| 1 |
785
|
aaronmk
|
##### Vars/functions
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| 2 |
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|
| 3 |
748
|
aaronmk
|
coreMaps := DwC-VegBIEN.specimens.csv VegX-VegBIEN.organisms.csv
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| 4 |
744
|
aaronmk
|
chRootMaps := VegX-VegBIEN.plots.csv VegX-VegBIEN.stems.csv
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| 5 |
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joinedMaps := $(filter-out DwC-% VegX-%,$(wildcard *-VegBIEN.*.csv))
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| 6 |
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all := $(wildcard for_review/*) $(joinedMaps) $(chRootMaps)
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| 7 |
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| 8 |
785
|
aaronmk
|
##### General targets
|
| 9 |
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|
| 10 |
744
|
aaronmk
|
all: _always $(coreMaps) $(chRootMaps)
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| 11 |
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@#./join DwC VegBIEN
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| 12 |
198
|
aaronmk
|
./join VegX VegBIEN
|
| 13 |
199
|
aaronmk
|
./review
|
| 14 |
150
|
aaronmk
|
|
| 15 |
223
|
aaronmk
|
.SUFFIXES:
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| 16 |
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|
| 17 |
383
|
aaronmk
|
_always:
|
| 18 |
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.PHONY: _always
|
| 19 |
188
|
aaronmk
|
|
| 20 |
383
|
aaronmk
|
clean: _always
|
| 21 |
196
|
aaronmk
|
$(RM) $(all)
|
| 22 |
188
|
aaronmk
|
|
| 23 |
423
|
aaronmk
|
remake: _always clean all ;
|
| 24 |
|
|
|
| 25 |
785
|
aaronmk
|
##### Core maps cleanup
|
| 26 |
198
|
aaronmk
|
|
| 27 |
744
|
aaronmk
|
bin := ../bin
|
| 28 |
240
|
aaronmk
|
|
| 29 |
779
|
aaronmk
|
$(coreMaps): %: .%.last_cleanup
|
| 30 |
612
|
aaronmk
|
$(bin)/in_place $@ $(bin)/simplify_xpath
|
| 31 |
438
|
aaronmk
|
$(bin)/in_place $@ $(bin)/sort 1 0
|
| 32 |
779
|
aaronmk
|
touch -r $@ $<
|
| 33 |
|
|
.PRECIOUS: .%.last_cleanup
|
| 34 |
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# Ignore last_cleanup file if it doesn't exist
|
| 35 |
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|
.%.last_cleanup:
|
| 36 |
350
|
aaronmk
|
|
| 37 |
785
|
aaronmk
|
##### Maps generated with ch_root
|
| 38 |
212
|
aaronmk
|
|
| 39 |
744
|
aaronmk
|
chRoot = $(bin)/ch_root <$< >$@
|
| 40 |
197
|
aaronmk
|
|
| 41 |
438
|
aaronmk
|
VegX-VegBIEN.plots.csv: VegX-VegBIEN.organisms.csv
|
| 42 |
188
|
aaronmk
|
env \
|
| 43 |
439
|
aaronmk
|
left_in_root='/*s/individualOrganismObservation/*ID->/*s/plotObservation' \
|
| 44 |
|
|
left_out_root='/*s/plotObservation' \
|
| 45 |
525
|
aaronmk
|
right_in_root='/taxonoccurrence/*_id/locationevent' \
|
| 46 |
|
|
right_out_root='/locationevent' \
|
| 47 |
439
|
aaronmk
|
$(chRoot)
|
| 48 |
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|
|
| 49 |
|
|
VegX-VegBIEN.stems.csv: VegX-VegBIEN.organisms.csv
|
| 50 |
|
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env \
|
| 51 |
441
|
aaronmk
|
left_in_root='/*s/individualOrganismObservation->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]' \
|
| 52 |
504
|
aaronmk
|
left_out_root='/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]' \
|
| 53 |
681
|
aaronmk
|
right_in_root='/taxonoccurrence/aggregateoccurrence/*_id/plantobservation/stemobservation' \
|
| 54 |
673
|
aaronmk
|
right_out_root='/stemobservation' \
|
| 55 |
439
|
aaronmk
|
$(chRoot)
|
