touch -r $@ $<
|
| 29 |
|
|
.PRECIOUS: .%.last_cleanup
|
| 30 |
|
|
# Ignore last_cleanup file if it doesn't exist
|
| 31 |
|
|
.%.last_cleanup:
|
| 32 |
350
|
aaronmk
|
|
| 33 |
240
|
aaronmk
|
#####
|
| 34 |
212
|
aaronmk
|
|
| 35 |
744
|
aaronmk
|
chRoot = $(bin)/ch_root <$< >$@
|
| 36 |
197
|
aaronmk
|
|
| 37 |
438
|
aaronmk
|
VegX-VegBIEN.plots.csv: VegX-VegBIEN.organisms.csv
|
| 38 |
188
|
aaronmk
|
env \
|
| 39 |
439
|
aaronmk
|
left_in_root='/*s/individualOrganismObservation/*ID->/*s/plotObservation' \
|
| 40 |
|
|
left_out_root='/*s/plotObservation' \
|
| 41 |
525
|
aaronmk
|
right_in_root='/taxonoccurrence/*_id/locationevent' \
|
| 42 |
|
|
right_out_root='/locationevent' \
|
| 43 |
439
|
aaronmk
|
$(chRoot)
|
| 44 |
|
|
|
| 45 |
|
|
VegX-VegBIEN.stems.csv: VegX-VegBIEN.organisms.csv
|
| 46 |
|
|
env \
|
| 47 |
441
|
aaronmk
|
left_in_root='/*s/individualOrganismObservation->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]' \
|
| 48 |
504
|
aaronmk
|
left_out_root='/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]' \
|
| 49 |
681
|
aaronmk
|
right_in_root='/taxonoccurrence/aggregateoccurrence/*_id/plantobservation/stemobservation' \
|
| 50 |
673
|
aaronmk
|
right_out_root='/stemobservation' \
|
| 51 |
439
|
aaronmk
|
$(chRoot)
|
